LOC110527334 (LOC106575514)


Basic Information

Item Value
gene id LOC110527334
gene name LOC106575514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13371737 ~ 13421278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984406.1
ATGTTCCTGAAAGACTTTGGCTGGGTCACTGACAGCGAtagaaacgattcggttgacaggttttatgtgtggattaatcctcggatttcagGTGTATCCCATGCCAGGGTGGTGTCTGTGTCCCCTGGCCCTCTGCTCCGTGTGGAGGGCCAACCTGTCTCACTGCGTTGTGATGTCACTGACTACGAGGGGCCCAGGGAGCAGGATTTTGATTGGACCATGCAGCAGGGGGAGGCGGGGTCTATCAATGTAATCTCCACCTTCGAACCAAAGTACTCTGACGTGTCGCTAAGCGACCGGGTGGCCAGTGGTGACCTGAGCGTGGTGCGGCTGGGGGACAGCGTGGTGGAGCTGAGGATACGGGAAGTGAGGTCTTCAGACAGCGCCACGTACCTCTGCAGTACACCCAGTACGGACTCTGTCTTCAGCGGGAACTACGACGCAGGGGTGGCGCTCAAAGTCATTGCTAACACCCTGAAGGTGGCCCCGGAGGCCCCAGAGCCCGTGGTCCCCGAGGGTGGCGACATCACCCTCTCCTGCAACGTCACCCGCCACTTCACTGATCCCACCTACCTGTCCGTCACCTGGTCGCTACGGAGACCAGGTATCCCATTGGTGGACATCCTGACCGTTGGCCCAGATGGGGATGTGGTCATAGGAAGTGCTTCCGCCCAGCGCTACGCTGACGGAGGGCTCCGATTGGCTATTCGCAGAGATGGGGCGTTTGGATTGGTTGTTGCCGGGGTGACGCAGGCTGATGCAGGGATGTACGTGTGCACGGGGAGGGAATGGATTCACGAGGAAGGGGGTCAGTGGAAGAACATCGTGGGGAAGACTGTGGAGATGGGAGCTGTGGCAGTCACACCTACAGCTCGTTCCCTGTCTGTTGTGGCCAAGTCCAACACCACGCTCAACATGGACGACACCCTGACCCTCACCTGCCTTATCTCCGCGGGTAACTTGGCCTCCCTGGCCCTGGAGGTCACCTGGCTTGTGGACGGACGCACAGCGGTCAGCCTGGGCCGTGACGGGGTGGTCTCAAACGGGTCCCCCTCGGTGGGGCTGGAGCGGACGGGGCCAGGGGAGTTTAGGCTGGTGGTGAGGGGGGTAAGGGGGTCTGACAAGGGGATATACTCCTGTAGGGTCCGGGCCTGGGTCGGAGGAGGAGGACGATGGTACCAGGCTGCAGAGAAGACCTCCAACCCAGTACAAGTTCTAGTCACACAGATCAAGCCAAATTTTGCAGTGACCCTTACCCCCTCGTCGACCCCGCAGGTCACAGGTGACCCCACAGAGCTGGCGTGTCATGTGACCAACATCACTCACTTCCTTGCAGGGGGCCGACTGGGCGTGGCCTGGGAGTACACACCACTTCCTGGTCCACCCGGCGACCGCCTGACAACCACACAGACCACCCTCCCTATTGGTTCCCTGGATGCCCACGGCAACCTGAAGTCTGGGACGCTGTACCATGATAGGTTGGAGTCTGGTGCCATCGTTCTGACCCGAGTAGAACCGGATACATTCAAGCTCCGCTTCCTACGTAcacagGACGTGGACATGGGGGCGTATGCGTGCAGTGTGACAGCGTGGACTCCCTCTAGGCAGGGTGGAATGGAGGAGGCAGCAGAGTTCCTCACCCCCCCTCTGACCGTCCGATGGGAACCCAAACGTCCGTCTCTAACCGCCGTGGCACAGCGTGTGCGTGAGGCGGTGGCGGGCGGAGCCACTTTTGAGATGAGCTGTACCATATCCCATGTGCACTTGCAGGACCCGGGCTACTCTGTGCTGGTGCAGACTCAGGACAGTGTGGACTCTGCCACTAGaactgtcctctctctcagtcctgACTCTGTACTACAACATGGAGGGGCTACCGACCCTAaccgcagGGACAGCCTGGTTCTGACTAAGACGGGTCCGGCTGAGTTCCGCTTCCGTCTGGCCGGAGTGCAGCAGGGTGACAGGGGCTTCTACTGGTGTGATATCACCGCCTGGACCAAACAACCAGGCCAGGCCTGGACCAAAGCTGTCAGCGCCAAGTCCAACAAGGTCCAGATCAACTTCCAGGAAACTGGCCCCTCGTTCGCTGTGGCCATCCGCTCTGACACCACCACTTTGTATCCCTGGGAGACCGCCAAGATGGTGTGTGCCCTCAGCATCTCTGGAGCATCCCCCAAGTCAGatGACCTGTCCTACGAGGTACGTTGGTACCTCACGCGGCTGAGAGGGGGGAACAAAGGCACCCTACTGGCCAGCGTGGACCGCTTCGGTCTGGTCAAGAAGGAGGCACGCAACGCCAGCAGTGACGTGTCCCTGgagcgcacagacacacacacctacgccCTGAACATCCACGCCACCCAGGACAGCGACAGCGGGGAGTACCACTGCCAGGCCACGCCCTGGTACCTGTCTGCCTCCACAGGGGCCTGGACACACGGGGCAGAACTCACCTCTACCAGGGTGTTCCTCACTGTACGATTCCCCAtgTGGGACTCTCTGAAGCTGCCTCTGCTGTACGGTTCTGTAGCCTCTGTGTCCGTGgggctcttctctctcctcctgggTTTCATCTGTGCCCACTGCTGCTGCCgcaacaccacacacacccccCGCTCACGCAACAAACTCATGGACCTGGAGATGGATTGACTAGCACAGGCCCGCTGGAGCGACCACCGCTTCTCCAGCTGATGAACTACGAGCACGCGCACGTTACCGCGCCGGCACATTACCACGGCAACGGCAGACAATTGACCAATCACAGCCCTTCGGTTGCGCTCCGTGGAGCTTTTAAGCGCACcaacgggagaggaggaggagagacaataGGACATTTACTGTGGCGCTgtagaggggaaaaaaaacactgAACTGAATCAACTGCTAAAGAAGAGTGCAGGATATCTAGTCTGCCTATGTGAACGTATTGATGTTAGGTATTGCACAAAACAGCCCTGGAGTATTCCTACCTTAGTGGACTTTGTCTACGTTTGTCCTCATCACTAGTTTTTGAAATGAGACTGCTTTTaaatggaggtgtgtgtgtgtgtgctatattTGTGTGGTTCGCCACACCTGAGGCTGGGAAAGAGAGCCGCTTTACCCGTTTTGTCCTGCCCTGTTCCTGGTGAGATGTAATTTTACTCTTACTCAACAGCAACTAGCCAGGTTCCCTGGTAAAAGTTGATGACCTCAGAGGCTCTCCTCTAGAGCGAGTGAAAGACACTTAAGGACCCAGAGCTCACCTGCTGTAACCCCCTACACTGACACTGGTGCTACCCCCACTGTGAAGGACATTGATGTTATGTTGGACCTAGGGTTTATATGGGGCAGGTTGAGGAGCAAGCTGGCCAATAAGAGAGTGGATTAGTGGTGGTGACTGAGAGGAGTGGTATGATATGGACTGACACAGTCAGAGGGAGACATCGTTTATATAGGTAGCATACTGGATTAATGCGTGGAACCAGCTGGAACCTGCAGTGctccacacacactcccagcCAATGCCTGGCTCTAGCTGAAGAGTCCCAAAGTGGcttcctcgtctcctctccttcatctgcactgatcaaTAAACACAGGGTGGATCTAAGCAATATAATAGTTGAAGCCTACCTGTTTCATTcacatcagtgcagatgaagcgAAGAAGACGGGACGAGGAAGCCAGAGCATGGAGATACACCCCTGGAATGCAATGGAGAAGGATTAGAGAGAACTGTTAACAAACCCATTCCTGAAAGCAATCTCCATGTCACCTCCCAGTTTAGTAGGGCCCAGTCCCTTAGGGAGTCTTCTTCCCCTGTCTCTGGTACAGTACAATAGCTGTGTGTCCATAGAAATGACTGTTGTGTTTGTATGGGGCTGGGGCTCTCAGGGCTGTTGTGTGTGTTCCTGGGGTTAGTGGTTGGCCCAGCAGTATTCTGCCCATCGACAAAGACCAGCCCTACCCTCTACTAATTACCCCTACCTAGACCCAGAAGGCCCTTTTAGAATGGTCCTGTACCTGATGTCAACTACCACCACTGAAATGCTACCCTGTCTATACACACGCTCCATATACTGCCAACACTCAACATA

Function

NR:

description
prostaglandin F2 receptor negative regulator-like

GO: NA

KEGG:

id description
K06729 PTGFRN, CD315; prostaglandin F2 receptor negative regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984406.1 True 4086 mRNA 0.56 12 13371737 13421278

Neighbor

gene id symbol gene type direction distance location
LOC100136183 LOC100380633 coding upstream 222261 13135560 ~ 13149476 (+)
LOC100136184 LOC100136184 coding upstream 240820 13117153 ~ 13130917 (+)
LOC110527329 LOC106574721 coding upstream 281386 13075980 ~ 13090351 (+)
LOC110527327 LOC106575575 coding upstream 312911 13055457 ~ 13058826 (+)
LOC110527322 LOC106574731 coding upstream 459416 12900599 ~ 12912321 (+)
LOC110527335 LOC106575499 coding downstream 9245 13430523 ~ 13443490 (+)
LOC110527337 tgds coding downstream 30563 13451841 ~ 13460114 (+)
LOC110528759 LOC106575503 coding downstream 98995 13520273 ~ 13523716 (+)
LOC110527094 NA coding downstream 103222 13524500 ~ 13527438 (+)
LOC110527340 LOC106575504 coding downstream 131817 13553095 ~ 13566497 (+)
G576172 LOC106575469 non-coding upstream 13694 13200491 ~ 13358043 (+)
G576171 NA non-coding upstream 35642 13333522 ~ 13336095 (+)
G576188 NA non-coding upstream 143555 13224462 ~ 13228182 (+)
G576173 NA non-coding upstream 159510 13190997 ~ 13212227 (+)
G576109 NA non-coding upstream 318553 13052860 ~ 13053184 (+)
G576292 NA non-coding downstream 22495 13443773 ~ 13447070 (+)
G576238 NA non-coding downstream 39272 13460550 ~ 13461432 (+)
G576315 NA non-coding downstream 61946 13483224 ~ 13484753 (+)
G576707 NA non-coding downstream 95130 13516408 ~ 13516616 (+)
G576708 NA non-coding downstream 95410 13516688 ~ 13517159 (+)
G576161 NA other upstream 164248 13173312 ~ 13207489 (+)
G576160 NA other upstream 198663 13172784 ~ 13173074 (+)
G575758 NA other upstream 829256 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 902986 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1536422 11826502 ~ 11836170 (+)
G576241 LOC106575516 other downstream 65238 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 694058 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 724792 14146070 ~ 14159585 (+)
G577261 NA other downstream 751245 14172523 ~ 14180064 (+)
LOC118965342 NA other downstream 809439 14218353 ~ 14230983 (+)

Expression


Co-expression Network