LOC110519434 (LOC106591654)


Basic Information

Item Value
gene id LOC110519434
gene name LOC106591654
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 14991829 ~ 15002558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982695.1
tCAGCATCTTTTTGCCTAAAATGAATAGCCTTTGCATTTAAAATAGAATGTTCTAAAAGGGGAATATATTCGAAGAAACACTCAGAAtcaaacagacacacatgctTTCACTCATGCACGCGCATACCCAAACACACACCAAAATCCATCGCTTTGTTTTTCCCAGCTTTATGGTGGTGGCACTCCTCCATTAGGAATTTGGAGTGGTGAGAGGAGGggcgtttgtgtatgtgtgaaggAGCAGTCGATCTCCTCCCCTCGTCTCCCCCCGCCCCCCATGCCTTTGTGTGCACGAGGCTCTCTGTGAGCGGCGGTTCTTCAAGTGCGATATCGGTTCGTTTCTGAACGCTGTTTGAGTTTGTGTGGGCTGTTCGAACATAGCGTGGCTGACTGGGACTGGGGTGAACCGGTAGAAGGCACGTGAAACCACTGAGTTTATTCACACATGCGCGATCAGAAGGGAAAATAACGGAGAAATATTGAATATAGGACTTTTCCCTTTCGTTTTACCCATCTATCATTCTCTCGTCCTCTCTATCCGTGGAGAAtctgaccaacccaaacaacctgatgtgtgtgtatatgtgttttagGGGCGTAAAACAACTGGCAGCGCGTGAAGATGGATTAACGTTTGAACGGAAAACTGGAGCAGCACGCTAGACCTCGGCGAGGGGGGAGGGCAAGACGGGCctctgcaaacacacacaacccgCGGGACAGAGACTCTGATTGGACCAACACCAGGATGATGTCGTCACCAAAAGCCAAGACCAAGAAGAAACCTCCCAAAGACAGCATGACACTTCTACCATGCTTCTACTTCATAGAGcTCCCCATcgtcctctcctcccttgtctctctctacttcatggAGTTGACAGACCTGTTGTCCCCGGCGACCCCTGTGTTCCATTGCTATGACCGTGACCTGTCGTTGCCCTACCTGGAGACAGGAGACGAACTGATCCCTCTGCTGATGTTACTGAGCCTGGCCTTCGCAGGACCGGCTGCCTcgatCATGCTAGGTGAAGGGCTGGTCTATTGTTACCAGTCCAGAGTCAAACAGAGTAAAGCTGAAGGATCCATCATCGCTGGAGGGTGTAACTTCAACTCCTTCCTACGGAGGACTGTTCGCTTTGTTGGTGTTCATGTGTTTGGTCTCCTGGCAACAGCCCTAATGACAGACATCATCCAATTGGCTACTGGTTATCCCACCCCTTTCTTCCTGACTGTCTGTCAGCCCAATTACACGCTGCCTGGGATATCATGTGACCAGAACAACTACATCACACAGGACATCTGCTCTGGGAAAGATCTGTATGCCATCCTGTCAGccaggAAAACATTTCCGTCCCAGCATGCAACGCTTTCTGGCTTCGCTGCTGTCTACATCTCTatgtattTGAACAGTGTGATCAGCAGTAGTACTAAGCTGGTGAAGCCGGTGCTGGTGTTTGGATACTGTCTGGCTGCAGGCATAGCCGGACTGACTCAGATCACACAACACCGCTGCCATCCCAGAGATGTCTATGTTGGCTACGCCATAGGAGCTGGcataggagtctacctggtgagtTCTCTGTATGCAGTAGGTAACTTCAGGTCATCCGAAGAGGACTGCCTCCCCCAGCCTGTCCGGAGGGCTGCGCCTCCCCCACAGCAGCAGAGGGAGGTGGTGGTGAGGGGAAGAGCCCAGAGAGGTCATGCTTCTCAGCACGGCTCTCTGTACCGCAGCAAGACACCCAGACCATCAGACAGCAGGGAGGAACTGGGCACTGGACGCTGCAAGGTTCGTAGGGAGAAGGCCAGCGTAGCATCTCTGAAGAGGGCCAGTGCTGACGTGGAGCTCCTGGCACCCCGCGGCCCCATGGGAAAGGAAACCATGGTAACATTCAGCAATACCTTACCCCGCGTCGCCAATGGCAGCAGCAGCACCTCGCCCCCCGGAGACGACTCCTCCAACCAGCGTCACATGACCTTCCACCTGTCCTTCGACCCCCGCAGGTCACAACCAAGGCTGCGACCACCACTGGTGCAGGAGTGGAGACAGCAGCGCTCTACGGAGAGACGGagcgaggaggagggagagacggacacATCTggcggaggagagggaggagcagggggagggggcgaggcaggggagacaggggtgatgaatcctccctccctctatccgaCGGTACAGTCGGCCAATAGAGCCGTTGCCACAGCTACCCCAGCGCCAGCCCCACTAGTGCATATCCCTAAGGAGGGGATTAGACACCCCCCTACTGTCTCCCCTCTAcctccttctgtctcctctctacctccccctgtctcACCTAAGAGCGCGGTGACACGTGCCAAGTTGATGTCACTTAACCAGGGAGGGGAACGAGTCAGGGAGGGGCCTATCCCTGTGACGACTCCGCGTGTGCCCCACCAGCTGCCCAATCAGCCGCCCAATCAGCCGCCCAATCAGCCGCGAGTGGCGCAGGTCATTGCCATGTCCAAGCAGCATGGACCAATCAGCTCCTCTGCCAAGGGCTCTGACTCCACCTCTTCCTGTGGGGGAGGGTCTTCAACAGGAAGCTCTGAGTCGCCGTACTACCGGGTCCCCTCCGACCGCGACAGCCACACCGGGAGTGTTACCGGGAGCGTTACCGGGAGTATTGTCACCATAGACGCTCACGCCCCTCATCACCCTGTGGTCAGGGTGTCTAGCAGTGTCAGTACCGGGAGTAACGGGACCCTGGGGGCCAGAGTAACAGCTGCCGGTAACGGGACCCCCTGGGAGCGGAGGAACACCACCAGCGGGAGCGTCGGTGAGCAGGGCCAGAGGGGGGCGCTGCAGCGCCAGGAGAAAGTCTCTGCACCGGAATATCGGGAATACCGAACACTTCCTGTGAAATCAGACTCtatctgctcctcctctcccagcCAGACTGATTCCTccaccctgcctccccctcctcaccccatctcctctccactccctcccttctcttccccccccctgcctccccctcctcaacccatctcctcccccctccctcccccttctcccccctcctactcacccctccctccccctcctccccacttctactcccctctccctccccctcctcatccagATCTGCTGTTGGACAGttactccccccccctcccccgctcTATGACCCTCCCCCGCCGGCCCACTGTCTCAGCCCACAGCCGCGCTGATCAAGAAGTCTATTACAAGACCATGCAGACGGAGAGGAGATTATAACGCGACATAGAGGAgttataatagacagtaacacTACTAAAAACAGACTACGAGGTCAGAAGAGAAAATAGGGGACCTTACAGAGCGAGAGGTTATAAGGCGACATAGATAAATTAAGATAGACAGTAGTACCTCTACATAACCATACAGTCAGGGGACGTTattaaatgtaaaacattttgggGAGACCTAACAGTCAGGGGAAGTTATTAAATGTGACACCGTTTGGGGAGACCTAACAGTCAGGAGAACTACTACATGACTTAAATGAGTGAGAGGAGGTTATGAGACAACTTAGGAGTTAAAATGTAATATAATGGAGGTTATAACTTGGCGTAGAGGAGTCACAATGATCCAGAACACTACTTCAATACTGAGAAAGGGTCCAGATGGAAACAGACAAATAGCTGATCTTCAAGACACTGCAGAGTAGGAGACGGACATGAGATGACTTAAAGAAGTTAAGATGCGACATAACAGCAAAACCTACTGCTAAGTCGGGGTCTAACAGTGGAGGTGGAGCGTGTCTGACTGAAGGTCTTCAGGAGCATGGAGACTGGATCACTAAAGACAACAGAAACAATAGCAGCTCTAGTAGTTGGTTTACCACCGACTACTATCTGACTAGACTATACAACTATACTGACTATACTCACCagctgtactatactatactatactgtatataggatcTCTCTCAGGTTTCCATTCCACTGACTTACTGTAGAGAccaagaagaggaggggaaaagGAGGAAGGAAAGTGAACATCTTGGAGAGGATTActacagtaaacaaagagggggaGACAAAGACTGGAGGGAACATTTGGCTTAACAACGTGAACagatccacacagacacacagacacacatagccgcgggaagtagtTTGCTGGTGGGGTTCCGCGCTACAGACCGCtaacacagtgcactacttttaggaAAATAGAATTTTGGAATTTTAGATATGATTTTTAATTcagattaaaacacacacacacacacacacacacacacacacacacacacacacacacacacatacagactcaACTCCAATTGTATAACATTTGTTGCTAATCAAACCCCCACTGACAATACAATAAGATAAATGGTGACTAAAGACTGTATAGACTTGTGGGGGTGGTCTGTGTGCATCGGTTGCCTAGCAGCAGAATGACTTGTTCTGTAGTGGATATCCTCTTTTGATAATAGAACTGTTGAATACTGGTGTTAGTctgcatgtgtatgtatgtgtgtgagggtgtgtctgtcttgcatgtgtgtttctgtgtgtgaatgagtgtattCTACTTCATTGTGTTTCTATGAACTTGCATTATGACTTCTAAGAAACAGAAATGCTGCCTTTTCCAGAGATGTCATTTATTTACCTTTTTGTCTTTATTACCAATGTAAATACTAATATTATATTACTGTCCTTTTTCATGGGCTACTGTTTTTTTAAACTTGTGTTTCCAGGTAATGGTTATAAACTCCTTGACTAA
>XM_036982696.1
tCAGCATCTTTTTGCCTAAAATGAATAGCCTTTGCATTTAAAATAGAATGTTCTAAAAGGGGAATATATTCGAAGAAACACTCAGAAtcaaacagacacacatgctTTCACTCATGCACGCGCATACCCAAACACACACCAAAATCCATCGCTTTGTTTTTCCCAGCTTTATGGTGGTGGCACTCCTCCATTAGGAATTTGGAGTGGTGAGAGGAGGggcgtttgtgtatgtgtgaaggAGCAGTCGATCTCCTCCCCTCGTCTCCCCCCGCCCCCCATGCCTTTGTGTGCACGAGGCTCTCTGTGAGCGGCGGTTCTTCAAGTGCGATATCGGTTCGTTTCTGAACGCTGTTTGAGTTTGTGTGGGCTGTTCGAACATAGCGTGGCTGACTGGGACTGGGGTGAACCGGTAGAAGGCACGTGAAACCACTGAGTTTATTCACACATGCGCGATCAGAAGGGAAAATAACGGAGAAATATTGAATATAGGACTTTTCCCTTTCGTTTTACCCATCTATCATTCTCTCGTCCTCTCTATCCGTGGAGAAtctgaccaacccaaacaacctgatgtgtgtgtatatgtgttttagGGGCGTAAAACAACTGGCAGCGCGTGAAGATGGATTAACGTTTGAACGGAAAACTGGAGCAGCACGCTAGACCTCGGCGAGGGGGGAGGGCAAGACGGGCctctgcaaacacacacaacccgCGGGACAGAGACTCTGATTGGACCAACACCAGGATGATGTCGTCACCAAAAGCCAAGACCAAGAAGAAACCTCCCAAAGACAGCATGACACTTCTACCATGCTTCTACTTCATAGAGcTCCCCATcgtcctctcctcccttgtctctctctacttcatggAGTTGACAGACCTGTTGTCCCCGGCGACCCCTGTGTTCCATTGCTATGACCGTGACCTGTCGTTGCCCTACCTGGAGACAGGAGACGAACTGATCCCTCTGCTGATGTTACTGAGCCTGGCCTTCGCAGGACCGGCTGCCTcgatCATGCTAGGTGAAGGGCTGGTCTATTGTTACCAGTCCAGAGTCAAACAGAGTAAAGCTGAAGGATCCATCATCGCTGGAGGGTGTAACTTCAACTCCTTCCTACGGAGGACTGTTCGCTTTGTTGGTGTTCATGTGTTTGGTCTCCTGGCAACAGCCCTAATGACAGACATCATCCAATTGGCTACTGGTTATCCCACCCCTTTCTTCCTGACTGTCTGTCAGCCCAATTACACGCTGCCTGGGATATCATGTGACCAGAACAACTACATCACACAGGACATCTGCTCTGGGAAAGATCTGTATGCCATCCTGTCAGccaggAAAACATTTCCGTCCCAGCATGCAACGCTTTCTGGCTTCGCTGCTGTCTACATCTCTatgtattTGAACAGTGTGATCAGCAGTAGTACTAAGCTGGTGAAGCCGGTGCTGGTGTTTGGATACTGTCTGGCTGCAGGCATAGCCGGACTGACTCAGATCACACAACACCGCTGCCATCCCAGAGATGTCTATGTTGGCTACGCCATAGGAGCTGGcataggagtctacctgTCTCTGTATGCAGTAGGTAACTTCAGGTCATCCGAAGAGGACTGCCTCCCCCAGCCTGTCCGGAGGGCTGCGCCTCCCCCACAGCAGCAGAGGGAGGTGGTGGTGAGGGGAAGAGCCCAGAGAGGTCATGCTTCTCAGCACGGCTCTCTGTACCGCAGCAAGACACCCAGACCATCAGACAGCAGGGAGGAACTGGGCACTGGACGCTGCAAGGTTCGTAGGGAGAAGGCCAGCGTAGCATCTCTGAAGAGGGCCAGTGCTGACGTGGAGCTCCTGGCACCCCGCGGCCCCATGGGAAAGGAAACCATGGTAACATTCAGCAATACCTTACCCCGCGTCGCCAATGGCAGCAGCAGCACCTCGCCCCCCGGAGACGACTCCTCCAACCAGCGTCACATGACCTTCCACCTGTCCTTCGACCCCCGCAGGTCACAACCAAGGCTGCGACCACCACTGGTGCAGGAGTGGAGACAGCAGCGCTCTACGGAGAGACGGagcgaggaggagggagagacggacacATCTggcggaggagagggaggagcagggggagggggcgaggcaggggagacaggggtgatgaatcctccctccctctatccgaCGGTACAGTCGGCCAATAGAGCCGTTGCCACAGCTACCCCAGCGCCAGCCCCACTAGTGCATATCCCTAAGGAGGGGATTAGACACCCCCCTACTGTCTCCCCTCTAcctccttctgtctcctctctacctccccctgtctcACCTAAGAGCGCGGTGACACGTGCCAAGTTGATGTCACTTAACCAGGGAGGGGAACGAGTCAGGGAGGGGCCTATCCCTGTGACGACTCCGCGTGTGCCCCACCAGCTGCCCAATCAGCCGCCCAATCAGCCGCCCAATCAGCCGCGAGTGGCGCAGGTCATTGCCATGTCCAAGCAGCATGGACCAATCAGCTCCTCTGCCAAGGGCTCTGACTCCACCTCTTCCTGTGGGGGAGGGTCTTCAACAGGAAGCTCTGAGTCGCCGTACTACCGGGTCCCCTCCGACCGCGACAGCCACACCGGGAGTGTTACCGGGAGCGTTACCGGGAGTATTGTCACCATAGACGCTCACGCCCCTCATCACCCTGTGGTCAGGGTGTCTAGCAGTGTCAGTACCGGGAGTAACGGGACCCTGGGGGCCAGAGTAACAGCTGCCGGTAACGGGACCCCCTGGGAGCGGAGGAACACCACCAGCGGGAGCGTCGGTGAGCAGGGCCAGAGGGGGGCGCTGCAGCGCCAGGAGAAAGTCTCTGCACCGGAATATCGGGAATACCGAACACTTCCTGTGAAATCAGACTCtatctgctcctcctctcccagcCAGACTGATTCCTccaccctgcctccccctcctcaccccatctcctctccactccctcccttctcttccccccccctgcctccccctcctcaacccatctcctcccccctccctcccccttctcccccctcctactcacccctccctccccctcctccccacttctactcccctctccctccccctcctcatccagATCTGCTGTTGGACAGttactccccccccctcccccgctcTATGACCCTCCCCCGCCGGCCCACTGTCTCAGCCCACAGCCGCGCTGATCAAGAAGTCTATTACAAGACCATGCAGACGGAGAGGAGATTATAACGCGACATAGAGGAgttataatagacagtaacacTACTAAAAACAGACTACGAGGTCAGAAGAGAAAATAGGGGACCTTACAGAGCGAGAGGTTATAAGGCGACATAGATAAATTAAGATAGACAGTAGTACCTCTACATAACCATACAGTCAGGGGACGTTattaaatgtaaaacattttgggGAGACCTAACAGTCAGGGGAAGTTATTAAATGTGACACCGTTTGGGGAGACCTAACAGTCAGGAGAACTACTACATGACTTAAATGAGTGAGAGGAGGTTATGAGACAACTTAGGAGTTAAAATGTAATATAATGGAGGTTATAACTTGGCGTAGAGGAGTCACAATGATCCAGAACACTACTTCAATACTGAGAAAGGGTCCAGATGGAAACAGACAAATAGCTGATCTTCAAGACACTGCAGAGTAGGAGACGGACATGAGATGACTTAAAGAAGTTAAGATGCGACATAACAGCAAAACCTACTGCTAAGTCGGGGTCTAACAGTGGAGGTGGAGCGTGTCTGACTGAAGGTCTTCAGGAGCATGGAGACTGGATCACTAAAGACAACAGAAACAATAGCAGCTCTAGTAGTTGGTTTACCACCGACTACTATCTGACTAGACTATACAACTATACTGACTATACTCACCagctgtactatactatactatactgtatataggatcTCTCTCAGGTTTCCATTCCACTGACTTACTGTAGAGAccaagaagaggaggggaaaagGAGGAAGGAAAGTGAACATCTTGGAGAGGATTActacagtaaacaaagagggggaGACAAAGACTGGAGGGAACATTTGGCTTAACAACGTGAACagatccacacagacacacagacacacatagccgcgggaagtagtTTGCTGGTGGGGTTCCGCGCTACAGACCGCtaacacagtgcactacttttaggaAAATAGAATTTTGGAATTTTAGATATGATTTTTAATTcagattaaaacacacacacacacacacacacacacacacacacacacacacacacacacacatacagactcaACTCCAATTGTATAACATTTGTTGCTAATCAAACCCCCACTGACAATACAATAAGATAAATGGTGACTAAAGACTGTATAGACTTGTGGGGGTGGTCTGTGTGCATCGGTTGCCTAGCAGCAGAATGACTTGTTCTGTAGTGGATATCCTCTTTTGATAATAGAACTGTTGAATACTGGTGTTAGTctgcatgtgtatgtatgtgtgtgagggtgtgtctgtcttgcatgtgtgtttctgtgtgtgaatgagtgtattCTACTTCATTGTGTTTCTATGAACTTGCATTATGACTTCTAAGAAACAGAAATGCTGCCTTTTCCAGAGATGTCATTTATTTACCTTTTTGTCTTTATTACCAATGTAAATACTAATATTATATTACTGTCCTTTTTCATGGGCTACTGTTTTTTTAAACTTGTGTTTCCAGGTAATGGTTATAAACTCCTTGACTAA

Function

NR:

description
PREDICTED: lipid phosphate phosphatase-related protein type 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982695.1 False 4765 mRNA 0.51 11 14991829 15002558
XM_036982696.1 True 4759 mRNA 0.51 11 14991829 15002558

Neighbor

gene id symbol gene type direction distance location
LOC110527376 LOC106575451 coding upstream 60079 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 64789 14921809 ~ 14927040 (+)
wbp4 LOC106592210 coding upstream 70788 14914708 ~ 14921041 (+)
LOC110527369 LOC106575456 coding upstream 79161 14903653 ~ 14912668 (+)
LOC110527365 NA coding upstream 88948 14877723 ~ 14902881 (+)
LOC110527389 LOC106575481 coding downstream 84900 15087458 ~ 15091885 (+)
trnar-ccu NA coding downstream 326086 15328644 ~ 15328716 (+)
trnar-ccu-2 NA coding downstream 328536 15331094 ~ 15331164 (+)
trnar-ccu-3 NA coding downstream 331237 15333795 ~ 15333865 (+)
trnar-ccu-4 NA coding downstream 332603 15335161 ~ 15335233 (+)
G577909 NA non-coding upstream 17225 14972625 ~ 15014535 (+)
G577888 NA non-coding upstream 102001 14888390 ~ 14889828 (+)
G577873 NA non-coding upstream 109522 14876748 ~ 14882307 (+)
G577870 NA non-coding upstream 122383 14869215 ~ 14869446 (+)
G577868 NA non-coding upstream 124108 14867499 ~ 14867721 (+)
G577927 NA non-coding downstream 16999 15019557 ~ 15020204 (+)
G577932 NA non-coding downstream 22102 15024660 ~ 15024868 (+)
G577960 NA non-coding downstream 78290 15080848 ~ 15081268 (+)
G577967 NA non-coding downstream 90564 15093122 ~ 15093386 (+)
G577968 LOC106591672 non-coding downstream 91668 15094226 ~ 15100578 (+)
G577876 LOC106575485 other upstream 20222 14961205 ~ 14971607 (+)
G577561 NA other upstream 585231 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 760897 14218353 ~ 14230983 (+)
G577261 NA other upstream 811765 14172523 ~ 14180064 (+)
LOC110527359 LOC106574634 other upstream 839205 14146070 ~ 14159585 (+)
G578031 NA other downstream 252613 15255171 ~ 15256207 (+)
G578389 NA other downstream 459687 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 490343 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 991100 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 1043725 16046065 ~ 16048048 (+)

Expression


Co-expression Network