LOC110528777 (LOC106575448)


Basic Information

Item Value
gene id LOC110528777
gene name LOC106575448
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15499437 ~ 15505193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982723.1
acatgacatccaaattaaaatcaatttaaattacaggttgtaatgcaacaaaataagaacaacgccaagggggtgaatacttttgcaaggcactgtacatgaaccATTCACTCACACATGACAGAGGGAGTTTGACATTTTGCGGGACACCTAATCTTCTTCGCGTCATAGGGCGACAAATGTTCTTTGCAGCAGCCCATTGACGTCACCAAAACATCCTCTAAAGCCGCGAATAGAAAAACGAGCTGCTGGAGAGGTAAACAAGATTCCGCTGTCATTCATTCAAACAACGCGAGCTGATATGATGGATATTCTTAGCTCCTCTGTGTGGAAAATGTTATGACAGGATACATCACCGCTAGTCATACTCTGTCTTTCTAGAATGGTCGTTGTTTAAGGTCTCAGTTTTTCACATGCCAGTAATCCGGTTAGAAGAGATGTATTTTTATAGCTGTCCACGGCTGctagacaactagcctagctCGTTGCGCCGTAGGAGAGCGGCCGACCTTGACCAGATGGATATCACGAGGCTCGCTGTGGACGCGGGCGCGTTTATCAACCGAGCTGTTCAGTATACGGAGGAAGCTCTGGGACAGGCTGAGAAGACAGAGTTGGACAGCCGGTTGGGGAGTCTCCTGGACAGAGCAGAGTCCACTAAGACCTGGACTGACAAAATCATCTCACAGACTGAGACTTTATTGCAGCCTAACCCTGGATCTCGTTTAGAGGACTTGTTGTATAAGGGTCTGGATTGGAGCGCCCCTGAGAGGCCAACCCCCCACGAGCTGCTGAGTGAAAACATGATGGACGCTGCTCTGGAACTGGGGAGACACACACcctacggtagtaCTCTGATTAAGTGTGGGGAGTTGGAGAGGCAGATCGGGTTGGCGAACAAGAAGCTGATCCAGAGTACAGACATCAACTTCCTGTCTCCGCTACGGAGGTTTACTGACCAGGAATACACAGtcatacagaatgagCGCAGGCAGCTGGTGAATAAGCGGTTAGATCTGGACATTGCAAAGGCCAGACTGAGAAAGGCACAGGAAGCAGACATCGAGGCCCGGggtctAAATGCTAACCCATTAGGAGAGGAGTATGTAGCTCATGTCTCCTACATGTTCAGCTTCCTACGAGTCAGATGGCTGAAGATGTGGGCCCAGGAAGTCTCTCAGGCAGAGATGGAGCTGAGgatctctcagtgtgtgtttgaccgacagtcagagatcaccagaCTACTGCTGGAGGGAATCAACACTACACATGCTGCCCATTTGAGAAGCCTGTCTGACTTTGTAGAAGCCCAGGGTAGCTACTACGCTCAGTGTTACCAGCTCACACAGGACCTACACACCCAACTGGCctgCGCTCCCCCTTTGATCTGCTACAATAACAACTGGCACTTAGAAACTAACCAACCCTCAACAGGTAACCTGCCCTTACCAACCATTCAGCCCCTAGCAACCAGTGACTCTGCAACAACCAACCAGGCAACTAGCCAACCCTTAACAACCACCCAGCCCTTAGCAACATGTGAGTCTTCGACAACCATCCAGGCAACTAGCCAACCCCTATCAACCAACCAGGCAAACAGCCAACCCTTAGCAACCAACCAGACAGCCAATGAGTCCTCAAAAACCAACAAGTCCTCGACAACCAATAAGTCCTTGACAAACAACCAGACAAGCAGACAACTCTTAGCAACCACTGGATTCTCTACAACCAACCAGGCTTTGTCAATCATCCAGACAAACAGCCAAGCCCTACAAACCAACCAGGCAACCAGCCAAGCCCTACAAACCAACCAGGCAACCAGCCAACCCCTACAAACCAACCAGGCAACCAGCCAACCCCTACAAACCAACCAGGCAATCCGCCAACCCCTACAAACCAACCAAGCAACCAGCCAACCCCTACAAACCAACCAGGCAACCAGCCAACCCCTACAAACCAACCAGGCAACCAGCCAACCCCTACAAACCAACCTGGCAACCAGCCAACCTCTGCAAACCAACCAGGCAACCAGCCAACCTCTAGGAACCAACCAGGCAACCAGCCAACCTCTACAAACCAACCAGGAAACCAGACAACCCCTACAAACCAACCCGCCAACCAGCCAACCTCTAGGAACCAACCAGGCAACCAGCCAACCCCAACAAACCAACCAGGCAACAAGCCAACCCCTACAAACCAACCAGGCAACCAACCAACCTCTAGGAACCAACCAGGCAACCAGCCAACCTCTACAAACCAACCAGGCAACCAGACAACCCCTACAAACCAACCTGGCAACCAGCCAACCTCTaggaaccaaccaaccaaccctgaCAAACCAACCAGGCAACCAGCCAACCCCTACAAACCAACCAGGCAACCAGCCAACCTCTAGGAACCAACCAGGCAACCAGCCAACCTCTAGGAACCAACCAGGCAACCAGCCAACCTCTACAAACCAACCAGGCAACCAGACAACCCCTACAAACCAACCCGGCAACCAGCCAACCTCTAGGAACCAACCAGGCAACCAGCCAATCCCTACAAACCATCCAGGCAACCAATGAGTCCCCAACAACCAATGTGTTCTCAACAACTAATGAGTCCTCGATCACCAACCAGGTAACTAACCAGCCCTCGACATCCAATCAGGTAACCAACCAATCTCTAGCAACCTACCGGACAAACAGCCAGCCCTTAGCAACCAATGAGTCGTCAACAAACAACAAGAACTCGACAAACAACCAGGCAACCAGCCAACCCTTGAAAACCAAACAGGCAACCAGACAACCCCTACAAACCAACCAGGCAACCAATGAGTCCCCAACAACCAATGTGTCCTCATCAACCAACCAGGCAACAAACCAACCCTTGAAAACCAACCAGGAACTCATCGAACCCTTAGCAACCAATGAGTCATCAACCACCAACCAACCCATACAAACCAACCAGACAGCCCTTGACAAGCAACCAGGAAACTGGTGCacttatgtggctatattgaagcaacatctcaagacatcagtcaggatgttaaagcttggtcgcaaatggttcttccaaatggacaatgaccccaagcatacatccaaagttgtagcaaaatggctt
>XM_036982725.1
atgacatccaaattaaaatcaatttaaattacaggttgtaatgcaacaaaataagaacaacgccaagggggtgaatacttttgcaaggcactgtacatgaaccATTCACTCACACATGACAGAGGGAGTTTGACATTTTGCGGGACACCTAATCTTCTTCGCGTCATAGGGCGACAAATGTTCTTTGCAGCAGCCCATTGACGTCACCAAAACATCCTCTAAAGCCGCGAATAGAAAAACGAGCTGCTGGAGAGGTAAACAAGATTCCGCTGTCATTCATTCAAACAACGCGAGCTGATATGATGGATATTCTTAGCTCCTCTGTGTGGAAAATGTTATGACAGGATACATCACCGCTAGTCATACTCTGTCTTTCTAGAATGGTCGTTGTTTAAGGTCTCAGTTTTTCACATGCCAGTAATCCGGTTAGAAGAGATGTATTTTTATAGCTGTCCACGGCTGctagacaactagcctagctCGTTGCGCCGTAGGAGAGCGGCCGACCTTGACCAGATGGATATCACGAGGCTCGCTGTGGACGCGGGCGCGTTTATCAACCGAGCTGTTCAGTATACGGAGGAAGCTCTGGGACAGGCTGAGAAGACAGAGTTGGACAGCCGGTTGGGGAGTCTCCTGGACAGAGCAGAGTCCACTAAGACCTGGACTGACAAAATCATCTCACAGACTGAGACTTTATTGCAGCCTAACCCTGGATCTCGTTTAGAGGACTTGTTGTATAAGGGTCTGGATTGGAGCGCCCCTGAGAGGCCAACCCCCCACGAGCTGCTGAGTGAAAACATGATGGACGCTGCTCTGGAACTGGGGAGACACACACcctacggtagtaCTCTGATTAAGTGTGGGGAGTTGGAGAGGCAGATCGGGTTGGCGAACAAGAAGCTGATCCAGAGTACAGACATCAACTTCCTGTCTCCGCTACGGAGGTTTACTGACCAGGAATACACAGtcatacagaatgagCGCAGGCAGCTGGTGAATAAGCGGTTAGATCTGGACATTGCAAAGGCCAGACTGAGAAAGGCACAGGAAGCAGACATCGAGGCCCGGggtctAAATGCTAACCCATTAGGAGAGGAGTATGTAGCTCATGTCTCCTACATGTTCAGCTTCCTACGAGTCAGATGGCTGAAGATGTGGGCCCAGGAAGTCTCTCAGGCAGAGATGGAGCTGAGgatctctcagtgtgtgtttgaccgacagtcagagatcaccagaCTACTGCTGGAGGGAATCAACACTACACATGCTGCCCATTTGAGAAGCCTGTCTGACTTTGTAGAAGCCCAGGCGCTCCCCCTTTGATCTGCTACAATAACAACTGGCACTTAGAAACTAACCAACCCTCAACAGGTAACCTGCCCTTACCAACCATTCAGCCCCTAGCAACCAGTGACTCTGCAACAACCAACCAGGCAACTAGCCAACCCTTAACAACCACCCAGCCCT
>XM_036982724.1
atgacatccaaattaaaatcaatttaaattacaggttgtaatgcaacaaaataagaacaacgccaagggggtgaatacttttgcaaggcactgtacatgaaccATTCACTCACACATGACAGAGGGAGTTTGACATTTTGCGGGACACCTAATCTTCTTCGCGTCATAGGGCGACAAATGTTCTTTGCAGCAGCCCATTGACGTCACCAAAACATCCTCTAAAGCCGCGAATAGAAAAACGAGCTGCTGGAGAGGTAAACAAGATTCCGCTGTCATTCATTCAAACAACGCGAGCTGATATGATGGATATTCTTAGCTCCTCTGTGTGGAAAATGTTATGACAGGATACATCACCGCTAGTCATACTCTGTCTTTCTAGAATGGTCGTTGTTTAAGGTCTCAGTTTTTCACATGCCAGTAATCCGGTTAGAAGAGATGTATTTTTATAGCTGTCCACGGCTGctagacaactagcctagctCGTTGCGCCGTAGGAGAGCGGCCGACCTTGACCAGATGGATATCACGAGGCTCGCTGTGGACGCGGGCGCGTTTATCAACCGAGCTGTTCAGTATACGGAGGAAGCTCTGGGACAGGCTGAGAAGACAGAGTTGGACAGCCGGTTGGGGAGTCTCCTGGACAGAGCAGAGTCCACTAAGACCTGGACTGACAAAATCATCTCACAGACTGAGACTTTATTGCAGCCTAACCCTGGATCTCGTTTAGAGGACTTGTTGTATAAGGGTCTGGATTGGAGCGCCCCTGAGAGGCCAACCCCCCACGAGCTGCTGAGTGAAAACATGATGGACGCTGCTCTGGAACTGGGGAGACACACACcctacggtagtaCTCTGATTAAGTGTGGGGAGTTGGAGAGGCAGATCGGGTTGGCGAACAAGAAGCTGATCCAGAGTACAGACATCAACTTCCTGTCTCCGCTACGGAGGTTTACTGACCAGGAATACACAGtcatacagaatgagCGCAGGCAGCTGGTGAATAAGCGGTTAGATCTGGACATTGCAAAGGCCAGACTGAGAAAGGCACAGGAAGCAGACATCGAGGCCCGGggtctAAATGCTAACCCATTAGGAGAGGAGTATGTAGCTCATGTCTCCTACATGTTCAGCTTCCTACGAGTCAGATGGCTGAAGATGTGGGCCCAGGAAGTCTCTCAGGCAGAGATGGAGCTGAGgatctctcagtgtgtgtttgaccgacagtcagagatcaccagaCTACTGCTGGAGGGAATCAACACTACACATGCTGCCCATTTGAGAAGCCTGTCTGACTTTGTAGAAGCCCAGGGTAGCTACTACGCTCAGTGTTACCAGCTCACACAGGACCTACACACCCAACTGGCctgGTAACCTGCCCTTACCAACCATTCAGCCCCTAGCAACCAGTGACTCTGCAACAACCAACCAGGCAACTAGCCAACCCTTAACAACCACCCAGCCCTTAGCAACATGTGAGTCT

Function

NR:

description
mucin-17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982723.1 False 3111 mRNA 0.50 10 15499437 15505193
XM_036982725.1 False 1470 mRNA 0.49 9 15499439 15503531
XM_036982724.1 True 1483 mRNA 0.49 9 15499439 15503548

Neighbor

gene id symbol gene type direction distance location
LOC110528902 atr coding upstream 610 15492870 ~ 15498827 (+)
LOC110528871 LOC105019803 coding upstream 10192 15478409 ~ 15489245 (+)
LOC110528896 LOC106595470 coding upstream 26555 15457306 ~ 15472882 (+)
LOC110528890 LOC106591034 coding upstream 60770 15428476 ~ 15438667 (+)
trnar-ccu-8 NA coding upstream 78511 15420854 ~ 15420926 (+)
LOC110528898 LOC106574671 coding downstream 8672 15513865 ~ 15515686 (+)
stag1a LOC106575446 coding downstream 25409 15530602 ~ 15575474 (+)
ppp2r3a ppp2r3a coding downstream 100764 15605957 ~ 15647056 (+)
fndc3ba LOC105019796 coding downstream 144353 15649546 ~ 15814242 (+)
LOC110495697 LOC106574566 coding downstream 326617 15831810 ~ 15868293 (+)
G578383 NA non-coding upstream 56860 15441415 ~ 15442577 (+)
G578344 NA non-coding upstream 80754 15417797 ~ 15418683 (+)
G578303 NA non-coding upstream 119409 15375703 ~ 15380028 (+)
G578297 NA non-coding upstream 144622 15353086 ~ 15354815 (+)
G578290 NA non-coding upstream 152846 15335982 ~ 15346591 (+)
G578398 NA non-coding downstream 2978 15508171 ~ 15508444 (+)
G578404 NA non-coding downstream 19072 15524265 ~ 15524815 (+)
G578423 NA non-coding downstream 61845 15567038 ~ 15568865 (+)
G578356 LOC106574468 non-coding downstream 73743 15578936 ~ 15582633 (+)
G578427 NA non-coding downstream 86196 15591389 ~ 15591597 (+)
G578389 NA other upstream 35072 15462245 ~ 15464365 (+)
G578031 NA other upstream 243230 15255171 ~ 15256207 (+)
G577909 NA other upstream 484902 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 527830 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 488465 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 541090 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 952852 16457220 ~ 16463699 (+)
G579566 NA other downstream 1313349 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1537216 17042409 ~ 17097924 (+)

Expression


Co-expression Network