LOC110528871 (LOC105019803)


Basic Information

Item Value
gene id LOC110528871
gene name LOC105019803
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15478409 ~ 15489245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982720.1
GGACCACGCCCATCCCAGAGTTCAATGGGCCGAAGGTCTTTTGTCCTCCACTGCTTCGGTCAAGACAGCGAGCAAGAAGACACCTGACCACCTCTAAACCTCTACCAAGCTTCTCCAGCCCTGTCTGATCCTCTGTTCACGCTGAACAACTCCTAGCCTCTGTTAGGCCAGTCGGCAGACCCGCTCTACTCAGCCAGGAGTGACTGAACGAGGGGAGCAGAGAGACCTTGGCCCCTCTCGCCCAGAACAGGACCAAACAGACACAGGCTTTTATGAAGgtaATCTAGATAGACTGTCCAGTATGGCGAACAAGGTGACCCAGATATCACGAGAGGACCTGGAGGAGCTCCGAGAGGCTTTCAACAGGATCGACACTGACAACAGTGGTTTTGTCAGTGACTTTGAGCTGCAGGAGCTGTTCAGAGAGGCTAGTTTCTCCATGCCAGGCTACAGAGTCAGAGACATAGTGGAGATCTTTGTAGCAGGAGACACCAACAAGGACGGGAAGATCAGCTTTGAAGAGTTCGTCTCGATCTACCAGGAGCTGAAGAGTAAGGAGCTCAGTGAGACGTTCAAGAAAACCATCGCCAGGAGAGAAGGGATACAATCCTTTGGAGGATTGTCAGGAATCTCCAGCGAGGGAACACAGCACTCCTACtcagatgaGGAGAAGGTGGCGTTTGTGAACTGGATCAATAAGTCTCTGGCCAAAGATGAAGACTGTAAACACCTTCTACCCATGAACCCTGACGGAGACAGTCTCTTCAAATCAGTAAAAGATGGGATCCTGCTCTgTAAAATGATCAACCTCTCCCAGTCTGACACCATCGATGAGAGAGTCATCAACACCAAGAAACACACCACCTTTACCATGACcgAGAACCTGATGCTGGCGATAAACTCTGCATTGTCTATCGGCTGTACCGTGGTCAACATCGACGCCCCTGACCTGATGGCTGGGAAACCCCACCTGGTGCTGGGCCTGCTTTGGCAGATTATCAAGATAGGACTGTTTGCTGACATAGAGATCAGCAGCAacgaagCTCTTATTAACCTGCTGTTTGAGGGGGAGGAGTTAGAGCACCTGATGTCATTGTCTCCTGAAGAACTGTTGCTACGCTGGGTCAACCATCACCTAGGCAACGCTGGGGCCCAACCAATCAGCAACTTCAGCCAAGACATCaagGATTCCAGGGCATATTTCACCCTGTTGGACCAGATCTCACCTAAAGGAGAGGACATAGACGAGATGGCCATCCACATCGATATGACCGGCATCAATgagcGTGACGACGAACGCAGGGCAGAGATGATGCTTCGCCAGGCAGCCCGTCTGGACTGCAGACAGTTTGTGTCTCCTATGGATGTGGTGTCTGGCAACAGCAAGCTGAACCTGGCCTTCGTAGCCAACCTCTTCAACACACACCCGGCCCTGAAGAGGACTAACAGCAACAACATAGACACAGCACTCATagaggGAGAATCCAGAGAGGAGAAAACATTCAGGAACTGGATGAACTCTCTGGGAGTTGCTCCCTATGTCAACCACCTCTACTGtgacCTGTGTGATGCGGTGGTGATTCTCCAGTTGTATGAGAAAGTCAACGTCCCTGTAGAGTGGAAAAAAGTCAACAGACCTCCATACTCTGCACTGGGCAGTAACATGaagaagttggaGAACTGTACCTATGCGGTGGAACTGGGTCGGAATAAAGCTCGATTCTCATTGGTGGGAATTGGAGGAGTGAATCTGAACGAGGGAAGTCCCATGCACACACTGGCTCTGGTCTGGCAGCTGATGAGGAGGTACACTCTCCAGGTGTTGTCTGATCTAGGAGATGGGGAGAAGATTGGAGACCAGATTATAATCAACTGGGTCAACACTCAGCTCAAAGAGGGAGGCAAGGACTCACAGATCAGCAGCTTCAAGgATAAGCTGATCAGTACTAGTCTCCCAGTGATAGACTTGTTAGACACCATCGCCCCCAAATCTATCAAAGAGGAGCTGGTGAAGAGAGGGGAGCTCAGCGATGCAGACAAGCTCAACAACGCCAAGTACGCTATCACGGTATCCAGGAAGATTGGAGCCCGTGTCTACGCTCTGCCTGATGACCTGGTCGAGGTGAAACCCAAGATGGTTCTGACTGTGTTCGCGTGCCTGATGGGGAGGGGCATGAAGAAAGCTGACGGCTGAACACACACGCACTCAGACACACTAACATACACTAACAGCCTGTCCCAATTGGCTCCTTACCCTttaccctcttcctgtctccTGCACATCTAGTCTGTGATTAGATCAGTGTATATAATCGGAGCACAGCTCATTGTTCATTAAACATTTCTTTCATACTGATAGAAAGCGAGCGGTTATGTGCCTAGTGTGCTCAAGGAGGCACTGATGGATCATTTTAATATCTCTAAATTATGTTAATGTATTAATTCATTCTGCGTAAAAGAAACAACAGAATAGAATTATAAATCTATGTAGAGGAGGGGACATGAGGGGAcattcaatcacacacacacgcacacacgcagacatacacacaccttACAGAATTAACAGTACAGACACACTACAGACCTGTAAATGGCGTGTTATTCTCTTGACTTAGTCAACTCAATCTACCCGAAGATAACAGACTGACATTTTGTTCATGCAAATTGTGTGCGTGTGGGAGGGGTGGTGCATTTTTGAATACTCAATCATAAACACATATAATAAAACCCATTTAAGAAA
>XM_036982719.1
CCCATCCCAGAGTTCAATGGGCCGAAGGTCTTTTGTCCTCCACTGCTTCGGTCAAGACAGCGAGCAAGAAGACACCTGACCACCTCTAAACCTCTACCAAGCTTCTCCAGCCCTGTCTGATCCTCTGTTCACGCGCAGCTGAACAACTCCTAGCCTCTGTTAGGCCAGTCGGCAGACCCGCTCTACTCAGCCAGGAGTGACTGAACGAGGGGAGCAGAGAGACCTTGGCCCCTCTCGCCCAGAACAGGACCAAACAGACACAGGCTTTTATGAAGgtaATCTAGATAGACTGTCCAGTATGGCGAACAAGGTGACCCAGATATCACGAGAGGACCTGGAGGAGCTCCGAGAGGCTTTCAACAGGATCGACACTGACAACAGTGGTTTTGTCAGTGACTTTGAGCTGCAGGAGCTGTTCAGAGAGGCTAGTTTCTCCATGCCAGGCTACAGAGTCAGAGACATAGTGGAGATCTTTGTAGCAGGAGACACCAACAAGGACGGGAAGATCAGCTTTGAAGAGTTCGTCTCGATCTACCAGGAGCTGAAGAGTAAGGAGCTCAGTGAGACGTTCAAGAAAACCATCGCCAGGAGAGAAGGGATACAATCCTTTGGAGGATTGTCAGGAATCTCCAGCGAGGGAACACAGCACTCCTACtcagatgaGGAGAAGGTGGCGTTTGTGAACTGGATCAATAAGTCTCTGGCCAAAGATGAAGACTGTAAACACCTTCTACCCATGAACCCTGACGGAGACAGTCTCTTCAAATCAGTAAAAGATGGGATCCTGCTCTgTAAAATGATCAACCTCTCCCAGTCTGACACCATCGATGAGAGAGTCATCAACACCAAGAAACACACCACCTTTACCATGACcgAGAACCTGATGCTGGCGATAAACTCTGCATTGTCTATCGGCTGTACCGTGGTCAACATCGACGCCCCTGACCTGATGGCTGGGAAACCCCACCTGGTGCTGGGCCTGCTTTGGCAGATTATCAAGATAGGACTGTTTGCTGACATAGAGATCAGCAGCAacgaagCTCTTATTAACCTGCTGTTTGAGGGGGAGGAGTTAGAGCACCTGATGTCATTGTCTCCTGAAGAACTGTTGCTACGCTGGGTCAACCATCACCTAGGCAACGCTGGGGCCCAACCAATCAGCAACTTCAGCCAAGACATCaagGATTCCAGGGCATATTTCACCCTGTTGGACCAGATCTCACCTAAAGGAGAGGACATAGACGAGATGGCCATCCACATCGATATGACCGGCATCAATgagcGTGACGACGAACGCAGGGCAGAGATGATGCTTCGCCAGGCAGCCCGTCTGGACTGCAGACAGTTTGTGTCTCCTATGGATGTGGTGTCTGGCAACAGCAAGCTGAACCTGGCCTTCGTAGCCAACCTCTTCAACACACACCCGGCCCTGAAGAGGACTAACAGCAACAACATAGACACAGCACTCATagaggGAGAATCCAGAGAGGAGAAAACATTCAGGAACTGGATGAACTCTCTGGGAGTTGCTCCCTATGTCAACCACCTCTACTGtgacCTGTGTGATGCGGTGGTGATTCTCCAGTTGTATGAGAAAGTCAACGTCCCTGTAGAGTGGAAAAAAGTCAACAGACCTCCATACTCTGCACTGGGCAGTAACATGaagaagttggaGAACTGTACCTATGCGGTGGAACTGGGTCGGAATAAAGCTCGATTCTCATTGGTGGGAATTGGAGGAGTGAATCTGAACGAGGGAAGTCCCATGCACACACTGGCTCTGGTCTGGCAGCTGATGAGGAGGTACACTCTCCAGGTGTTGTCTGATCTAGGAGATGGGGAGAAGATTGGAGACCAGATTATAATCAACTGGGTCAACACTCAGCTCAAAGAGGGAGGCAAGGACTCACAGATCAGCAGCTTCAAGgATAAGCTGATCAGTACTAGTCTCCCAGTGATAGACTTGTTAGACACCATCGCCCCCAAATCTATCAAAGAGGAGCTGGTGAAGAGAGGGGAGCTCAGCGATGCAGACAAGCTCAACAACGCCAAGTACGCTATCACGGTATCCAGGAAGATTGGAGCCCGTGTCTACGCTCTGCCTGATGACCTGGTCGAGGTGAAACCCAAGATGGTTCTGACTGTGTTCGCGTGCCTGATGGGGAGGGGCATGAAGAAAGCTGACGGCTGAACACACACGCACTCAGACACACTAACATACACTAACAGCCTGTCCCAATTGGCTCCTTACCCTttaccctcttcctgtctccTGCACATCTAGTCTGTGATTAGATCAGTGTATATAATCGGAGCACAGCTCATTGTTCATTAAACATTTCTTTCATACTGATAGAAAGCGAGCGGTTATGTGCCTAGTGTGCTCAAGGAGGCACTGATGGATCATTTTAATATCTCTAAATTATGTTAATGTATTAATTCATTCTGCGTAAAAGAAACAACAGAATAGAATTATAAATCTATGTAGAGGAGGGGACATGAGGGGAcattcaatcacacacacacgcacacacgcagacatacacacaccttACAGAATTAACAGTACAGACACACTACAGACCTGTAAATGGCGTGTTATTCTCTTGACTTAGTCAACTCAATCTACCCGAAGATAACAGACTGACATTTTGTTCATGCAAATTGTGTGCGTGTGGGAGGGGTGGTGCATTTTTGAATACTCAATCATAAACACATATAATAAAACCCATTTAAGAAA
>XM_036982721.1
CCAGAGTTCAATGGGCCGAAGGTCTTTTGTCCTCCACTGCTTCGGTCAAGACAGCGAGCAAGAAGACACCTGACCACCTCTAAACCTCTACCAAGCTTCTCCAGCCCTGTCTGATCCTCTGTTCACGgtaATCTAGATAGACTGTCCAGTATGGCGAACAAGGTGACCCAGATATCACGAGAGGACCTGGAGGAGCTCCGAGAGGCTTTCAACAGGATCGACACTGACAACAGTGGTTTTGTCAGTGACTTTGAGCTGCAGGAGCTGTTCAGAGAGGCTAGTTTCTCCATGCCAGGCTACAGAGTCAGAGACATAGTGGAGATCTTTGTAGCAGGAGACACCAACAAGGACGGGAAGATCAGCTTTGAAGAGTTCGTCTCGATCTACCAGGAGCTGAAGAGTAAGGAGCTCAGTGAGACGTTCAAGAAAACCATCGCCAGGAGAGAAGGGATACAATCCTTTGGAGGATTGTCAGGAATCTCCAGCGAGGGAACACAGCACTCCTACtcagatgaGGAGAAGGTGGCGTTTGTGAACTGGATCAATAAGTCTCTGGCCAAAGATGAAGACTGTAAACACCTTCTACCCATGAACCCTGACGGAGACAGTCTCTTCAAATCAGTAAAAGATGGGATCCTGCTCTgTAAAATGATCAACCTCTCCCAGTCTGACACCATCGATGAGAGAGTCATCAACACCAAGAAACACACCACCTTTACCATGACcgAGAACCTGATGCTGGCGATAAACTCTGCATTGTCTATCGGCTGTACCGTGGTCAACATCGACGCCCCTGACCTGATGGCTGGGAAACCCCACCTGGTGCTGGGCCTGCTTTGGCAGATTATCAAGATAGGACTGTTTGCTGACATAGAGATCAGCAGCAacgaagCTCTTATTAACCTGCTGTTTGAGGGGGAGGAGTTAGAGCACCTGATGTCATTGTCTCCTGAAGAACTGTTGCTACGCTGGGTCAACCATCACCTAGGCAACGCTGGGGCCCAACCAATCAGCAACTTCAGCCAAGACATCaagGATTCCAGGGCATATTTCACCCTGTTGGACCAGATCTCACCTAAAGGAGAGGACATAGACGAGATGGCCATCCACATCGATATGACCGGCATCAATgagcGTGACGACGAACGCAGGGCAGAGATGATGCTTCGCCAGGCAGCCCGTCTGGACTGCAGACAGTTTGTGTCTCCTATGGATGTGGTGTCTGGCAACAGCAAGCTGAACCTGGCCTTCGTAGCCAACCTCTTCAACACACACCCGGCCCTGAAGAGGACTAACAGCAACAACATAGACACAGCACTCATagaggGAGAATCCAGAGAGGAGAAAACATTCAGGAACTGGATGAACTCTCTGGGAGTTGCTCCCTATGTCAACCACCTCTACTGtgacCTGTGTGATGCGGTGGTGATTCTCCAGTTGTATGAGAAAGTCAACGTCCCTGTAGAGTGGAAAAAAGTCAACAGACCTCCATACTCTGCACTGGGCAGTAACATGaagaagttggaGAACTGTACCTATGCGGTGGAACTGGGTCGGAATAAAGCTCGATTCTCATTGGTGGGAATTGGAGGAGTGAATCTGAACGAGGGAAGTCCCATGCACACACTGGCTCTGGTCTGGCAGCTGATGAGGAGGTACACTCTCCAGGTGTTGTCTGATCTAGGAGATGGGGAGAAGATTGGAGACCAGATTATAATCAACTGGGTCAACACTCAGCTCAAAGAGGGAGGCAAGGACTCACAGATCAGCAGCTTCAAGgATAAGCTGATCAGTACTAGTCTCCCAGTGATAGACTTGTTAGACACCATCGCCCCCAAATCTATCAAAGAGGAGCTGGTGAAGAGAGGGGAGCTCAGCGATGCAGACAAGCTCAACAACGCCAAGTACGCTATCACGGTATCCAGGAAGATTGGAGCCCGTGTCTACGCTCTGCCTGATGACCTGGTCGAGGTGAAACCCAAGATGGTTCTGACTGTGTTCGCGTGCCTGATGGGGAGGGGCATGAAGAAAGCTGACGGCTGAACACACACGCACTCAGACACACTAACATACACTAACAGCCTGTCCCAATTGGCTCCTTACCCTttaccctcttcctgtctccTGCACATCTAGTCTGTGATTAGATCAGTGTATATAATCGGAGCACAGCTCATTGTTCATTAAACATTTCTTTCATACTGATAGAAAGCGAGCGGTTATGTGCCTAGTGTGCTCAAGGAGGCACTGATGGATCATTTTAATATCTCTAAATTATGTTAATGTATTAATTCATTCTGCGTAAAAGAAACAACAGAATAGAATTATAAATCTATGTAGAGGAGGGGACATGAGGGGAcattcaatcacacacacacgcacacacgcagacatacacacaccttACAGAATTAACAGTACAGACACACTACAGACCTGTAAATGGCGTGTTATTCTCTTGACTTAGTCAACTCAATCTACCCGAAGATAACAGACTGACATTTTGTTCATGCAAATTGTGTGCGTGTGGGAGGGGTGGTGCATTTTTGAATACTCAATCATAAACACATATAATAAAACCCATTTAAGAAA

Function

NR:

description
plastin-1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17275 PLS1; plastin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982720.1 False 2743 mRNA 0.49 17 15478409 15489245
XM_036982719.1 False 2740 mRNA 0.49 17 15478417 15489245
XM_036982721.1 True 2592 mRNA 0.48 16 15478423 15489245

Neighbor

gene id symbol gene type direction distance location
LOC110528896 LOC106595470 coding upstream 5527 15457306 ~ 15472882 (+)
LOC110528890 LOC106591034 coding upstream 39742 15428476 ~ 15438667 (+)
trnar-ccu-8 NA coding upstream 57483 15420854 ~ 15420926 (+)
trnar-ccu-7 NA coding upstream 114500 15363837 ~ 15363909 (+)
trnar-ccu-6 NA coding upstream 115313 15363024 ~ 15363096 (+)
LOC110528902 atr coding downstream 3625 15492870 ~ 15498827 (+)
LOC110528777 LOC106575448 coding downstream 10192 15499437 ~ 15505193 (+)
LOC110528898 LOC106574671 coding downstream 24620 15513865 ~ 15515686 (+)
stag1a LOC106575446 coding downstream 41357 15530602 ~ 15575474 (+)
ppp2r3a ppp2r3a coding downstream 116712 15605957 ~ 15647056 (+)
G578383 NA non-coding upstream 35832 15441415 ~ 15442577 (+)
G578344 NA non-coding upstream 59726 15417797 ~ 15418683 (+)
G578303 NA non-coding upstream 98381 15375703 ~ 15380028 (+)
G578297 NA non-coding upstream 123594 15353086 ~ 15354815 (+)
G578290 NA non-coding upstream 131818 15335982 ~ 15346591 (+)
G578398 NA non-coding downstream 18926 15508171 ~ 15508444 (+)
G578404 NA non-coding downstream 35020 15524265 ~ 15524815 (+)
G578423 NA non-coding downstream 77793 15567038 ~ 15568865 (+)
G578356 LOC106574468 non-coding downstream 89691 15578936 ~ 15582633 (+)
G578427 NA non-coding downstream 102144 15591389 ~ 15591597 (+)
G578389 NA other upstream 14044 15462245 ~ 15464365 (+)
G578031 NA other upstream 222202 15255171 ~ 15256207 (+)
G577909 NA other upstream 463874 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 506802 14961205 ~ 14971607 (+)
G577561 NA other upstream 1071811 14406096 ~ 14406598 (+)
LOC110528906 LOC106574480 other downstream 504413 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 557038 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 968800 16457220 ~ 16463699 (+)
G579566 NA other downstream 1329297 16818542 ~ 16819890 (+)

Expression


Co-expression Network