LOC110528759 (LOC106575503)


Basic Information

Item Value
gene id LOC110528759
gene name LOC106575503
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 13520273 ~ 13523716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610894.2
GTCCAGGACACGTTCATGACTTATGAGATATACGATGATGTCATTACTCTGCGTCTTGTGCAGGAGGCATGCACTATGCTGGACATGCCTTCTGAGGTGGTGCTGAAGCTTTTCAGGGAGTACTTCTTCAGCTTCTGTAAGATGGCGGGGTACGACACCATGCTGCGTACGCTAGGGGGGAACCTGGTGGAATTCATTGAGAACCTGGATGCCCTTCACAGCTACCTGGCTCTCTCCTACCAGGAGATGAACGCTCCCTCGATCCGTGTGGAGAAGAACGATGATGGGAGGATGTTGCTTCATTACTACTCGGACAGGAAaggtctacagtgccttgcaaaaaGCATCAGGAAGTTCATCAACAGCCAGTTTGTCCTGAAGACCAGACGGGAGATGGTGCCCCTGGCCTCTCAGCATCAGTCGATGCTCAAACTCAGAGGTCAGATGGTGTGGATGGAGTCTCTGGGCTGTATGGTGTACCTGTGCTCTCCGAAGCTGCGCAGCCTGCAGGAGTTGGAGGAGAGGGGTCTGCACATCTCCGACATCGCCCAGCACGACACCACCCGGGACCTCATCCTGCTTAACCAACAGCGTCTGGCCGAGATGGAGCTGTCCAATCAGCTGGAGCGCAAAAAGGAGGAGCTGAGGATCCTCTCACGGCACCTCGAGGCGGAGAAGAAGAAGACGGAGACTCTGCTCTACGCCATGTTGCCTCGCCACGTAGCCAACCAGCTGAAGGAGGGCAAGAGGGTGGAAGCAGGTGAGTTCCAGGTGTGCACCATCCTGTTCAGTGATGTGGTCACCTTCACCAATATCTGTGCTGCCTGCAAGCCCAACCAGATCGTCAACATGCTCAACTCCATGTACTCCAAGTTCGACCGCCGTACCAGTGTCCATGACGTGTACAAgGTGGAGACTATTGGAGACGCCTACATGGTGGTGGGTGGGGTTCCTATTCCAGCTGACAGCCATGCAGAGGGGGTGGCCAACTTTGCCCTGGGTATGCGTATCGCTGCCCGGGAGGTGACCAACCCTATCACTGGGCAACCCATCCAGATTCGGGTGGGTCTGCACACAGGTCCAGTGCTGGCTGGTGTGGTAGGGGACAAGATGCCTCGATACTGCCTGTTTGGAGATACGGTGAACACTGCCTCCCGCATGGAGAGTCACGGAGTGCCTGACCACATACACCTCAGCCCCTTCACATACAGTGCGCTGGAAGATAAGCGCTTTGACATCCTGGAAAGAGGAGAGAAGGTGAAGGGGAAAGGCCTGATGACCACCTACTTCCTGCTGCAGaacctgtgtgtgtctgaggacACCATCTTGGCCAGAGGGACAGGAGAGCCCTGCGTGTACAGAGACAACCAGCAGGgggcgggagagagcgagagagACACAGAAGAACCAGACAGTGTGAGAAAGGAAGAAACGAATGGCCAAACCATGGCATCAGCTTCTTCTTCCAGTGACCTCACCAACGAAGACACACCTTTTCTGGGAGACACTACACCTTTTCAAAAGGGCCACCTCAACGACGTGAACTCACGATTCTGCCGACTGCTCTAA
>TU657762
ctacagtgccttgcaaaagtatttggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttggggaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcatgcaaattCCTCTGGTCTGGTAACAGCATCAGGCAGAGGCATTGGAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610894.2 False 1569 mRNA 0.55 12 13520273 13523716
TU657762 True 245 lncRNA 0.38 1 13521136 13521380

Neighbor

gene id symbol gene type direction distance location
LOC110527337 tgds coding upstream 60159 13451841 ~ 13460114 (+)
LOC110527335 LOC106575499 coding upstream 76783 13430523 ~ 13443490 (+)
LOC110527334 LOC106575514 coding upstream 98995 13371737 ~ 13421278 (+)
LOC110527332 LOC106575562 coding upstream 148287 13367629 ~ 13371986 (+)
LOC100136183 LOC100380633 coding upstream 370797 13135560 ~ 13149476 (+)
LOC110527094 NA coding downstream 784 13524500 ~ 13527438 (+)
LOC110527340 LOC106575504 coding downstream 29379 13553095 ~ 13566497 (+)
ebpl ebpl coding downstream 45594 13569310 ~ 13573701 (+)
LOC110527343 LOC106575507 coding downstream 51133 13574849 ~ 13583653 (+)
cdadc1 LOC106575509 coding downstream 60497 13584213 ~ 13594758 (+)
G576708 NA non-coding upstream 3114 13516688 ~ 13517159 (+)
G576707 NA non-coding upstream 3657 13516408 ~ 13516616 (+)
G576315 NA non-coding upstream 35520 13483224 ~ 13484753 (+)
G576238 NA non-coding upstream 58841 13460550 ~ 13461432 (+)
G576292 NA non-coding upstream 73203 13443773 ~ 13447070 (+)
G576715 NA non-coding downstream 275 13523991 ~ 13524206 (+)
G576727 NA non-coding downstream 8965 13532681 ~ 13533068 (+)
G576750 NA non-coding downstream 83788 13607504 ~ 13609765 (+)
G576756 LOC106575511 non-coding downstream 93872 13617588 ~ 13621304 (+)
G576767 NA non-coding downstream 107361 13631077 ~ 13631503 (+)
G576241 LOC106575516 other upstream 30536 13486516 ~ 13489737 (+)
G576161 NA other upstream 312784 13173312 ~ 13207489 (+)
G576160 NA other upstream 347199 13172784 ~ 13173074 (+)
G575758 NA other upstream 977792 12542017 ~ 12542481 (+)
LOC110528829 LOC106574706 other upstream 1051522 12400616 ~ 12474139 (+)
G577180 LOC106574637 other downstream 591620 14115016 ~ 14116345 (+)
LOC110527359 LOC106574634 other downstream 622354 14146070 ~ 14159585 (+)
G577261 NA other downstream 648807 14172523 ~ 14180064 (+)
LOC118965342 NA other downstream 707001 14218353 ~ 14230983 (+)
G577561 NA other downstream 882380 14406096 ~ 14406598 (+)

Expression


Co-expression Network