trnar-ccu-3


Basic Information

Item Value
gene id trnar-ccu-3
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15333795 ~ 15333865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnar-ccu-3
gccccagtggcctaatggaaggcactggcctcctaagccagggattgtgggttcaagtcccatctggggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu-3 True 71 mRNA 0.58 1 15333795 15333865

Neighbor

gene id symbol gene type direction distance location
trnar-ccu-2 NA coding upstream 2631 15331094 ~ 15331164 (+)
trnar-ccu NA coding upstream 5079 15328644 ~ 15328716 (+)
LOC110527389 LOC106575481 coding upstream 241910 15087458 ~ 15091885 (+)
LOC110519434 LOC106591654 coding upstream 331237 14991829 ~ 15002558 (+)
LOC110527376 LOC106575451 coding upstream 402045 14929201 ~ 14931750 (+)
trnar-ccu-4 NA coding downstream 1296 15335161 ~ 15335233 (+)
trnar-ccu-5 NA coding downstream 13778 15347643 ~ 15347715 (+)
trnar-ccu-6 NA coding downstream 29159 15363024 ~ 15363096 (+)
trnar-ccu-7 NA coding downstream 29972 15363837 ~ 15363909 (+)
trnar-ccu-8 NA coding downstream 86989 15420854 ~ 15420926 (+)
G578057 NA non-coding upstream 40841 15292568 ~ 15292954 (+)
G578029 NA non-coding upstream 89159 15244091 ~ 15244636 (+)
G578027 NA non-coding upstream 93871 15238123 ~ 15239924 (+)
G578016 NA non-coding upstream 105727 15198255 ~ 15228068 (+)
G578290 NA non-coding downstream 2117 15335982 ~ 15346591 (+)
G578297 NA non-coding downstream 19221 15353086 ~ 15354815 (+)
G578303 NA non-coding downstream 41838 15375703 ~ 15380028 (+)
G578344 NA non-coding downstream 83932 15417797 ~ 15418683 (+)
G578383 NA non-coding downstream 107550 15441415 ~ 15442577 (+)
G578031 NA other upstream 77588 15255171 ~ 15256207 (+)
G577909 NA other upstream 319260 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 362188 14961205 ~ 14971607 (+)
G577561 NA other upstream 927197 14406096 ~ 14406598 (+)
LOC118965342 NA other upstream 1102863 14218353 ~ 14230983 (+)
G578389 NA other downstream 128380 15462245 ~ 15464365 (+)
LOC110528902 atr other downstream 159036 15492870 ~ 15498827 (+)
LOC110528906 LOC106574480 other downstream 659793 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 712418 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 1124180 16457220 ~ 16463699 (+)

Expression


Co-expression Network