LOC110527369 (LOC106575456)


Basic Information

Item Value
gene id LOC110527369
gene name LOC106575456
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14903653 ~ 14912668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982699.1
CTTTGGGGGTGGAGACAGTCTGTAGCACGCCACCATCCCTTATTGGGTGACATCTGAAAGCTCTAGTCCTGATGGGCACTAGAGCAAGCGAGATACAACCCATACCCAAATCACAGTGTGGGCAACGGGTGAGCTGAGACTGAGTGTAGTTTACCCCGTCCAccatttaataaaaaatatatatcggGTATTTGTACTTTTCCATCCAATGGATGCAGCAGTGATGAACTCCCAGATAATGACGGATGTCAACGGCAACAGCAATGCCGCGAACGCCGAACTGGAGGTGAAAAAGCTCCAAGAGCTGGTTCGGAAATTGGAGCGGCAAAATGAGCAATTGAGGACGCGGGCGAACGGTTGCACTGGCAACCCCCACATTCTACCTCCCTCTCCGGCCTACATGGCCGGGAGCTACTGCATACCTAGTCCGTTACCGACGCTACTGTGCCAGTCTTCCTTGGAGTCATTTTTCCCGTTGGACGAACCGTTCGAATATTTACATTCGCATTATGTGGATACTGCTCTCGACACGGAGGCTGATTATATGGAACGTACGGTTCTGGATGAGGTGGACATTCTGGACCTAGATGCTCTATTCTCTATTGAAGACTCTGAAGCTACCTGGCTCTCATCCGGTCTTCCCTGCAGGCTGTATGTGTCAGCCAAGGCCCGGCTGTGGGGGGAGAGCCCTGTTACCCCCCTCCAGTGGAGCAGACAGGTCCTGGACAGCCCCAGAACAGAGGTGGAGTCGGCCCGCTCACTGTGCCTCAGGTTGGACCAAGTCCATAGGTGGCGGGGGGTCTTCTCCAGCCACTCTTCCCCTGCCCTCCCCCTGAGACGTGTAGCTGGAGTGTCCCCCCTCAGTGCCTCGTTCTCCAGGTCCTGCTCCACCCCTCCGCCCGCTGACAGACctgGCCGCAGCCTCCGGCGGTTCCTCCTCAGCCCCCAGTCTTCCATGGACAGTGAGCTCAGTGCCTCCGAGCTGGAGGATGACTCCATCACGCAGGGATACAAGCTGCAGGACCTTGTTGACGTCCAGGTCATGGCTCGTCTGCAGGAGGACAGTCTTCGTCAGGACTACGCCACCACCCCCACCTCCATCAACCGCCGCAGCGCCagcttctccttcctctcccttcagcACAACGGCGAGGCTGacctggaggaggaagaggatgaggaagagtacGGGCAGCTACCTCCTCCCCAGCCCCGTCTGACCCGTGTGGGACCAACCCTGCAGCGCGGCCTCTCCCACTCCCACACCTTCTCCAGCATACGGGACTGGAGGAGGAGCACAACCAGCCTCTCCAGCCCCTCCAGCCCTCAGTACCCCTCTGGAGGATTCTCCTATcagcccccacccccacccccaccccaggCCCTGGCCAGCCCCACACTCAGCACCTACACACCCGAACAACAGGGCTTCAGGCCTGGATCAGATAAGCTGCGGAGGAGCATGCCCAACCTGTTCAGGGCTCCCAGTGTGCCTAGTCCACTGAGCCCAGCCAATCACATCggctctccctccacccttcGGAACAGTCTGAGCTTCGACTCGTCCAATGGGCTGGCCAGCAGGCTACAGTCCTCCATCCCTTCACCCGGTCAGTTGCAGAACAGAGTCCAGAGTGTGGGGAACTTCCAGTCGTTGTCACGGCAACCCCTCAAAGCCACAGCCTACGTCAGCCCCACTGTGAAAGGGCCAGTTACCATGCCGACCTCCACCAGTCTGCAGTCCCTGAGCGGCATCCCCCTCCCCAGTAAACCAGCCGTGGGGGTTGGGGGCACTCCTACGCCCCCCCGGAGCAGTCTGCCCCGCCCCGCCTCCTTTATTGGGACCAGCTCCACACCTCGAAGCAAGATCGCCCAACCCACACGCAGTTTATTGACGCCTCCTAAGAGCTTGTCCAGCCTGAGTGCCCTACGAGACGGGAGCTGGAGGGATGGCTGCTACTGAGAGAGGCATGAATGGAGAGATGAGattcagagaagaagaagagatggCAATGTAGATAGACCCTGCTGGTTGGGGTCACTCACTGCCACACAAAGTCTTCTTGGGGAATTGAGAAGGCAGGTCAACCAAACTATAGGGAATAACAACCTTGTGTAGAACGCCCTCATGATTGGGTATGTGAGGTGTGGTCAGCACTCAGTCAAACATGCATTCTCCACCTGTCCAATTTGGTCTGTGCCAAGGGGAATCCCCCTGTTGATATTTTTATGCACTAAcaagttttaaccatgttatggtTACATTAACATACTAAAGAAAGAGCTGCCACTTTATGCTAATTAAGCCACATAATTAGTTTTTTTACTTTGGAATTCTGATTAATAAAAGGTGTATTTTCTCTTAATGGAGAGCACCAAATATGCTGCTAAAAAAAGTCTAAATCACTCCCTATTGTCTGGGTGGGTGTATTTGGTCTAATTTTTACATGGCAAGgtatatttaaaataaatattttatgaTTAGTGTAGAGACTAAAGTTAACTTTCAGTGTGCATTGTTGGGATGCTGATCGTATTGATGCAATATTCTTCatgatttattttacatttttattgtgAAGCATATTAACCAAATTTAAAGCTAACGTCTGAATCTGTTTACAAAATGTCTCACCAAGACAGGGAAATGACTTCAAGTTGTGTTTTGGACACTTTTTAAACTATAAAGATTCACTGGTATATCTATGAAATATTTGTAATTGTTGCACTGATTGTACAAGTGtgaattgaaatgtaattgatTTTGTTCCTATTATTTGTGATATTGCACTTTTATGGTTAATTATAATTTTGTTGATGAAGAGCACAGGGTAGATGTTTTGTTTTTTGGGATGAAGGATAAAGATCACTTATATTGCATTCTCTGTCTGTTTACTAATTTTTTCACTATTTCAAAAAAAGCAGGTTAGTCTTCATGGTACAcctcaccatctctttctccaaaacatttttttgactGTATTTAATTGAACGACTGTAGTTGTTTTAAAAACTAAAATTAAAGATTTTCAAATTATAAAAAAA
>XM_036982698.1
TTTGGGGGTGGAGACAGTCTGTAGCACGCCACCATCCCTTATTGGGTGACATCTGAAAGCTCTAGTCCTGATGGGCACTAGAGCAAGCGAGATACAACCCATACCCAAATCACAGTGTGGGCAACGGGTGAGCTGAGACTGAGTGTAGTTTACCCCGTCCAccatttaataaaaaatatatatcggGTATTTGTACTTTTCCATCCAATGGATGCAGCAGTGATGAACTCCCAGATAATGACGGATGTCAACGGCAACAGCAATGCCGCGAACGCCGAACTGGAGGTGAAAAAGCTCCAAGAGCTGGTTCGGAAATTGGAGCGGCAAAATGAGCAATTGAGGACGCGGGCGAACGGTTGCACTGGCAACCCCCACATTCTACCTCCCTCTCCGGCCTACATGGCCGGGAGCTACTGCATACCTAGTCCGTTACCGACGCTACTGTGCCAGTCTTCCTTGGAGTCATTTTTCCCGTTGGACGAACCGTTCGAATATTTACATTCGCATTATGTGGATACTGCTCTCGACACGGAGGCTGATTATATGGAACGTACGGTTCTGGATGAGGTGGACATTCTGGACCTAGATGCTCTATTCTCTATTGAAGACTCTGAAGCTACCTGGCTCTCATCCGGTCTTCCCTGCAGGCTGTATGTGTCAGCCAAGGCCCGGCTGTGGGGGGAGAGCCCTGTTACCCCCCTCCAGTGGAGCAGACAGGTCCTGGACAGCCCCAGAACAGAGGTGGAGTCGGCCCGCTCACTGTGCCTCAGGTTGGACCAAGTCCATAGGTGGCGGGGGGTCTTCTCCAGCCACTCTTCCCCTGCCCTCCCCCTGAGACGTGTAGCTGGAGTGTCCCCCCTCAGTGCCTCGTTCTCCAGGTCCTGCTCCACCCCTCCGCCCGCTGACAGACctgcctcattctcctcacccctccatcctctcctccacctgtcaCTGACTCCTGTAGGGACGGCTGAGAGAATTCCCACATTCCTCCCAGCCAATCACTCAGCCAATCGCAGCCGCAGCCTCCGGCGGTTCCTCCTCAGCCCCCAGTCTTCCATGGACAGTGAGCTCAGTGCCTCCGAGCTGGAGGATGACTCCATCACGCAGGGATACAAGCTGCAGGACCTTGTTGACGTCCAGGTCATGGCTCGTCTGCAGGAGGACAGTCTTCGTCAGGACTACGCCACCACCCCCACCTCCATCAACCGCCGCAGCGCCagcttctccttcctctcccttcagcACAACGGCGAGGCTGacctggaggaggaagaggatgaggaagagtacGGGCAGCTACCTCCTCCCCAGCCCCGTCTGACCCGTGTGGGACCAACCCTGCAGCGCGGCCTCTCCCACTCCCACACCTTCTCCAGCATACGGGACTGGAGGAGGAGCACAACCAGCCTCTCCAGCCCCTCCAGCCCTCAGTACCCCTCTGGAGGATTCTCCTATcagcccccacccccacccccaccccaggCCCTGGCCAGCCCCACACTCAGCACCTACACACCCGAACAACAGGGCTTCAGGCCTGGATCAGATAAGCTGCGGAGGAGCATGCCCAACCTGTTCAGGGCTCCCAGTGTGCCTAGTCCACTGAGCCCAGCCAATCACATCggctctccctccacccttcGGAACAGTCTGAGCTTCGACTCGTCCAATGGGCTGGCCAGCAGGCTACAGTCCTCCATCCCTTCACCCGGTCAGTTGCAGAACAGAGTCCAGAGTGTGGGGAACTTCCAGTCGTTGTCACGGCAACCCCTCAAAGCCACAGCCTACGTCAGCCCCACTGTGAAAGGGCCAGTTACCATGCCGACCTCCACCAGTCTGCAGTCCCTGAGCGGCATCCCCCTCCCCAGTAAACCAGCCGTGGGGGTTGGGGGCACTCCTACGCCCCCCCGGAGCAGTCTGCCCCGCCCCGCCTCCTTTATTGGGACCAGCTCCACACCTCGAAGCAAGATCGCCCAACCCACACGCAGTTTATTGACGCCTCCTAAGAGCTTGTCCAGCCTGAGTGCCCTACGAGACGGGAGCTGGAGGGATGGCTGCTACTGAGAGAGGCATGAATGGAGAGATGAGattcagagaagaagaagagatggCAATGTAGATAGACCCTGCTGGTTGGGGTCACTCACTGCCACACAAAGTCTTCTTGGGGAATTGAGAAGGCAGGTCAACCAAACTATAGGGAATAACAACCTTGTGTAGAACGCCCTCATGATTGGGTATGTGAGGTGTGGTCAGCACTCAGTCAAACATGCATTCTCCACCTGTCCAATTTGGTCTGTGCCAAGGGGAATCCCCCTGTTGATATTTTTATGCACTAAcaagttttaaccatgttatggtTACATTAACATACTAAAGAAAGAGCTGCCACTTTATGCTAATTAAGCCACATAATTAGTTTTTTTACTTTGGAATTCTGATTAATAAAAGGTGTATTTTCTCTTAATGGAGAGCACCAAATATGCTGCTAAAAAAAGTCTAAATCACTCCCTATTGTCTGGGTGGGTGTATTTGGTCTAATTTTTACATGGCAAGgtatatttaaaataaatattttatgaTTAGTGTAGAGACTAAAGTTAACTTTCAGTGTGCATTGTTGGGATGCTGATCGTATTGATGCAATATTCTTCatgatttattttacatttttattgtgAAGCATATTAACCAAATTTAAAGCTAACGTCTGAATCTGTTTACAAAATGTCTCACCAAGACAGGGAAATGACTTCAAGTTGTGTTTTGGACACTTTTTAAACTATAAAGATTCACTGGTATATCTATGAAATATTTGTAATTGTTGCACTGATTGTACAAGTGtgaattgaaatgtaattgatTTTGTTCCTATTATTTGTGATATTGCACTTTTATGGTTAATTATAATTTTGTTGATGAAGAGCACAGGGTAGATGTTTTGTTTTTTGGGATGAAGGATAAAGATCACTTATATTGCATTCTCTGTCTGTTTACTAATTTTTTCACTATTTCAAAAAAAGCAGGTTAGTCTTCATGGTACAcctcaccatctctttctccaaaacatttttttgactGTATTTAATTGAACGACTGTAGTTGTTTTAAAAACTAAAATTAAAGATTTTCAAATTATAAAAAAA
>XM_021608597.2
TGGGGGTGGAGACAGTCTGTAGCACGCCACCATCCCTTATTGGGTGACATCTGAAAGCTCTAGTCCTGATGGGCACTAGAGCAAGCGAGATACAACCCATACCCAAATCACAGTGTGGGCAACGGGTGAGCTGAGACTGAGTGTAGTTTACCCCGTCCAccatttaataaaaaatatatatcggGTATTTGTACTTTTCCATCCAATGGATGCAGCAGTGATGAACTCCCAGATAATGACGGATGTCAACGGCAACAGCAATGCCGCGAACGCCGAACTGGAGGTGAAAAAGCTCCAAGAGCTGGTTCGGAAATTGGAGCGGCAAAATGAGCAATTGAGGACGCGGGCGAACGGTTGCACTGGCAACCCCCACATTCTACCTCCCTCTCCGGCCTACATGGCCGGGAGCTACTGCATACCTAGTCCGTTACCGACGCTACTGTGCCAGTCTTCCTTGGAGTCATTTTTCCCGTTGGACGAACCGTTCGAATATTTACATTCGCATTATGTGGATACTGCTCTCGACACGGAGGCTGATTATATGGAACGTACGGTTCTGGATGAGGTGGACATTCTGGACCTAGATGCTCTATTCTCTATTGAAGACTCTGAAGCTACCTGGCTGTATGTGTCAGCCAAGGCCCGGCTGTGGGGGGAGAGCCCTGTTACCCCCCTCCAGTGGAGCAGACAGGTCCTGGACAGCCCCAGAACAGAGGTGGAGTCGGCCCGCTCACTGTGCCTCAGGTTGGACCAAGTCCATAGGTGGCGGGGGGTCTTCTCCAGCCACTCTTCCCCTGCCCTCCCCCTGAGACGTGTAGCTGGAGTGTCCCCCCTCAGTGCCTCGTTCTCCAGGTCCTGCTCCACCCCTCCGCCCGCTGACAGACctgcctcattctcctcacccctccatcctctcctccacctgtcaCTGACTCCTGTAGGGACGGCTGAGAGAATTCCCACATTCCTCCCAGCCAATCACTCAGCCAATCGCAGCCGCAGCCTCCGGCGGTTCCTCCTCAGCCCCCAGTCTTCCATGGACAGTGAGCTCAGTGCCTCCGAGCTGGAGGATGACTCCATCACGCAGGGATACAAGCTGCAGGACCTTGTTGACGTCCAGGTCATGGCTCGTCTGCAGGAGGACAGTCTTCGTCAGGACTACGCCACCACCCCCACCTCCATCAACCGCCGCAGCGCCagcttctccttcctctcccttcagcACAACGGCGAGGCTGacctggaggaggaagaggatgaggaagagtacGGGCAGCTACCTCCTCCCCAGCCCCGTCTGACCCGTGTGGGACCAACCCTGCAGCGCGGCCTCTCCCACTCCCACACCTTCTCCAGCATACGGGACTGGAGGAGGAGCACAACCAGCCTCTCCAGCCCCTCCAGCCCTCAGTACCCCTCTGGAGGATTCTCCTATcagcccccacccccacccccaccccaggCCCTGGCCAGCCCCACACTCAGCACCTACACACCCGAACAACAGGGCTTCAGGCCTGGATCAGATAAGCTGCGGAGGAGCATGCCCAACCTGTTCAGGGCTCCCAGTGTGCCTAGTCCACTGAGCCCAGCCAATCACATCggctctccctccacccttcGGAACAGTCTGAGCTTCGACTCGTCCAATGGGCTGGCCAGCAGGCTACAGTCCTCCATCCCTTCACCCGGTCAGTTGCAGAACAGAGTCCAGAGTGTGGGGAACTTCCAGTCGTTGTCACGGCAACCCCTCAAAGCCACAGCCTACGTCAGCCCCACTGTGAAAGGGCCAGTTACCATGCCGACCTCCACCAGTCTGCAGTCCCTGAGCGGCATCCCCCTCCCCAGTAAACCAGCCGTGGGGGTTGGGGGCACTCCTACGCCCCCCCGGAGCAGTCTGCCCCGCCCCGCCTCCTTTATTGGGACCAGCTCCACACCTCGAAGCAAGATCGCCCAACCCACACGCAGTTTATTGACGCCTCCTAAGAGCTTGTCCAGCCTGAGTGCCCTACGAGACGGGAGCTGGAGGGATGGCTGCTACTGAGAGAGGCATGAATGGAGAGATGAGattcagagaagaagaagagatggCAATGTAGATAGACCCTGCTGGTTGGGGTCACTCACTGCCACACAAAGTCTTCTTGGGGAATTGAGAAGGCAGGTCAACCAAACTATAGGGAATAACAACCTTGTGTAGAACGCCCTCATGATTGGGTATGTGAGGTGTGGTCAGCACTCAGTCAAACATGCATTCTCCACCTGTCCAATTTGGTCTGTGCCAAGGGGAATCCCCCTGTTGATATTTTTATGCACTAAcaagttttaaccatgttatggtTACATTAACATACTAAAGAAAGAGCTGCCACTTTATGCTAATTAAGCCACATAATTAGTTTTTTTACTTTGGAATTCTGATTAATAAAAGGTGTATTTTCTCTTAATGGAGAGCACCAAATATGCTGCTAAAAAAAGTCTAAATCACTCCCTATTGTCTGGGTGGGTGTATTTGGTCTAATTTTTACATGGCAAGgtatatttaaaataaatattttatgaTTAGTGTAGAGACTAAAGTTAACTTTCAGTGTGCATTGTTGGGATGCTGATCGTATTGATGCAATATTCTTCatgatttattttacatttttattgtgAAGCATATTAACCAAATTTAAAGCTAACGTCTGAATCTGTTTACAAAATGTCTCACCAAGACAGGGAAATGACTTCAAGTTGTGTTTTGGACACTTTTTAAACTATAAAGATTCACTGGTATATCTATGAAATATTTGTAATTGTTGCACTGATTGTACAAGTGtgaattgaaatgtaattgatTTTGTTCCTATTATTTGTGATATTGCACTTTTATGGTTAATTATAATTTTGTTGATGAAGAGCACAGGGTAGATGTTTTGTTTTTTGGGATGAAGGATAAAGATCACTTATATTGCATTCTCTGTCTGTTTACTAATTTTTTCACTATTTCAAAAAAAGCAGGTTAGTCTTCATGGTACAcctcaccatctctttctccaaaacatttttttgactGTATTTAATTGAACGACTGTAGTTGTTTTAAAAACTAAAATTAAAGATTTTCAAATTATAAAAAAA

Function

NR:

description
SLAIN motif-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K16580 SLAIN1_2; SLAIN motif-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982699.1 False 3045 mRNA 0.50 8 14903653 14912668
XM_036982698.1 False 3152 mRNA 0.50 9 14903654 14912668
XM_021608597.2 True 3126 mRNA 0.50 9 14903656 14912668

Neighbor

gene id symbol gene type direction distance location
LOC110527365 NA coding upstream 772 14877723 ~ 14902881 (+)
LOC110527366 LOC105019822 coding upstream 70331 14829976 ~ 14833322 (+)
LOC110527363 tm182 coding upstream 644140 14251286 ~ 14259513 (+)
LOC118965342 NA coding upstream 672670 14218353 ~ 14230983 (+)
LOC110527360 LOC106574621 coding upstream 737131 14161899 ~ 14166522 (+)
wbp4 LOC106592210 coding downstream 2040 14914708 ~ 14921041 (+)
LOC100136320 LOC100136320 coding downstream 9141 14921809 ~ 14927040 (+)
LOC110527376 LOC106575451 coding downstream 16533 14929201 ~ 14931750 (+)
LOC110519434 LOC106591654 coding downstream 79161 14991829 ~ 15002558 (+)
LOC110527389 LOC106575481 coding downstream 174790 15087458 ~ 15091885 (+)
G577888 NA non-coding upstream 13825 14888390 ~ 14889828 (+)
G577873 NA non-coding upstream 21346 14876748 ~ 14882307 (+)
G577870 NA non-coding upstream 34207 14869215 ~ 14869446 (+)
G577868 NA non-coding upstream 35932 14867499 ~ 14867721 (+)
G577836 NA non-coding upstream 100344 14803090 ~ 14803309 (+)
G577909 NA non-coding downstream 59957 14972625 ~ 15014535 (+)
G577927 NA non-coding downstream 106889 15019557 ~ 15020204 (+)
G577932 NA non-coding downstream 111992 15024660 ~ 15024868 (+)
G577960 NA non-coding downstream 168180 15080848 ~ 15081268 (+)
G577967 NA non-coding downstream 180454 15093122 ~ 15093386 (+)
G577561 NA other upstream 497055 14406096 ~ 14406598 (+)
G577261 NA other upstream 723589 14172523 ~ 14180064 (+)
LOC110527359 LOC106574634 other upstream 751029 14146070 ~ 14159585 (+)
G577180 LOC106574637 other upstream 787308 14115016 ~ 14116345 (+)
G577876 LOC106575485 other downstream 48537 14961205 ~ 14971607 (+)
G578031 NA other downstream 342503 15255171 ~ 15256207 (+)
G578389 NA other downstream 549577 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 580233 15492870 ~ 15498827 (+)

Expression


Co-expression Network