LOC110527389 (LOC106575481)


Basic Information

Item Value
gene id LOC110527389
gene name LOC106575481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15087458 ~ 15091885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982714.1
AAGCTTCTCTTTAGAAGTGGAGCCTCTCCAAACTGACAGGACTACACAACAGACCCAggagagacaacacacagttCTAGGATTACTTCTTGAGGAATATTCTAATCGAAAACTCACACTAACTTCACACAGCATTTGGCTATCATTTTCTTCTGTTTAACAGTTTTCACCAGGATTTGTACAACACAGGACTATTTTGAAATCATTACAATTCCTTTCACAATAGTCCCACAGGCGTTGTGAGCCTGGCAAGCGAGGCTACTTTCACACAAGCTTCAACGTATCTTTAAAGTATCATCAGTTGTTTTTGGACTATTTGGGCTGTGGACTGTCCAATTCACCGTCTTGAGTCACTCTGACTGCCTGGACCATTTTAGGTTTTTCTAAACAGTTTTTGGAGACTATTCTACCCTAGGACTACCCTACCTCTCATTGCCATGGCAAACAGCTGTCTCCAGCTCAGCGGTTTTGTGATGAGTTGTATCGGCTGGGTCGGGATCCTTATCGCCACGGCCACGAACGACTGGGTAGTGACATGTAAATACGGCATGAACACCTGCAAGAAGATGGACGAGTTAGGAGCCAAGGGCCTGTGGGCTGAATGTGTCATTTCAACCGCCCTCTATCACTGTATATCACTGACACAGATATTGGACCTACCGGcATACATCCAGACGTCGAGGGCATTGATGATAACTGGATCCCTCCTGGGGCTGCCTGCAGTGGGGATGGTCCTAACAGCCATGCCCTGCATCTCTCTGGGTGATGAGCCTCAGTCAGCCAAGAACAAACGATCCCTACTTGGGGGAGTTCTCATACTGCTAGTGGCTCTCTGTGGGGGGGTGTCCACAGTATGGTTTCCTATTGGAGCCCACCAGGACCAGGGACTCATGTCGTTTGGGTTCAGCCTGTACGCTGGCTGGGTGGGCACGGCCTTCTGTCTCCTGGGAGGCGCCATGATCACCTGCTGTTCTACTGAACCGTCCCAACACtacaatcaccatgacaacaacagGTTCTACTACTCCAAAGGACAGGGGCCTGGCAACCCTGTTCCACCCTCCACTAACCACGCCAAGAGTGCCCATGTTTAGACACACATGAagtacatgcatgcacacacacacacacatgcacacacagacacacaccagtgGAGAGTAACTCAGAGCAGCGTCTAACCTGGTGACTGAGGAGAAACCAAGGGGTCCTGATCAGGACAACCCTGCTCTGATGAAGGACTTATTTTCATCTCTTTGTTATACAATGAAGGCTAGGTTTAGGGTTCTTTGTTCTACAatgaaggctagggttagggttagggttctttgTTCTACAatgaaggctagggttagggttagggttctttgTTCTACAatgaaggctagggttagggttagggttctttgTTCTACAatgaaggctagggttagggttagggttctttgTTCTACAatgaaggctagggttagggttagggttcttcGTTCTACAatgaaggctagggttagggttagggttctttattttacaatgaaGGACAACTGTGGATGGAAAGTACTGTACACCTATCAGTGCATTTTATAGAAAATAAGCGTACCTTTTTTAATAAAGACTGTCATGATTTGTAGTTTTTTGATAAAT

Function

NR:

description
claudin-11-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982714.1 True 1644 mRNA 0.47 3 15087458 15091885

Neighbor

gene id symbol gene type direction distance location
LOC110519434 LOC106591654 coding upstream 84900 14991829 ~ 15002558 (+)
LOC110527376 LOC106575451 coding upstream 155708 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 160418 14921809 ~ 14927040 (+)
wbp4 LOC106592210 coding upstream 166417 14914708 ~ 14921041 (+)
LOC110527369 LOC106575456 coding upstream 174790 14903653 ~ 14912668 (+)
trnar-ccu NA coding downstream 236759 15328644 ~ 15328716 (+)
trnar-ccu-2 NA coding downstream 239209 15331094 ~ 15331164 (+)
trnar-ccu-3 NA coding downstream 241910 15333795 ~ 15333865 (+)
trnar-ccu-4 NA coding downstream 243276 15335161 ~ 15335233 (+)
trnar-ccu-5 NA coding downstream 255758 15347643 ~ 15347715 (+)
G577960 NA non-coding upstream 6190 15080848 ~ 15081268 (+)
G577932 NA non-coding upstream 62590 15024660 ~ 15024868 (+)
G577927 NA non-coding upstream 67254 15019557 ~ 15020204 (+)
G577909 NA non-coding upstream 112854 14972625 ~ 15014535 (+)
G577888 NA non-coding upstream 197630 14888390 ~ 14889828 (+)
G577967 NA non-coding downstream 1237 15093122 ~ 15093386 (+)
G577968 LOC106591672 non-coding downstream 2341 15094226 ~ 15100578 (+)
G577944 NA non-coding downstream 10865 15102750 ~ 15103287 (+)
G578005 NA non-coding downstream 90276 15182161 ~ 15184248 (+)
G578011 NA non-coding downstream 101316 15193201 ~ 15193739 (+)
G577876 LOC106575485 other upstream 115851 14961205 ~ 14971607 (+)
G577561 NA other upstream 680860 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 856526 14218353 ~ 14230983 (+)
G577261 NA other upstream 907394 14172523 ~ 14180064 (+)
G578031 NA other downstream 163286 15255171 ~ 15256207 (+)
G578389 NA other downstream 370360 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 401016 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 901773 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 954398 16046065 ~ 16048048 (+)

Expression


Co-expression Network