LOC110527376 (LOC106575451)


Basic Information

Item Value
gene id LOC110527376
gene name LOC106575451
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14929201 ~ 14931750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608610.2
CCCCACCGGAAACGTCCGCCAGGCCAAGAGAGTGCACGTGCTGAGCTGAGCGCGAAAACCAACTCTGTTTCGCGCTCAACAACAAACGTGTTAACATGGCCAACTCTGCTGGGATGACGGTGGAAAATGACATGACAGGGTCCCTTCCATGTATTGCTGTAGAGACACATGGAGGGCCTGACTTCTCTCTAACACAAGCTTTAGAAGATGTCTCTCAACAAGGATATGCCCAGATTGTGGCCCTCCGGGAGaaacaacaagtgctcagctCTCTCCAGGCCATACTATCAGACATTGAGAAGAAAGGCAAAGAAGCTGAAGTGGAGTTAAAATTCAACGTGAGGCAGATTCTCATCCTGGAGGGTGAGATGGAACACCTGCAGCGACACATGCAAGACCTGGGCTTGCGTTCTGTCACCGTCTACAACGAAAACACAGAGCTCCGACTGCTGatcgaggaagaggaggacaactTTAGCCGCGTGCTGGCCGGTTACAACACCTACCGGAACAAGATGGAGGGCCACCGGACAGCCGTCTTGCAAGCAGAGAGCCAGATGAGGGCTCACAGGGAGCTAGTGGAGAAGAGGGCTCTGGTCAGAGTgctcacagagaggagagaggagctgagggCCGACCTGGAGAACCCAGAGGGGAATGCTGTGAAGCAGGCACAGAAAGAGTTGGATGACATGAGGGGGCAGATCTCAGACCGGAGGAAGATGGTGACTGAGAGAAGAGAGCTCATCCTGAAGGAGTTTGAGAGTCACACACTGATCAAGAAGCATATCGAGATCCAGAACAGACGGTACGATGCCATCGTGAAGCGTCTCCACTGCCAACTGATGAAGGCCCAGTCCGGCCACAGGCAGTTGTCTGATGATATCTaccacatggagagagagatccAGGACCTCAAGAGACACCTCGAGGTGCCATAAGTTAGCATTCTGGTtcataaaactgtatgttttgtaGTATGACCTAAGGCTAGGAGTTTTCCCTAACCAAGACATACTTCAGGCCCTAGTGTAGGTCTGTGCATAACTGTTTTGTTGCTgttcattttctttttttacactTTTCTGTCTCATAGTTTTTTCAGTGAAAGTAATGAATTGGAAAGCCATTAAACAAAAATATGTCTTTACATAAAACTCCCTTTCCCTCCCCATTATAAATAACTTGGGTTTCCCCCCAAATTTAGAGGTAAAACTGTGACACTCACTGACCAGCAGAGGGCAATGGTGTCAACCAATTAAGAAATAGCAACTATTCCTGTGTTACTGTATAGAAGACAATAATCACTGTCAGTCACTTTGTAGACAAAACAATATTTATTGgtgtgtttctctcctgtctctcatcATCTTGACAAAAACAACAGATCAGAACAGGAGACAAACTgatgagatggagacgtgaaggAAACCTTTTATACATTAAACCATGGCAGGGATCGCCTTAGCGTAAATGCTGTACATGATAGAACCAACTACCGGCGGATTACACACACTAAGACACGCAACATCAGAGGAACAGAatactgagtcatcatcaacagtTTTAGGGTTAGAGAATAAAGTAGAGACCAacatttcctttctctctctttctctctccctctttctctctcacacatattAATAATTGATGGTGCTTTTAAACGGAACAAAAATAAGATGAAACAGGGTAGAAACGTGTCAgtgttcttgtttgtttgtgtgtgaacaCAGTGCCTTCTCATTATGTTCCCTTCCCGACATTAAAGAAGTCTCGGTCCCCAGagactctctttc

Function

NR:

description
coiled-coil domain-containing protein 122-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608610.2 True 1799 mRNA 0.46 5 14929201 14931750

Neighbor

gene id symbol gene type direction distance location
LOC100136320 LOC100136320 coding upstream 2161 14921809 ~ 14927040 (+)
wbp4 LOC106592210 coding upstream 8160 14914708 ~ 14921041 (+)
LOC110527369 LOC106575456 coding upstream 16533 14903653 ~ 14912668 (+)
LOC110527365 NA coding upstream 26320 14877723 ~ 14902881 (+)
LOC110527366 LOC105019822 coding upstream 95879 14829976 ~ 14833322 (+)
LOC110519434 LOC106591654 coding downstream 60079 14991829 ~ 15002558 (+)
LOC110527389 LOC106575481 coding downstream 155708 15087458 ~ 15091885 (+)
trnar-ccu NA coding downstream 396894 15328644 ~ 15328716 (+)
trnar-ccu-2 NA coding downstream 399344 15331094 ~ 15331164 (+)
trnar-ccu-3 NA coding downstream 402045 15333795 ~ 15333865 (+)
G577888 NA non-coding upstream 39373 14888390 ~ 14889828 (+)
G577873 NA non-coding upstream 46894 14876748 ~ 14882307 (+)
G577870 NA non-coding upstream 59755 14869215 ~ 14869446 (+)
G577868 NA non-coding upstream 61480 14867499 ~ 14867721 (+)
G577836 NA non-coding upstream 125892 14803090 ~ 14803309 (+)
G577909 NA non-coding downstream 40875 14972625 ~ 15014535 (+)
G577927 NA non-coding downstream 87807 15019557 ~ 15020204 (+)
G577932 NA non-coding downstream 92910 15024660 ~ 15024868 (+)
G577960 NA non-coding downstream 149098 15080848 ~ 15081268 (+)
G577967 NA non-coding downstream 161372 15093122 ~ 15093386 (+)
G577561 NA other upstream 522603 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 698269 14218353 ~ 14230983 (+)
G577261 NA other upstream 749137 14172523 ~ 14180064 (+)
LOC110527359 LOC106574634 other upstream 776577 14146070 ~ 14159585 (+)
G577180 LOC106574637 other upstream 812856 14115016 ~ 14116345 (+)
G577876 LOC106575485 other downstream 29455 14961205 ~ 14971607 (+)
G578031 NA other downstream 323421 15255171 ~ 15256207 (+)
G578389 NA other downstream 530495 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 561151 15492870 ~ 15498827 (+)

Expression


Co-expression Network