trnar-ccu-2


Basic Information

Item Value
gene id trnar-ccu-2
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15331094 ~ 15331164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnar-ccu-2
gccccagtggcctaatggaaggcactggcctcctaagccagggattgtgggttcaagtcccatctggggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu-2 True 71 mRNA 0.58 1 15331094 15331164

Neighbor

gene id symbol gene type direction distance location
trnar-ccu NA coding upstream 2378 15328644 ~ 15328716 (+)
LOC110527389 LOC106575481 coding upstream 239209 15087458 ~ 15091885 (+)
LOC110519434 LOC106591654 coding upstream 328536 14991829 ~ 15002558 (+)
LOC110527376 LOC106575451 coding upstream 399344 14929201 ~ 14931750 (+)
LOC100136320 LOC100136320 coding upstream 404054 14921809 ~ 14927040 (+)
trnar-ccu-3 NA coding downstream 2631 15333795 ~ 15333865 (+)
trnar-ccu-4 NA coding downstream 3997 15335161 ~ 15335233 (+)
trnar-ccu-5 NA coding downstream 16479 15347643 ~ 15347715 (+)
trnar-ccu-6 NA coding downstream 31860 15363024 ~ 15363096 (+)
trnar-ccu-7 NA coding downstream 32673 15363837 ~ 15363909 (+)
G578057 NA non-coding upstream 38140 15292568 ~ 15292954 (+)
G578029 NA non-coding upstream 86458 15244091 ~ 15244636 (+)
G578027 NA non-coding upstream 91170 15238123 ~ 15239924 (+)
G578016 NA non-coding upstream 103026 15198255 ~ 15228068 (+)
G578290 NA non-coding downstream 4818 15335982 ~ 15346591 (+)
G578297 NA non-coding downstream 21922 15353086 ~ 15354815 (+)
G578303 NA non-coding downstream 44539 15375703 ~ 15380028 (+)
G578344 NA non-coding downstream 86633 15417797 ~ 15418683 (+)
G578383 NA non-coding downstream 110251 15441415 ~ 15442577 (+)
G578031 NA other upstream 74887 15255171 ~ 15256207 (+)
G577909 NA other upstream 316559 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 359487 14961205 ~ 14971607 (+)
G577561 NA other upstream 924496 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1100162 14218353 ~ 14230983 (+)
G578389 NA other downstream 131081 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 161737 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 662494 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 715119 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 1126881 16457220 ~ 16463699 (+)

Expression


Co-expression Network