LOC110528915 (LOC106574584)


Basic Information

Item Value
gene id LOC110528915
gene name LOC106574584
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16046065 ~ 16048048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611100.2
gttccgctagcggaacgcctgcgctagaaaggttaatagacgaagagagttccaaacctctcagcCAATAACAGATGGTTTTCAGTTTTCCTCTCCCCACTTAAACCATTCTCAAGCAGAATTCTTGCTTGGAaatagtattgtgtgtgtgtgagagagatagggagagaggtgggttcTTTAAGTGGTCTGGTGAGATTAGCCTGTGATGTGGAGTCTCAGGGCTGCTCACTGTGTACACCAAATGAGAGgttaggcagacacacacacccaaaagGAAATTGGATGCTGATTAAAGATTGGTCTCAACAGCCAGGGGCTGTGACCTGGGATTATTGGAAAGAGGTGAACAGAGGTGTTCTATCAGACAACGCCTCTCCATCACAACATCCTCTGGCGCGTGTATGTGCGTGCATAGGACCCTCTCCGGTCAGTGGTTACCTCTGTCACTCCGCTCATGTCAGTGGTCATACATATTACAGTAGCTGTATGATGTCAGCAAACTCTATAAAATCAAGCCCCTGAATCTATCACCCTGAATCATAGCCCACCTGACCCGCCCAGTGTTCACCAAGCCCCTGCTAACCACCTGCAGAAGCCCCGCTGTATCTCCATCCCTTCTGGTTGTTTCAGCACCATGGCCAGCATTCTACTGCTTTTCCTCGCAGCCTCCTGCTGCGCATTTCTCTGTCTCGCTGACTACACCTCCTTGGAGTTTGAGACTCGCGCTCTAGAGTTCCCCCACAAATCACAAGAAGAGAAGGATCTGATTGAAGCTTTACAAGAAGTTCTGGAGAAACTGAAGAACAAACAGATGCCGTTATCAGAAAAGAAGCTTGGCTGGCTGCCGTCGTGTGACGCGGGCGAGCAGTGCGCTGTTCGCAAAGGTGCGCGTGTCGGAACGCTGTGCGGGTGTCCGCGTGGGACTACGTGCAACTTCTATGTCCTCAAGTGTTTgtaagaagagaagaggagagaaaatgaTAAACGGTGtagggaggggagcagagagaaataggagagagagaacagaagctTTTGCCTCATTCAGTGGAGCACATTCAGATCGTGGAACGTTCAGACAGAAATATTGTATGTTGAACAGATGTGTCTCTGACATGTAAAGTAAATAGGAATCATGTCAGCTTTACTTTCAATATGTTGCCCTCTCCTGTCCTGAACGGGACCCTGGTGTGTAATGGAGGGTTTGTTGTCTAACATAAAGGCTGTATCCCAAATACCAATCTATTCCCTATAATGCTCTTTTTCTGCCTGAGTCCTATTTGTCAGTCCTATGTtgctttggtcaaaagtattgcactttatagggaatagggtgtcatttaagACACTACCCAACTTGTTCCTTTATCTGTGCTCTCTGCTGTCTCGTCTATTTTGACTAAGTACAAAGAAATTCAATGAGATCAATAAAGCCCTTGTTTATAAGATGATTTACAGTTTTTTGTATGCTTCA
>TU660317
TCAGGGCTGCTCACTGTGTACACCAAATGAGAGgttaggcagacacacacacccaaaagGAAATTGGATGCTGATTAAAGATTGGTCTCAACAGCCAGGGGCTGTGACCTGGGATTATTGGAAAGAGGTGAACAGAGGTGTTCTATCAGACAACGCCTCTCCATCACAACATCCTCTGGCGCGTGTATGTGCGTGCATAGGACCCTCTCCGGTCAGTGGTTACCTCTGTCACTCCGCTCATGTCAGTGGTCATACATATTACAGTAGCTGTATGATGTCAGCAAACTCTATAAAATCAAGCCCCTGAATCTATCACCCTGAATCATAGCCCACCTGACCCGCCCAGTGTTCACCAAGCCCCTGCTAACCACCTGCAGAAGCCCCGCTGTATCTCCATCCCTTCTGGTTGTTTCAGCACCATGGCCAGCATTCTACTGCTTTTCCTCGCAGCCTCCTGCTGCGCATTTCTCTGTCTCGCTGACTACACCTCCTTGGAGTTTGAGACTCGCGCTCTAGAGTTCCCCCACAAATCACAAGAAGAGAAGGATCTGATTGAAGCTTTACAAGAAGTTCTGGAGAAACTGAAGAACAAACAGATGCCGTTATCAGAAAAGAAGCTTGGCTGGCTGCCGTCGTGTGACGCGGGCGAGCAGTGCGCTGTTCGCAAAGGTGCGCGTGTCGGAACGCTGTGCGGGTGTCCGCGTGGGACTACGTGCAACTTCTATGTCCTCAAGTGTTTgtaagaagagaagaggagagaaaatgaTAAACGGTGtagggaggggagcagagagaaataggagagagagaacagaagctTTTGCCTCATTCAGTGGAGCACATTCAGATCGTGGAACGTTCAGACAGAAATATTGTATGTTGAACAGATGTGTCTCTGACATGTAAAGTAAATAGGAATCATGTCAGCTTTACTTTCAATATGTTGCCCTCTCCTGTCCTGAACGGGACCCTGGTGTGTAATGGAGGGTTTGTTGTCTAACATAAAGGCTGTATCCCAAATACCAATCTATTCCCTATAATGCTCTTTTTCTGCCTGAGTCCTATTTGTCAGTCCTATGTtgctttggtcaaaagtattgcactttatagggaatagggtgtcatttaagACACTACCCAACTTGTTCCTTTATCTGTGCTCTCTGCTGTCTCGTCTATTTTGACTAAGTACAAAGAAATTCAATGAGATCAATAAAG

Function

NR:

description
cocaine- and amphetamine-regulated transcript protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611100.2 False 1477 mRNA 0.46 3 16046065 16048048
TU660317 True 1218 TUCP 0.47 3 16046283 16048007

Neighbor

gene id symbol gene type direction distance location
LOC110528881 LOC106575246 coding upstream 11563 16026218 ~ 16034502 (+)
LOC118936678 NA coding upstream 22339 16017180 ~ 16025072 (+)
LOC110528906 LOC106574480 coding upstream 41400 15993464 ~ 16004993 (+)
LOC110528907 LOC106575427 coding upstream 56937 15984640 ~ 15989128 (+)
LOC118965263 NA coding upstream 74699 15969458 ~ 15971366 (+)
LOC110528868 prdm9 coding downstream 30791 16078839 ~ 16097818 (+)
LOC110528863 LOC106575439 coding downstream 76227 16124275 ~ 16142191 (+)
LOC110528882 LOC106574488 coding downstream 113645 16161693 ~ 16177026 (+)
LOC110528873 ino1a coding downstream 154141 16202189 ~ 16210165 (+)
LOC110528895 LOC106574495 coding downstream 181756 16229804 ~ 16268664 (+)
G578793 NA non-coding upstream 15160 15973994 ~ 16030905 (+)
G578808 NA non-coding upstream 32213 16013363 ~ 16013852 (+)
LOC110495721 NA non-coding upstream 90950 15949966 ~ 15955119 (+)
G578788 NA non-coding upstream 91663 15950307 ~ 15954402 (+)
G578831 NA non-coding downstream 21959 16070007 ~ 16070295 (+)
G578848 NA non-coding downstream 62658 16110706 ~ 16110972 (+)
G578859 NA non-coding downstream 78999 16127047 ~ 16127308 (+)
G578860 NA non-coding downstream 82893 16130941 ~ 16131267 (+)
G578865 NA non-coding downstream 85993 16134041 ~ 16134385 (+)
LOC110528902 atr other upstream 547479 15492870 ~ 15498827 (+)
G578389 NA other upstream 581700 15462245 ~ 15464365 (+)
G578031 NA other upstream 789858 15255171 ~ 15256207 (+)
G577909 NA other upstream 1031530 14972625 ~ 15014535 (+)
LOC110528786 omp-1 other downstream 409997 16457220 ~ 16463699 (+)
G579566 NA other downstream 770494 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 994361 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 1285676 17333699 ~ 17336419 (+)
G580179 NA other downstream 1350745 17398793 ~ 17400533 (+)
G578766 NA non-coding upstream 82740 15926216 ~ 15963543 (+)

Expression


Co-expression Network