LOC110528900


Basic Information

Item Value
gene id LOC110528900
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 15903494 ~ 15927285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984409.1
ATGGAAGGAAATAGCTTACCTGAATCTAGAGTTACTGGTGTGTGTAAAGTGCAGGAGGTTTTTGTACGGCTGTTCAATGAGTCTGTGTCACTGTGGTGGACTTTCGGTGGAGGCACCAAACTCATCGTTGACTTGGGTGTGGTACCTCCCTCCCTGACTGTCCTACTTCCCTCCAGTGAGGAGCAGGACCAGGGGAATGTGGCCCTAGTGTGCCTGGCCAACAGGGGCTTCCCGGAGGGCTGGAAGCTGGGTTGGAGGCTGGGGGCCGGGGGGGCCTTGCAGGGCAGCCAGAGTCTGGAGGTCCTGGAGAAGGATGGTCACTACAGCTGGAGCAGCAGCCTCACCCTCCCCACTGACCAGTGGAGGAAGGCTGGCTCAGTCACCTGTGAGGCCACCCTAAAGGACCAGACCCCCGTCACTCACACACTGGAGccacaccactgctcccagtAGACACCCTGTACACAGAGAACATCTACCTACAGAGAACATCTACCTAGCTTCATCTCTGGTCATCAATCTGGGATTCTGCATCTTTAAATCTGTACCTGTGTTTTATTGCTTCTGCATTCAGATTGGAAATGTTAACTAAATAAAATACTTTGTATTAATGTCAAA
>TU660264
TTTGACAGACAATCAGTGGTAGGGTTGAATGTGTGTTGTGTAGAGAGTTACTGGTGTGTGTAAAGTGCAGGAGGTTTTTGTACGGCTGTTCAATGAGTCTGTGTCACTGTGGTGGACTTTCGGTGGAGGCACCAAACTCATCGTTGACTTGGGTGTGGTACCTCCCTCCCTGACTGTCCTACTTCCCTCCAGTGAGGAGCAGGACCAGGGGAATGTGGCCCTAGTGTGCCTGGCCAACAGGGGCTTCCCGGAGGGCTGGAAGCTGGGTTGGAGGCTGGGGGCCGGGGGGGCCTTGCAGGGCAGCCAGAGTCTGGAGGTCCTGGAGAAGGATGGTCACTACAGCTGGAGCAGCAGCCTCACCCTCCCCACTGACCAGTGGAGGAAGGCTGGCTCAGTCACCTGTGAGGCCACCCTAAAGGACCAGACCCCCGTCACTCACACACTGGAGccacaccactgctcccagtAGACACCCTGTACACAGAGAACATCTACTTATCTGTCATTCTATCATTCTAAATATCTATCTAGAGCTTCATCTCTGGTCATCAATCTGGGATTCTGCATCTTTAAATCTGTACCTGTGTTTTATTGCTTCTGCATTCAGATTGGAAATATTAACTAAATAAAATACTT
>TU660265
TTTGACAGACAATCAGTGGTAGGGTTGAATGTGTGTTGTGTAGAGAGTTACTGGTGTGTGTAAAGTGCAGGAGGTTTTTGTACGGCTGTTCAATGAGTCTGTGTCACTGTGGTGGACTTTCGGTGGAGGCACCAAACTCATCGTTGACTTGGGTGTGGTACCTCCCTCCCTGACTGTCCTACTTCCCTCCAGTGAGGAGCAGGACCAGGGGAATGTGGCTCTAGTGTGCCTGGCCAACAGGGGCTTCCCGGAGGGCTGGAAGCTGGGTTGGAGGCTGGGGGCCGGGGGGGCCTTGCAGGGCAGCCAGAGTCTGGAGGTCCTGGAGAAGGACAGTCACTACAGCTGGAGCAGCAGCCTCACCCTCCCCACTGACCAGTGGAGGAAGGCTGGCTCAGTCACCTGTGAGGCCACCCTAAAGGACCAGACCCCCGTCACTCACACACTGGAGccacaccactgctcccagtAGACACCCTGTACACAGAGAACATCTACCTATCTGGCATTCTATCATTCTAAATATCTATCTAGAGCTTCATCTTTGGTCATCAATCTGGGATTCTGCATCTTTAAATCTGTACCTGTGTTTTATTGCTTCTGCATTCAGATTGGAAATGTTAACTAAATATCTATCTAGAGCTTCATCTCTGGTCATCAATCTGGGATTCTGCATCTTTAAATCTGTACCTGTGTTTTATTGCTTCTGCATTCAGATTGGAAATATTAACTAAATAAAATACTT
>TU660262
GGGGGGGCCTTGCAGGGCAGCCAGAGTCTGGAGGTCCTGGAGAAGGACAGTCACTACAGCTGGAGCAGCAGCCTCACCCTCCCCACTGACCAGTGGAGGAAGGCTGGCTCAGTCACCTGTGAGGCCACCCTAAAGGACCAGACCCCCGTCACTCACACACTGGAGccacaccactgctcccagtAGACACCCTGTACACAGAGAACATCTACTTATCTGTCATTCTATCATTCTAAATATCTATCTAGAGCTTCATCTCTGGTCATCAATCTGGGATTCTGCATCTTTAAATCTGTACCTGTGTTTTATTGCTTCTGCATTCAGATTGGAAATATTAACTAAATAAAATACTT
>TU660263
ACAATAACAATATTAAACATGGAAGGAAATAGCTTACCTGAATCTGTGTGAAGGCCTGGAATTGACTACAGTATTTAGTTACATGTAACTTTATTCATTAAATACTGGTGTATTTCTATTCTACATGGCTGCTTCTTATACTTAGTGAGTTTGTCAGAGATATTACACATCTCCAACATTTATATTTTATAGTCAGGGGGGAATTCAGCAAAAAGTAATAATCTAAAATATCAAACTTAAACTAATTTGAAAAGTTATGACCTACACATGCTGTTTTTGACAGACAATCAGTGGTAGGGTTGAATGTGTGTTGTGTAGAGAGTTACTGGTGTGTGTAAAGTGCAGGAGGTTTTTGTACGGCTGTTCAATGAGTCTGTGTCACTGTGGTGGACTTTCGGTGGAGGCACCAAACTCATCGTTGACTTGGGTGTGGTACCTCCCTCCCTGACTGTCCTACTTCCCTCCAGTGAGGAGCAGGACCAGGGGAATGTGGCCCTAGTGTGCCTGGCCAACAGGGGCTTCCCGGAGGGCTGGAAGCTGGGTTGGAGGCTGGGGGCCGGGGGGGCCTTGCAGGGCAGCCAGAGTCTGGAGGTCCTGGAGAAGGATGGTCACTACAGCTGGAGCAGCAGCCTCACCCTCCCCACTGACCAGTGGAGGAAGGCTGGCTCAGTCACCTGTGAGGCCACCCTAAAGGACCAGACCCCCGTCACTCACACACTGGAGccacaccactgctcccagtAGACACCCTGTACACAGAGAACATCTACTTATCTGTCATTCTATCATTCTAAATATCTATCTAGAGCTTCATCTCTGGTCATCAATCTGGGATTCTGCATCTTTAAATCTGTACCTGTGTTTTATTGCTTCTGCATTCAGATTGGAAATATTAACTAAATAAAATACTT

Function

NR:

description
immunoglobulin kappa light chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984409.1 False 618 mRNA 0.53 4 15909790 15927285
TU660264 False 636 lncRNA 0.52 2 15903494 15911223
TU660265 False 742 lncRNA 0.49 3 15903494 15911223
TU660262 False 353 lncRNA 0.49 2 15904318 15911223
TU660263 True 911 lncRNA 0.45 2 15909772 15911223

Neighbor

gene id symbol gene type direction distance location
LOC110495702 LOC106574475 coding upstream 26477 15873146 ~ 15883313 (+)
LOC110495697 LOC106574566 coding upstream 41497 15831810 ~ 15868293 (+)
fndc3ba LOC105019796 coding upstream 95548 15649546 ~ 15814242 (+)
ppp2r3a ppp2r3a coding upstream 262734 15605957 ~ 15647056 (+)
stag1a LOC106575446 coding upstream 334316 15530602 ~ 15575474 (+)
LOC110528779 NA coding downstream 6141 15933426 ~ 15935198 (+)
LOC110518760 NA coding downstream 14840 15942125 ~ 15943670 (+)
LOC110495721 NA coding downstream 26010 15949966 ~ 15955119 (+)
LOC118965263 NA coding downstream 42173 15969458 ~ 15971366 (+)
LOC110528907 LOC106575427 coding downstream 57355 15984640 ~ 15989128 (+)
G578755 NA non-coding upstream 14006 15895436 ~ 15895784 (+)
G578496 NA non-coding upstream 49301 15847040 ~ 15860489 (+)
G578351 NA non-coding upstream 90304 15816586 ~ 15819486 (+)
G578479 NA non-coding upstream 118373 15789314 ~ 15791417 (+)
G578465 NA non-coding upstream 118446 15746214 ~ 15791344 (+)
G578786 NA non-coding downstream 9651 15936936 ~ 15937968 (+)
G578788 NA non-coding downstream 23022 15950307 ~ 15954402 (+)
G578793 NA non-coding downstream 46709 15973994 ~ 16030905 (+)
LOC110528902 atr other upstream 411204 15492870 ~ 15498827 (+)
G578389 NA other upstream 445425 15462245 ~ 15464365 (+)
G578031 NA other upstream 653583 15255171 ~ 15256207 (+)
G577909 NA other upstream 895255 14972625 ~ 15014535 (+)
G577876 LOC106575485 other upstream 938183 14961205 ~ 14971607 (+)
LOC110528906 LOC106574480 other downstream 66373 15993464 ~ 16004993 (+)
LOC110528915 LOC106574584 other downstream 118998 16046065 ~ 16048048 (+)
LOC110528786 omp-1 other downstream 530760 16457220 ~ 16463699 (+)
G579566 NA other downstream 891257 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 1115124 17042409 ~ 17097924 (+)
G578770 NA non-coding downstream 6058 15917281 ~ 15918738 (+)
G578766 NA non-coding downstream 14993 15926216 ~ 15963543 (+)

Expression


Co-expression Network