stag1a (LOC106575446)


Basic Information

Item Value
gene id stag1a
gene name LOC106575446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15530602 ~ 15575474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982728.1
AGTAAGGTTGCAGTGAGAGGCTGCGCCACCAGAACAGCATTACAGCGAGGAAGGCTCCACCAGATGGCAGTTTAGGATTGTTCCTTTCTGCTCCAAGGCGCGGTTCCCGCTTCTCACGACatatttacaatattaaaatCGACACACTTTTATCAGATATATCGATTTTTTATTTCGGAAGACAGTAATCGATTGGTCGATGGCCGGTAAAGgggcTGGTGTGTTGTGAGAGCTGTGTCTCCAGTGTTGAGTGAATTTGGTCACCCCTCTGTAACCCCCACCACACACGCGCACGGctgactcaccccccccccccaccctcccccccGCCCTCCAGCggaccacacacacccaccctttcctgaggacacacacccctccctccagcggaccacacacacccactctttcctgaggacacacacccctcccctgcaGCAGTCAGGATGATCACCTCTGAGCTGCCTGTCCTACAggacTCGTCCAATGAGAGCGGAGCGGCAGACACAGTGAgtctgagtgtgagtgtgagtgagctGGAGGACCCGACAGACACTAAAGgcaagaagaagagagggaggcctgGCAGACCACCAGCAGCCAATAAGAAGCCTCGGAAGTCCCCAGCGGAGAAGGCTACAGGCGGGGCTAAAGGGAGGAAGGCCAATGGGGTCCCTCAGACCAACGGCGAGGGAGGAGACCCCGTCACTCTGTTTGAGGTGGTCAGAATGGGAAAGAGTGCCATGCAGTCTGTGGTTGATGACTGGATCGAGTCGTACAAGCAGGACAGAGACATCGCCTTACTGGACCTCATCAACTTCTTTATCCAGTGTTCTGGCTGCAAAGGCACGGTGCGCATCGAGATGTTCCGGAACATGCAGAACGCGGAGATCATCAGGAAGATGACAGAGGAGTTTGACGAGGACAGTGGGGACTACCCTCTCACCATGCCCGGGCCGCTGTGGAAGAAGTTCCGCTACAACTTCTGTGAGTTCATCTGCGTATTGATACGTCAGTGCCAGTACAGCATCATCTACGATGAGTACCTCATGGACACGGTCATATCCCTCCTCACGGGACTATCTGACTCACAGGTCAGAGCTTTCAGACACACCAGCACACTGGCAGCGATGAAGTTGATGACAGCGTTGGTGAACGTGGCGTTGAACCTCAGTATCCACCAGGACAACACCCAGAGACAGTATGAGGCTGAGAGGAACAAGATGGCCGGAAAACGAGCCAATGAGAAGCTAGAGCTGCTGCTGCAGAAGAGGAAGGAGCTCCAGGAGAACCAGGATGAGATTGAGAACATGATGAACTCCATCTTCAAAGGCATCTTTGTCCACcgctacagGGATGCTATAGCTGAGATCAGAGCTATCTGTATTGAGGAGATTGGAGTTTGGATGAAGATGTACTCTGACGCCTTCCTCAACGACAGCTACCTGAAATATGTAGGATGGACCTTACACGACCGGCAAGGTGAGGTCCGTCTGAAGTGTCTGAAGGCTCTCCAGAACCTGTACACCAACAGAGAACTGTTTCCTAAACTGGAGCTGTTCACCAACCGCTTCAAGGACCGCATCGTGTCCATGACTCTGGATAAGGAGTATGACGTGGCTGTGGAGGCTATTAGACTGATCACTCTCATCCTGCAGGGCAGCGAGGATGCGTTGTCCAATGAGGACTGCGAGAATGTCTACCACCTGGTTTACTCCGCCCACAGACCTGTCGCCGTGGCAGCAGGAGAGTTCCTGCACAGGAAGTTGTTCAGCAGACATGACCCCCAGGCAGAGGAGGAGTTGgctaagaggagagggaggagcagcCCCAACGGGAACCTCCTCCGCATGCTGGTGCTGTTCTTCTTGGAGAGTGAGCTTCATGAACATGCAGCCTATCTGGTGGACTCTCTGTGGGAGAGTTCTCAGGAGCTGCTGAAGGACTGGGAGTGTATGACTGAGTTACTGCTGGAGGAGCCTGTacaaggagaggaggTgctgtcagacagacaggagagttCCCTGATAGAGTTGATGGTGTGTACCATCCGGCAGGCAGCAGAGGCTCACCCACCCGTCGGCAGGGGCACTGGGAAGCGTGTTCTCACAGCGAAGGAGAGGAAGACTCAGATAGACGACAAGAACAAACTGACAGAACACTTCATCATGGCCCTGCCCATGCTCCTGTCTAAGTACCAGGCCGACTCTGAGAAGGTGGCTAACCTGCTACAGATCCCTATGTTCTTTGATCTGGACGTGTACAGCGCTGGGCGTATGGAGaagcACCTAGATGCCTTACTGAAGCAGATCCGCCTGGTGGTGGAGAAACACATTGAGACAGACGTGCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGTTCTGAGGAGTACACCATCATGAACAGAGTGGACATCGCCCGCTCGCAACTCATCGACGAGATAACGGACCGCTTCACACACTCCGTAGAAGACCTGCTGCAAGAGGCCGAGGAGGCCGACGATGACGACATCTACAACGTTCTGTCTACCCTCAAGAGACTCACGGCCTTCCACAAtgCTCATGACCTGACGCGGTGGGACCTGTTTGGTAGCTGCTacaggttgttgaaggctggTATTGAGCAGGGGGCCATGCCAGAGCAGATCGCtgtccaggccctgcagtgttcCCACTACTCCATACTGTGGCAGCTGGTGAAAATCACAGAGGGAACTCCTAGTAAGGAGGACCTGGTGGCTCTGAGGAGAGTGGTGAAGTCCTTCCTGGCTGTCTGTCAGCAGTGTCTGTCCAATGTCAACACACCTGTGAAAGAACAGGCCTTCATGTTGTTGTGTGACCTGCTGATGGTCTTCAGTCACCAGTTGGTGTCTGGGGGCAGAGAAGGACTGGAGGCCCTGGTGTTCAACCCAGACAGCACCTTACAGAACGAGCTGCTCACCTTCATCCTGGACCACGTCTTTATAGACCAGGACGATGAGAACCAGAGCATGGAAGGCGACGAGGAGGATGAAGCCAATAAGATAGAAGCCCTTCACAAGAGGAGAAACCTGCTCGCAGCCTTCAGCAAACTCATCATCTATGACATCGTGGACATGCCTGCTGCTGCAGACATCTTCAAACACTACATGAAGtaTTATAATGACTATGGTGATATCATCAAGGAGACTCTCAGTAAGACCAGACAGAGTGATAAGATCCTCTGTGCCAAAACCCTCATCCTCAGTCTGCAACAGCTGTTCAACGAGcttctccaggaccagggtcCTACTCTGGACAGAACATCGTCTCACGTCAGCGGCATCAAGGAGTTGGCCCGGCGCTTCGCCCTCACCTTCGGCCTGGACCAGATCAAAACCAGAGAGGCTGTCGCTACGCTGCACAaAGATGGTATAGAGTTTGCCTTTAAGTACCAGAACCCCCATGGTGCAGAGTTCCCTCCTCCTAACCTGGCCTTCCTAGAGGTCCTCTCAGAGTTCTCCTCCAAACTGCTGCGACAGGACAAGAAGACTGTtcaCTCGTATCTGGAGAAGTTTATGTCGGAGTCGATGTCGGAGCGTCGTGAGGACGTGTGGCTGCCCTTAATCTCCTACCGGAACAGTCTGCtaacaggaggagaggatggggaccGGATGTCGGTAACGTCAGGCGCCAGCAGCAAGACCAGCTCCATCCGCAGCAAGAAGGGACGGACGCCAATACACAAGAGTAAACGCATCGAGGAGGAGAGTAGTGTGGAGGCCTCCTGGCTTCGTGGTAATGACAACCTCCAGACACCGGGGGCGCTAACCACCCCTCAGCTCACCTCCACCGTCCTCAGAGAAAACCCACGGCAGGCGGCGGACACACACCTACCTGACCACGACTCTGAACCTGGCTCAGAGAACGACTATGTACacaaTCCCCAGATGCAGATGTCTTGGCTAGGCCAACAGAAGATGGAGGACAGCAGGAAGGATAGAACAGCCATGAACTACATGAAGGCCCGCAACCAGACTGTCAGACAAACTGTtcgtggtctGATGGAGGATGACGCAGAGCCAATCTTTGAGGACGTCATGATGTCATCGCGAGGTCAACTGGAGGACATGAACGAGGAGTTCGAAGACACCATGGTCATCGACCTGCCTCCCTCCAGGAACAGGCGTGAGAGGGCGGAGCTCAGACCAGACTTCTTCGACTCAGCAGCCATGATCGAGGACGAGTCGggtttcaccatgccCATGTTCTGATCCAGT
>XM_036982727.1
ATGATCACCTCTGAGCTGCCTGTCCTACAggacTCGTCCAATGAGAGCGGAGCGGCAGACACAGTGAgtctgagtgtgagtgtgagtgagctGGAGGACCCGACAGACACTAAAGgcaagaagaagagagggaggcctgGCAGACCACCAGCAGCCAATAAGAAGCCTCGGAAGTCCCCAGCGGAGAAGGCTACAGGCGGGGCTAAAGGGAGGAAGGCCAATGGGGTCCCTCAGACCAACGGCGAGGGAGGAGACCCCGTCACTCTGTTTGAGGTGGTCAGAATGGGAAAGAGTGCCATGCAGTCTGTGGTTGATGACTGGATCGAGTCGTACAAGCAGGACAGAGACATCGCCTTACTGGACCTCATCAACTTCTTTATCCAGTGTTCTGGCTGCAAAGGCACGGTGCGCATCGAGATGTTCCGGAACATGCAGAACGCGGAGATCATCAGGAAGATGACAGAGGAGTTTGACGAGGACAGTGGGGACTACCCTCTCACCATGCCCGGGCCGCTGTGGAAGAAGTTCCGCTACAACTTCTGTGAGTTCATCTGCGTATTGATACGTCAGTGCCAGTACAGCATCATCTACGATGAGTACCTCATGGACACGGTCATATCCCTCCTCACGGGACTATCTGACTCACAGGTCAGAGCTTTCAGACACACCAGCACACTGGCAGCGATGAAGTTGATGACAGCGTTGGTGAACGTGGCGTTGAACCTCAGTATCCACCAGGACAACACCCAGAGACAGTATGAGGCTGAGAGGAACAAGATGGCCGGAAAACGAGCCAATGAGAAGCTAGAGCTGCTGCTGCAGAAGAGGAAGGAGCTCCAGGAGAACCAGGATGAGATTGAGAACATGATGAACTCCATCTTCAAAGGCATCTTTGTCCACcgctacagGGATGCTATAGCTGAGATCAGAGCTATCTGTATTGAGGAGATTGGAGTTTGGATGAAGATGTACTCTGACGCCTTCCTCAACGACAGCTACCTGAAATATGTAGGATGGACCTTACACGACCGGCAAGGTGAGGTCCGTCTGAAGTGTCTGAAGGCTCTCCAGAACCTGTACACCAACAGAGAACTGTTTCCTAAACTGGAGCTGTTCACCAACCGCTTCAAGGACCGCATCGTGTCCATGACTCTGGATAAGGAGTATGACGTGGCTGTGGAGGCTATTAGACTGATCACTCTCATCCTGCAGGGCAGCGAGGATGCGTTGTCCAATGAGGACTGCGAGAATGTCTACCACCTGGTTTACTCCGCCCACAGACCTGTCGCCGTGGCAGCAGGAGAGTTCCTGCACAGGAAGTTGTTCAGCAGACATGACCCCCAGGCAGAGGAGGAGTTGgctaagaggagagggaggagcagcCCCAACGGGAACCTCCTCCGCATGCTGGTGCTGTTCTTCTTGGAGAGTGAGCTTCATGAACATGCAGCCTATCTGGTGGACTCTCTGTGGGAGAGTTCTCAGGAGCTGCTGAAGGACTGGGAGTGTATGACTGAGTTACTGCTGGAGGAGCCTGTacaaggagaggaggTgctgtcagacagacaggagagttCCCTGATAGAGTTGATGGTGTGTACCATCCGGCAGGCAGCAGAGGCTCACCCACCCGTCGGCAGGGGCACTGGGAAGCGTGTTCTCACAGCGAAGGAGAGGAAGACTCAGATAGACGACAAGAACAAACTGACAGAACACTTCATCATGGCCCTGCCCATGCTCCTGTCTAAGTACCAGGCCGACTCTGAGAAGGTGGCTAACCTGCTACAGATCCCTATGTTCTTTGATCTGGACGTGTACAGCGCTGGGCGTATGGAGaagcACCTAGATGCCTTACTGAAGCAGATCCGCCTGGTGGTGGAGAAACACATTGAGACAGACGTGCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGTTCTGAGGAGTACACCATCATGAACAGAGTGGACATCGCCCGCTCGCAACTCATCGACGAGATAACGGACCGCTTCACACACTCCGTAGAAGACCTGCTGCAAGAGGCCGAGGAGGCCGACGATGACGACATCTACAACGTTCTGTCTACCCTCAAGAGACTCACGGCCTTCCACAAtgCTCATGACCTGACGCGGTGGGACCTGTTTGGTAGCTGCTacaggttgttgaaggctggTATTGAGCAGGGGGCCATGCCAGAGCAGATCGCtgtccaggccctgcagtgttcCCACTACTCCATACTGTGGCAGCTGGTGAAAATCACAGAGGGAACTCCTAGTAAGGAGGACCTGGTGGCTCTGAGGAGAGTGGTGAAGTCCTTCCTGGCTGTCTGTCAGCAGTGTCTGTCCAATGTCAACACACCTGTGAAAGAACAGGCCTTCATGTTGTTGTGTGACCTGCTGATGGTCTTCAGTCACCAGTTGGTGTCTGGGGGCAGAGAAGGACTGGAGGCCCTGGTGTTCAACCCAGACAGCACCTTACAGAACGAGCTGCTCACCTTCATCCTGGACCACGTCTTTATAGACCAGGACGATGAGAACCAGAGCATGGAAGGCGACGAGGAGGATGAAGCCAATAAGATAGAAGCCCTTCACAAGAGGAGAAACCTGCTCGCAGCCTTCAGCAAACTCATCATCTATGACATCGTGGACATGCCTGCTGCTGCAGACATCTTCAAACACTACATGAAGtaTTATAATGACTATGGTGATATCATCAAGGAGACTCTCAGTAAGACCAGACAGAGTGATAAGATCCTCTGTGCCAAAACCCTCATCCTCAGTCTGCAACAGCTGTTCAACGAGcttctccaggaccagggtcCTACTCTGGACAGAACATCGTCTCACGTCAGCGGCATCAAGGAGTTGGCCCGGCGCTTCGCCCTCACCTTCGGCCTGGACCAGATCAAAACCAGAGAGGCTGTCGCTACGCTGCACAaAGATGGTATAGAGTTTGCCTTTAAGTACCAGAACCCCCATGGTGCAGAGTTCCCTCCTCCTAACCTGGCCTTCCTAGAGGTCCTCTCAGAGTTCTCCTCCAAACTGCTGCGACAGGACAAGAAGACTGTtcaCTCGTATCTGGAGAAGTTTATGTCGGAGTCGATGTCGGAGCGTCGTGAGGACGTGTGGCTGCCCTTAATCTCCTACCGGAACAGTCTGCtaacaggaggagaggatggggaccGGATGTCGGTAACGTCAGGCGCCAGCAGCAAGACCAGCTCCATCCGCAGCAAGAAGGGACGGACGCCAATACACAAGAGTAAACGCATCGAGGAGGAGAGTAGTGTGGAGGCCTCCTGGCTTCGTGGTAATGACAACCTCCAGACACCGGGGGCGCTAACCACCCCTCAGCTCACCTCCACCGTCCTCAGAGAAAACCCACGGCAGGCGGCGGACACACACCTACCTGACCACGACTCTGAACCTGGCTCAGAGAACGACTATGTACacaaTCCCCAGATGCAGATGTCTTGGCTAGGCCAACAGAAGATGGAGGACAGCAGGAAGGATAGAACAGCCATGAACTACATGAAGGCCCGCAACCAGACTGTCAGACAAACTGTtcgtggtctGATGGAGGATGACGCAGAGCCAATCTTTGAGGACGTCATGATGTCATCGCGAGGTCAACTGGAGGACATGAACGAGGAGTTCGAAGACACCATGGTCATCGACCTGCCTCCCTCCAGGAACAGGCGTGAGAGGGCGGAGCTCAGACCAGACTTCTTCGACTCAGCAGCCATGATCGAGGACGAGTCGggtttcaccatgccCATGTTCTGATCCAGTGTTCCCAGTCCTTCCTGAAAGGGAGAGGGGCCTTCGACATGATGAGCTGTCAAACATCAGACTGTCTGTCAGAACTTTTATCACACACACTCGAACTCTGATCAGCCAGTTgacagctttgtgtgtgtgtgtggagtggatCCCTTCCAGAGAACCACTCACTGGCCGGCCGAAAGATCCCGCTCAACCCTGAGAATTTCGGACAGAGTATCTATCGTACATAGAGAAGATCTTTTATCATTCAGTGGACGTGTGGGTGTGTTGGCTACAAACCGGACAGAATATCAGACAAAATATCTATCGTACATAGAGAAGATCTTTTATCGTTCAGTGGACGTGTGGGTGTGTTGGCTACAAACCGGACAGAATATCAGACAAACTATCGTACAAAACATTGTTcaacatttctttaaaaataTTGTAAACTTTGGCCCTCCTTGTTTGTTCCCACTGACTTGTTTTAACTTCCTGTTATTGTTAGCGTTTTGGCTAATCTCTCCACTAGCTCTGTGGTTCTCGTGGCCCTGTGCGCCCGGCTATACAGTCCCCCATGCCACAGAGTTGTATGGTTGTTTCGTTCCACTTCCGACGTCATGTATAGTCCTCCCACCCCCCCAGATGGAACTTGATATTAAATGTGATAATTCTTTACTCTTTCATTTCTTTACTCTCTCACTCCTGTCTCGTCCCTCTttactctctcttcccctttgaTAGTGTTGAGAATATCCTTTATTTAGTTTTATTGGCAAATGCACCAAACAGCAACCAATGGGACAGAACTAGAAGAGTTCTCATTGGCCATACAAGAGGCTGTGACGTCATAGCCAAATCCCAAGCCCCTCCCCCCTCAgctccagacagacacacccacGGTTGAATCGCAGCTTTTTAAAAacgttttaaaaataaatatattttgaatttcaGTAGCTTTAGTACAAAGTTTTAAATCAAGTGAGTTTTGTGTTCTGATATTTGTACAGTTATCTTTCTGAAAAAGTATCTTGTTTGTTGCCAAACGGTTGCCTAAATGCTTATATCTGATTAGTCCCTACTGCTCAGGCTGTTGCCATGGATACCCAGCCTGTTAAGCGCCATATAAGGGTGTGTCCAGTGCGACCGTAGATGTCGTGCAGACTCAGTCTAAAGTGACTTCCTTTTCATCTGCACTGATGAGGAAGAACTGGACAGGTAACCGCTAATATCCAGTAGCCTTCTACCATATTCATTTCACCTGTCCTCTTTTCAGATCAGTGCATATGAAGGTGGAGACCAGCAGAGAATACCCCTCTAGTCTTATGTGGCTGTAGTTACACATAACAGTTGATTGGTTGTCTTATCACTTTGACCCATCCCTATTGTTCTTCTGCTGGCTGGTTAAGCTGCCCTTCTGTAAATATCAGAGATGATTGGTTCTTTCTGTAGCGATGGCATCACCTGCCCTTTAACCTtctaaaatactttttttcttccTGTGAACTTGTTGCTCTTatcttttttaaataaataaaatctgtaATCTAA

Function

NR:

description
PREDICTED: cohesin subunit SA-1

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982728.1 False 4241 mRNA 0.54 26 15530602 15573947
XM_036982727.1 True 5322 mRNA 0.51 25 15548777 15575474

Neighbor

gene id symbol gene type direction distance location
LOC110528898 LOC106574671 coding upstream 14916 15513865 ~ 15515686 (+)
LOC110528777 LOC106575448 coding upstream 25409 15499437 ~ 15505193 (+)
LOC110528902 atr coding upstream 31775 15492870 ~ 15498827 (+)
LOC110528871 LOC105019803 coding upstream 41357 15478409 ~ 15489245 (+)
LOC110528896 LOC106595470 coding upstream 57720 15457306 ~ 15472882 (+)
ppp2r3a ppp2r3a coding downstream 30483 15605957 ~ 15647056 (+)
fndc3ba LOC105019796 coding downstream 74072 15649546 ~ 15814242 (+)
LOC110495697 LOC106574566 coding downstream 256336 15831810 ~ 15868293 (+)
LOC110495702 LOC106574475 coding downstream 297672 15873146 ~ 15883313 (+)
LOC110528900 NA coding downstream 334316 15903494 ~ 15927285 (+)
G578404 NA non-coding upstream 5787 15524265 ~ 15524815 (+)
G578398 NA non-coding upstream 22158 15508171 ~ 15508444 (+)
G578383 NA non-coding upstream 88025 15441415 ~ 15442577 (+)
G578344 NA non-coding upstream 111919 15417797 ~ 15418683 (+)
G578303 NA non-coding upstream 150574 15375703 ~ 15380028 (+)
G578356 LOC106574468 non-coding downstream 3462 15578936 ~ 15582633 (+)
G578427 NA non-coding downstream 15915 15591389 ~ 15591597 (+)
G578429 NA non-coding downstream 22600 15598074 ~ 15598341 (+)
G578430 NA non-coding downstream 24263 15599737 ~ 15599961 (+)
G578431 NA non-coding downstream 28159 15603633 ~ 15603910 (+)
G578389 NA other upstream 66237 15462245 ~ 15464365 (+)
G578031 NA other upstream 274395 15255171 ~ 15256207 (+)
G577909 NA other upstream 516067 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 558995 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 418184 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 470809 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 882571 16457220 ~ 16463699 (+)
G579566 NA other downstream 1243068 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1466935 17042409 ~ 17097924 (+)

Expression


Co-expression Network