LOC110527335 (LOC106575499)


Basic Information

Item Value
gene id LOC110527335
gene name LOC106575499
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13430523 ~ 13443490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608544.2
ATGCGAAAACTTGAGGCTAGAGCGTGCATCTACGCCATAGGCAAAGATGGGGGGGGCGTGTTCATAGAAATGGCACTATGCTGTCAAACCAAATTTGGAATGCAACCGGTGAAAAAAATTACACCTAATCTACCTGCCTAGGAAGAAGCGTGATTGATGCCGCGAGTCCGGTGTTGGAGAGATTAGTCAGAGAAGGGCTGCTGGAAATGGAGCATCGATACAGATGAGCTGCTACCTCAAACCTACAGTGTTCCCCATCAACCCTTAGGGTGCCTTGCTGTGGGAATACCTCACCAAGACCTGAACTGGACCAGACTCGCCTGCAGCATCCAAGCATTGTGTCTTAGAATCTCTCATAATCAACTGAAAGACTGGAACTTAAATTGAAAGGGTACTGATCACTAAAGCAACCATATCACCATATCACTAGCAACCATATCACCTAACTCCTCAATAACTAGAAGTATTATCCAAGATGGCTCCTACCACCATGGAGGCGGCGGACATCGTTGTTGTGGTGCTGTACTTCATCCTGGTCCTTGCCATTGGCTTCTTCGCCATGATGAAAGCTAATCGGAGCACTGTGAGCGGTTACTTCCTGGCCGGCCGATCAATGAACTGGGCTATGATTGGTGCCTCTCTGTTCGTCAGCAACATTGGCAGCGAGCATTTCATTGGCCTTGCAGGGTCCGGGGCGGCTAGCGGGTTTGGAGTCGCCGCATGGGAGTTCAATGCCCTcctgctcctccagctcctgGGCTGGGTTTTCATCCCTGTTTACATCCACTCTGGGGTCTACACAATGCCTGAGTACCTGGCCAAGCGCTTCGGCGGCCGACGGCTCAAGGTCTACttcgctgctctctctctgctgctctacatCTTCACCAAGCTCTCTGTGGACCTGTACTCCGGAGCGCTCTTCATCCAGGAGTCACTGGGCTGGAACCTCTATCTGTCCATCATCCTCCTCATCACCGTGACCGCACTGCTGACCGTCACAGGGGGCCTGGTTGCAGTCATCTACACCGACACCCTCCAGGCATTCCTGATGATTGGTGGCGCGCTATGCCTAACCGCCATTAGCCTGGTAAAAGTGGGTGGCCTGGAAGGGGTGCGGACCAAGTACATGGAAGCCAGACCGAACATCACAGCAATATTAGCATCCTCCAACTTCACCTACATCCCCTCCTGCCACGTGGAGCCCAAGCCCGACTCCCTGCGCATCCTAAGGGGCCCGCTGGACAAGGACCTCCCCTGGCCGGGCTTCCTCCTTGGCCAGACCCCGGCCTCCATCTGGTACTGGTGTGCCGACCAGGTCATCGTCCAGCGGGTGCTAGCTGCACGGAGCATCTCCCACGCTAAAGGCTCCACACTGATGGCCGGCTTCCTCAAGATCCTGCCCATGTTCATCATCGTCATTCCCGGGATGATCTCCCGCATCCTGTTTGCAGATGAGCTGGCGTGTATCAGCCCAGAACACTGCATGGAGGTGTGTGGATCCAGGGCCGGGTGCTCTAACATTGCCTACCCCCGCCTGGTGATGACCGTCATGCCGGTGGGTCTGCGTGGCCTGATGATGGCGGTGATGATCGCAGCGCTCATGAGCGACCTGGACTCCATCTTCAACTCCGCCAGCACCATCTTCACCTTGGACATTTACAAAATGGCACGGGAGCGGGCGTCGTCGAGGGAGCTGATGGTGGTGGGACGTGTGTTCGTGGTGTTCATGGTGGTTATCAGCATCGCCTGGGTTCCTGTCATCATCGAGATGCAGGGAGGCCAGATGTTCTACTACATCCAGGAAGTGTCTGACTACCTGACCCCGCCCATCGCTGCCCTATTCCTGCTGGGCGTCCTATGGCGGCGCTGCAACGAGGCTGGTGCGTTCTGGGGTGGCATAGTGGGGTTCGCGTTGGGCGCCACGAGACTGGTGCTTGCGTTCGTCTACAGAGAGCCCCACTGCGACGAGCCGGACGAGCGGCCATCTTTTGTCAAGGACGTCCATTTCATGTACGTGGCAGCCGGGCTGTTCTGGATCTCAGGCCTGGTGGCTGTGGTGGTTAGCCTCTGCACCCCTCCACCGAGCATAGAGCAGGTCCGCACCACTACCTTCTGGGGGCTACACCAAAGAAACACAACCCTAAACatagagagagacgaggagatgaGCAAGCTGAACCCCCAAACTAAGACCCATGTCAATGGGAACGGCTGCATGGACAAGGAGACGACCAAAGACCTCCATAATGGTGTCAATGGGGTGGAGGCTTTATCCTATATGGAGGCTCCATCTAATCTCCAAAATGGCGGCCACCCGACCTTTTCAAGCACCGGAATGGCAGTAGACCAAGAAAAGCCTTGGGTGGTCTGCTGTGGAGGagtaggaggggagaaggggaggtgtGTGAGGGTTCTAGAGTGGTTCTGTGGGTTTAAGGAGGAACCGGCTAAGACCCGGCCCAGATCAGCCGAGGAGGAAGAGAGGCTTTTGCAGGAGATGCTCCAGGAGACCCCCAGAACCAGATTCATCCTCAACATGGGCCTGGTGCTGGTCTGCTCTGTGGGGGTGTTCCTCTTCATCTACTTCTCTCTGTAGGAGGGGATCTCAACCTGTGACATACACAATATAGTTTATATGTAATATGTCTACATGTGACATCTAAAGAAGTGTTTCTTAACTTGTGTTTCCTACGCCACCCCAAAAGTTTAAGCCcagtgaatcaggtgtgcttgagCTGGGCTAGAACAAAAATGTCCAACCTTGGTGGTCCTCCAAcatggactcaggggtagacgtaacatagcaAACGTAAATCTAGTATGTAAatgttacatttcgtatggtaCAGTGCcttaaagtattcacaccgctggactttttcaaaatgttgttacaaagtgggattaaaatcgatgtaattgtcattttttttgtcaacgatttACACTACATACTCATGTcaaagtgagagaaaaaaaattcaCAACAAGTTAAATGGAAAATAAAACCCTCATATATTttcattagataagtattcaaccccctgagtcaatacacgtTAGAATTACCTTTGGAAGCAATTAcagctttctgggtaagtctcgaagagctttgcaaacctggattgtataatatttgcccattcttttaaaaatgattcaagctctgtcaagttggttgttgaccattgctaaacagccattttAAAGTCAAATCTGTAACTAGGGCACTCAAACATTCAATATTGTATTGGTAggtaactccagtgtatatttggcctttcattttaggctattgtcctgctgaaaggtggatttgtctctgtctgttggaaagcagacaaccggGTTTTCCTTTAGGActatgcctgtgcttagctctattccctTTCTTTTAATCCAAAATAAAACTCCcaagtcctt

Function

NR:

description
sodium/myo-inositol cotransporter-like

GO: NA

KEGG:

id description
K14383 SLC5A3, SMIT; solute carrier family 5 (sodium/myo-inositol cotransporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608544.2 True 3426 mRNA 0.51 2 13430523 13443490

Neighbor

gene id symbol gene type direction distance location
LOC110527334 LOC106575514 coding upstream 9245 13371737 ~ 13421278 (+)
LOC110527332 LOC106575562 coding upstream 58537 13367629 ~ 13371986 (+)
LOC100136183 LOC100380633 coding upstream 281047 13135560 ~ 13149476 (+)
LOC100136184 LOC100136184 coding upstream 299606 13117153 ~ 13130917 (+)
LOC110527329 LOC106574721 coding upstream 340172 13075980 ~ 13090351 (+)
LOC110527337 tgds coding downstream 8351 13451841 ~ 13460114 (+)
LOC110528759 LOC106575503 coding downstream 76783 13520273 ~ 13523716 (+)
LOC110527094 NA coding downstream 81010 13524500 ~ 13527438 (+)
LOC110527340 LOC106575504 coding downstream 109605 13553095 ~ 13566497 (+)
ebpl ebpl coding downstream 125820 13569310 ~ 13573701 (+)
G576172 LOC106575469 non-coding upstream 72480 13200491 ~ 13358043 (+)
G576171 NA non-coding upstream 94428 13333522 ~ 13336095 (+)
G576188 NA non-coding upstream 202341 13224462 ~ 13228182 (+)
G576173 NA non-coding upstream 218296 13190997 ~ 13212227 (+)
G576109 NA non-coding upstream 377339 13052860 ~ 13053184 (+)
G576292 NA non-coding downstream 283 13443773 ~ 13447070 (+)
G576238 NA non-coding downstream 17060 13460550 ~ 13461432 (+)
G576315 NA non-coding downstream 39734 13483224 ~ 13484753 (+)
G576707 NA non-coding downstream 72918 13516408 ~ 13516616 (+)
G576708 NA non-coding downstream 73198 13516688 ~ 13517159 (+)
G576161 NA other upstream 223034 13173312 ~ 13207489 (+)
G576160 NA other upstream 257449 13172784 ~ 13173074 (+)
G575758 NA other upstream 888042 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 961772 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1595208 11826502 ~ 11836170 (+)
G576241 LOC106575516 other downstream 43026 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 671846 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 702580 14146070 ~ 14159585 (+)
G577261 NA other downstream 729033 14172523 ~ 14180064 (+)
LOC118965342 NA other downstream 787227 14218353 ~ 14230983 (+)

Expression


Co-expression Network