LOC110527337 (tgds)


Basic Information

Item Value
gene id LOC110527337
gene name tgds
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13451841 ~ 13460114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608547.2
ATAAAGCGACAAAAGACTGTCGCAAAAGTTGCACATTACATTTTGCTGATGTTGGTTTCTACTGTATCAACTGCTTCTGACATGAACTGGTGACAACACAAACATCTGAGTAATGTAATCTAGCTGTTCGTTAACGTGTTGTCGATGTGCTTCGCTTTAGAATGGCCTCAATCACTTAAAATCAGTTCCCGCCTATAGTTTATGAGATTATCTCTCGTTTACTCAACAATAAGACACACTCCAGCACAGgtaagctagttagctagctaaggtaGGCATAATTTATGTCACTAGGCAAGCGCCTTTGGGCTTCAATGAAAACTGAAGATCCAGGAGAAGAGTTGTGAGGAGACATCAACAGGTTGTGCGAGGATGGACTTTGTCAAAACGGTCCTGGTGACTGGAGGGGCAGGTTTCATTGGGTCCCATTTTGTCTGCTCCCTAGTCAACAGGCACCCAGATTGGCGTATCATCAACTTTGACAATCTGGACTACTGTTCCAATCTCAGGAACCTGGAGTCTGTAGAGGAGAATGAGAACTACACCTTTATCAGGGGGGATATATGCAATCCACGCTTGGTAAACCACATCTTTGCAACAGAAAGCATCGACATCGTCTTTCACTTTGCGGCTCAAACACATGTTGAGACGTCCTTCGTATGGCCGTCCAGATACCACATGGTGAACGTGGAGGGGACAAGGGTGCTACTGAAAGAAGCTTTTGAGGCCAAGGTGGAGAAGTTTATTTACATTAGTACAGATGAGGTGTATGGAGAGAGTCTGTATAAGGAATTAGATGAAACCAGCCCAAGAAGACCCAACAACCCATACTCTGTGTCTAAAGCAGCTGCTGAGTGTCTTGTATTGTCCTACAGGGAGAGACACAAGTTTCCTGTTATAATAACAAGGAGCAATAATGTATATGGACCCAGACAGTACTTGGAGAAGgTCATTCCAAAATTCGTGTCCTTCCTTCAGCTGAACAAAAAATGTACCATCCAAGGGACCAGCCCCCAATCTCGCCACTTCCTGTACGTGGATGATGCCGTTGAAGCATTCCACACCATCCTGGAGAGGGGGACGGTGGGAGAAACCTACAACATCGGGACCGACTTCGAGATATCCATCATTCAACTAGCCAGAGAACTTATCAAGATGTGTGTGTTACAGGTCAGGCATGTACCTGATGCAGAACTGGACGACTGGCTGGAGTTTGTGCCTGACCGGCCAGTGGTTGACCTGAGGTACCCTGTGAACTGTGAGAAGCTGTGGAGGCTGGGCTGGAAGCCTGCAGTGTCATGGGCAGAGGGTATCAGAAGGACAGTCAAATGGTACCAAGAGAATCCAGACTTCTGGCCAGATGTCAAACCAGAAGACCAACCAATTACCTTTGAGCCCGATACCAGAGACCAATAAGCACATAGATCCTCTTCCTGTATTCGTGGtcaccaaccctgttcctggagagctacagggtGTGCTgacttttgttccagccctgtatTAACACATCTGGTTCAATTGATTAATCTTACTTAGGGTTGTTGACCTCCACTAGTCAAACCAGCATCTCAATCACTGTGGGTGTGCAAAGGAACACttatttttgtaaatgttttactAATGAAGGTGGAatggaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaa
>XM_021608548.2
AAAGCGACAAAAGACTGTCGCAAAAGTTGCACATTACATTTTGCTGATGTTGGTTTCTACTGTATCAACTGCTTCTGACATGAACTGGTGACAACACAAACATCTGAGTAATGTAATCTAGCTGTTCGTTAACGTGTTGTCGATGTGCTTCGCTTTAGAATGGCCTCAATCACTTAAAATCAGTTCCCGCCTATAGTTTATGAGATTATCTCTCGTTTACTCAACAATAAGACACACTCCAGCACAGgtaagctagttagctagctaaggtaGGCATAATTTATGTCACTAGGCAAGCGCCTTTGGGCTTCAATGAAAACTGAAGATCCAGGAGAAGAGTTGTGAGGAGACATCAACAGGTTGTGCGAGGATGGACTTTGTCAAAACGGTCCTGGTGACTGGAGGGGCAGGTTTCATTGGGTCCCATTTTGTCTGCTCCCTAGTCAACAGGCACCCAGATTGGCGTATCATCAACTTTGACAATCTGGACTACTGTTCCAATCTCAGGAACCTGGAGTCTGTAGAGGAGAATGAGAACTACACCTTTATCAGGGGGGATATATGCAATCCACGCTTGGTAAACCACATCTTTGCAACAGAAAGCATCGACATCGTCTTTCACTTTGCGGCTCAAACACATGTTGAGACGTCCTTCGTATGGCCGTCCAGATACCACATGGTGAACGTGGAGGGGACAAGGGTGCTACTGAAAGAAGCTTTTGAGGCCAAGGTGGAGAAGTTTATTTACATTAGTACAGATGAGGTGTATGGAGAGAGTCTGTATAAGGAATTAGATGAAACCAGCCCAAGAAGACCCAACAACCCATACTCTGTGTCTAAAGCAGCTGCTGAGTGTCTTGTATTGTCCTACAGGGAGAGACACAAGTTTCCTGTTATAATAACAAGGAGCAATAATGTATATGGACCCAGACAGTACTTGGAGAAGgTCATTCCAAAATTCGTGTCCTTCCTTCAGCTGAACAAAAAATGTACCATCCAAGGGACCAGCCCCCAATCTCGCCACTTCCTGTACGTGGATGATGCCGTTGAAGCATTCCACACCATCCTGGAGAGGGGGACGGTGGGAGAAACCTACAACATCGGGACCGACTTCGAGATATCCATCATTCAACTAGCCAGAGAACTTATCAAGATGGTCAGGCATGTACCTGATGCAGAACTGGACGACTGGCTGGAGTTTGTGCCTGACCGGCCAGTGGTTGACCTGAGGTACCCTGTGAACTGTGAGAAGCTGTGGAGGCTGGGCTGGAAGCCTGCAGTGTCATGGGCAGAGGGTATCAGAAGGACAGTCAAATGGTACCAAGAGAATCCAGACTTCTGGCCAGATGTCAAACCAGAAGACCAACCAATTACCTTTGAGCCCGATACCAGAGACCAATAAGCACATAGATCCTCTTCCTGTATTCGTGGtcaccaaccctgttcctggagagctacagggtGTGCTgacttttgttccagccctgtatTAACACATCTGGTTCAATTGATTAATCTTACTTAGGGTTGTTGACCTCCACTAGTCAAACCAGCATCTCAATCACTGTGGGTGTGCAAAGGAACACttatttttgtaaatgttttactAATGAAGGTGGAatggaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaa

Function

symbol description
tgds Predicted to enable dTDP-glucose 4,6-dehydratase activity. Predicted to act upstream of or within nucleotide-sugar metabolic process. Orthologous to human TGDS (TDP-glucose 4,6-dehydratase).

NR:

description
dTDP-D-glucose 4,6-dehydratase-like isoform X2

GO:

id name namespace
GO:0009225 nucleotide-sugar metabolic process biological_process
GO:0008460 dTDP-glucose 4,6-dehydratase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function

KEGG:

id description
K01710 rfbB, rmlB, rffG; dTDP-glucose 4,6-dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608547.2 False 1725 mRNA 0.46 12 13451841 13460114
XM_021608548.2 True 1711 mRNA 0.46 12 13451843 13460114

Neighbor

gene id symbol gene type direction distance location
LOC110527335 LOC106575499 coding upstream 8351 13430523 ~ 13443490 (+)
LOC110527334 LOC106575514 coding upstream 30563 13371737 ~ 13421278 (+)
LOC110527332 LOC106575562 coding upstream 79855 13367629 ~ 13371986 (+)
LOC100136183 LOC100380633 coding upstream 302365 13135560 ~ 13149476 (+)
LOC100136184 LOC100136184 coding upstream 320924 13117153 ~ 13130917 (+)
LOC110528759 LOC106575503 coding downstream 60159 13520273 ~ 13523716 (+)
LOC110527094 NA coding downstream 64386 13524500 ~ 13527438 (+)
LOC110527340 LOC106575504 coding downstream 92981 13553095 ~ 13566497 (+)
ebpl ebpl coding downstream 109196 13569310 ~ 13573701 (+)
LOC110527343 LOC106575507 coding downstream 114735 13574849 ~ 13583653 (+)
G576292 NA non-coding upstream 4771 13443773 ~ 13447070 (+)
G576172 LOC106575469 non-coding upstream 93798 13200491 ~ 13358043 (+)
G576171 NA non-coding upstream 115746 13333522 ~ 13336095 (+)
G576188 NA non-coding upstream 223659 13224462 ~ 13228182 (+)
G576173 NA non-coding upstream 239614 13190997 ~ 13212227 (+)
G576238 NA non-coding downstream 436 13460550 ~ 13461432 (+)
G576315 NA non-coding downstream 23110 13483224 ~ 13484753 (+)
G576707 NA non-coding downstream 56294 13516408 ~ 13516616 (+)
G576708 NA non-coding downstream 56574 13516688 ~ 13517159 (+)
G576161 NA other upstream 244352 13173312 ~ 13207489 (+)
G576160 NA other upstream 278767 13172784 ~ 13173074 (+)
G575758 NA other upstream 909360 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 983090 12400616 ~ 12474139 (+)
LOC110497002 il8r other upstream 1616526 11826502 ~ 11836170 (+)
G576241 LOC106575516 other downstream 26402 13486516 ~ 13489737 (+)
G577180 LOC106574637 other downstream 655222 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 685956 14146070 ~ 14159585 (+)
G577261 NA other downstream 712409 14172523 ~ 14180064 (+)
LOC118965342 NA other downstream 770603 14218353 ~ 14230983 (+)

Expression


Co-expression Network