LOC110528898 (LOC106574671)


Basic Information

Item Value
gene id LOC110528898
gene name LOC106574671
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15513865 ~ 15515686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611079.2
ctctctctctctctctctctatgctgtaAAAGTGCCACAAGTGGCACCACTCCACCCTGCAGATTGCCCCTCCCTCACAGTACAGGTGGTTACATGGTGGTGTAACATGCACCCTCCACAGAAGCATTACTCACACACCCTCCCCCACTTtatcccccttttctctcctccctctctcctccccttctcctggTGTATAACAGTCAGCCCAGACAATTGTGGGCTCAGTCTagtcaactagagagagagagagagagagagagaatacagcaCAAGACCTCTGGAGTATCACTGGCAACAGGACGTTTTTTTCTGGAACAGTTTTcttttacatacatacacactcccATTCACACTttcttccacacacacagactcggAAGCGGCAGCATGTTGGTGAACAGGGTCTGGCATGTGGTGTGtgtgctctgctgtgtgtgtgtgaacgcagAGGAATATGAAGTGAACTACGCAGACAACTACGAAAACGAGATTACACAGGACCAACAGGACGGGGACTCCCCTGTGACTACCTGCCAGGCTACAGACCTCTCTCGCTGGAACAAACTCTTTGTGGCTCTGGAGGACTCCCACCAGAGGGATATGATGCTGATGGAAGCCCTGGAGCAACGCTGTGGAGCCCCGGGAGTCTGCCAGCAGTGCCTGCCCGCCATCGAGGCAGTTTGCCGGGGGCAGACAGAGCAGGCGAGCCCCAGGCTCCATCAAGGCCTAGTGGAGCTGAAGGAGGAGGTAACAGAGCGAGAGGGGAGGATTAATTCTTCACTACAGCAGATCAAACAGGAGGGAGCAGAAAGTTATGGGAGGATGATGGCTGTGTTACATCATCTCCTTCAGAACAGCAAAGAGCAGAACCATAGACTACATCGATTGGAGGAGAGTAAGCTGACAGGGGAGGTGACAGAAGGGGCTGGATCTATAGGAGCCGGGCATAGAGAAGCAGAGCCAATCAGGACAGGGCATAAAGAGAATAGGTTGGGTTTGGGGGAGGGGCTTAGTGGGAGAGGTGGACCAATAGGGACGAAGCCTGGCAGTATAGGGGCGGGTCTCGGACTGGGTTTGGGCATGAAGCTGTTCTCGTCAAGCACAAAGAAACAGTTAGTGACATCATCGCCATCATCGGACCCGGGAAAGATTGAGCGGCCTCTGGTTGCTATAGCGATGGAAATGCAGAAGGTGCAGACCCAGCTGGACCTAATATCCTCTGTAGGGAACTAAGGATGAAAAAATACAAGGAGAAATTAAAGGAAGGATATCTGATGGATATTGTCCTCTATCAGGGACTGAATCAAAACTAAAATCTAAActtattgaaatgttccacaCTAACATATCACCTCTTTATACATTAGGAAAGCAAAACAATCGCCTTGAAATATGTTTAGTATTCTTTTTTAATTCTGTATAATTAAAGGAAATGCTCTGTGACTCTAATTGTCTAAGTGATGAATAAAGATTTGTTAAACTTTTTAATTGGTGGAAAGGGTTCCTCCTGTCTCAAGTTATACACCCACCATCTTTACCAGGGAAACTTGTCATCATGGACATTGTGGACAATAACAGGAGTGTCTCAGATACTGTTGACATCTCAGCTATAATCAGACACAGTTCTCTTTCTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611079.2 True 1638 mRNA 0.48 2 15513865 15515686

Neighbor

gene id symbol gene type direction distance location
LOC110528777 LOC106575448 coding upstream 8672 15499437 ~ 15505193 (+)
LOC110528902 atr coding upstream 15038 15492870 ~ 15498827 (+)
LOC110528871 LOC105019803 coding upstream 24620 15478409 ~ 15489245 (+)
LOC110528896 LOC106595470 coding upstream 40983 15457306 ~ 15472882 (+)
LOC110528890 LOC106591034 coding upstream 75198 15428476 ~ 15438667 (+)
stag1a LOC106575446 coding downstream 14916 15530602 ~ 15575474 (+)
ppp2r3a ppp2r3a coding downstream 90271 15605957 ~ 15647056 (+)
fndc3ba LOC105019796 coding downstream 133860 15649546 ~ 15814242 (+)
LOC110495697 LOC106574566 coding downstream 316124 15831810 ~ 15868293 (+)
LOC110495702 LOC106574475 coding downstream 357460 15873146 ~ 15883313 (+)
G578398 NA non-coding upstream 5421 15508171 ~ 15508444 (+)
G578383 NA non-coding upstream 71288 15441415 ~ 15442577 (+)
G578344 NA non-coding upstream 95182 15417797 ~ 15418683 (+)
G578303 NA non-coding upstream 133837 15375703 ~ 15380028 (+)
G578297 NA non-coding upstream 159050 15353086 ~ 15354815 (+)
G578404 NA non-coding downstream 8579 15524265 ~ 15524815 (+)
G578423 NA non-coding downstream 51352 15567038 ~ 15568865 (+)
G578356 LOC106574468 non-coding downstream 63250 15578936 ~ 15582633 (+)
G578427 NA non-coding downstream 75703 15591389 ~ 15591597 (+)
G578429 NA non-coding downstream 82388 15598074 ~ 15598341 (+)
G578389 NA other upstream 49500 15462245 ~ 15464365 (+)
G578031 NA other upstream 257658 15255171 ~ 15256207 (+)
G577909 NA other upstream 499330 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 542258 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 477972 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 530597 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 942359 16457220 ~ 16463699 (+)
G579566 NA other downstream 1302856 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1526723 17042409 ~ 17097924 (+)

Expression


Co-expression Network