LOC110528863 (LOC106575439)


Basic Information

Item Value
gene id LOC110528863
gene name LOC106575439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16124275 ~ 16142191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611023.2
AGCGGTGCGCTTTTTCtacggttctctctctctctctctatctctctcatccaCATTGCAGTCCTGTCACGTTCCCTCTGCTCCCCCCATCCGCCTCAACCGCTCCaggagaggcaaggagagagggaaggaagagtgCATCTGAAAAGCAAACAGACATGTCGACAGCCAACGCATAAAGTCTCCCATCGGCTGTTCGTGGATTTCTTCGCGGGACCTGATGTGGTGAGGGGTGGGTGTGTGCCGCTGCCCTGGGCTGGGCTGAAGGCAGAGGAGGTAGGATGCTGTGGCTCTCCCTGCTGTCTGTGGTGGTCCTGGGTTGTGTGACCCCgacccagacacacactcacacacacaccccgacgcccacctccacacacacccctATGGTGGACAGCTCGGAGGAGGAGGTGGATGAACCGTGCTTCGAGCCGTGCACGTGCGAGGTCAAAGAGGGAGTGTTACACGTGCACTGTGATGGGCGTGGCTTCACTAACGCCAGCCAGgtGTCCCAGTCTTGGCTCCGCCCCTTCAAGCTCAACCTGCAGAGGAACTCCTTGAGGCGTCTCTATAGCAACGGCTTCCTGCACCATAGCAATGCCGTGGCGATAAACCTAGGCAACAACGCGCTGCAGGACATCCGTGCCGGGGCGTTTCATGGTCTGGGGACACTGAGACGCCTCTACCTCCACGAGAACAAGCTGGAGGTTTTCCGCAACGACACCTTCTCTGGCCTGGAGGCACTGGAGTACCTGCAGGCCGACTACAACGTCATCAAACGCATCGACAGCGGGGCGCTACGCTACCTGCTTAAATTACGAGTGCTCATCCTCAACGACAACCTGATCCCTGCTCTGCCTCCTCACCTCTTCAGatctgtgtctctgACCCACCTGGACCTGCGGGGGAACCGTCTGAAGAGCCTGGCCTACGCCGGGACCCTGGAGTACGTGGGCCGCAGCCTGATGGAGCTCCAGCTGGAGGAGAACCCCTGGATCTGTGGCTGTGAGGCTGTCCAGCTGCAGACCTGGCTGGGACACATCCCCTACACCGCAGTGGTGGGGGACATCACCTGCGAATACCCCTTCCACCTGCACGGGAAAGACCTGAGGGAGATACCACGCAAAGAACTGTGTGccggggaggtggagggagagggggagaaggagggagagagggagaagcacgGAGGGGTACAGCCTCCTCAGCATCCGCCCTCTAACCCAAAAGCGAACCCCAACTCTGGGAGGCCCAGACCCACCAAGCCGTCCTCCATGGTTCACCATCAGAACACACATACCTCATCTTCGTCAACTTCATCATCGGCGGagcggagggggagagagaggtcccCTCGGCCCACTAAGCGTCCCCGGCCCTCCAGGACGCCCCCCACCCAGCGTAGCCTCCTCCCCAACCAGCCCCCTCCCATCGCAGGGTACCAGACTCGCCCCCCCATCCCCATCATATGTCCTCTGGGGTGCACCTGTAACCTCCACATCTCAGACCTAGGATTGACAGTCAACTGTAAGGAGAGTGGCTTCAACAACGTGTCCCAGCTCATGCCACGCCCCCTCAACGGACGGAAGCTGTACCTCAGCGGCAACCTCATCCAGCGGATCTATAAGTCAGATTTCTGGAATTTTTCCAGTCTGGATCTACTTCACCTGGGAAACAACCGGATCTCCTTTATTCAGgagggAGCGTTCTCCAGCCTGCCGACCCTGAGGAGTCTCTATCTGAACGGCAACAACCTGCAGAGGCTTAGCCCACACATGTTCCTGGGTCTACTTAACCTCAGGTACCTGTACTTTGAGTATAATGAGATCGGTGTGGTGGAGGCAGGAGTGTTCAGCCCCATGCCGTCTCTCCAGCTGCTCTTCCTCAACGCCAACCTGCTGAGGTCACTTCCTGTCGGAGTGTTCCAGggcatctccctctctcgcctCAACCTCCGCAACAACCACTTCCTCAGCCTGCCTGTAGAGGGGGTGTTAGAGCACCTCACTGGACTGGTGCAGGTGGACCTGCAGCAGAACCCATGGGAGTGCCGGTGTGGTGCGGCCCCTCTGAAGCGCTGGCTGGAGGGCCTGagtgcggtggtggtggtgggggaggtGGTCTGTCACTCACCAGAAGAGACCACAGGTACAGACCTTCGCTCTCTTTCCCTGGACCTACTCTGTCCAGACCTGCACACCCACCAGGCCACGGTGGAGAACCAGGGGGAGTGGAACAGCTCCACAGCCCCAGACGGAGATTTCTCTCTGGGCTACCCCGTGCCAGGCAATGGCCCCCTGGGTCCCATCACCAAGGCTTCCATCCCTCTGTCGGTGTTGGTGCTCAGCCTGCTGGTGCTGTTCGTGTCGGCGTTCTTTGCGGCAGCGGCGCTGATCGCCTATGCCCTGAGGAGGCGGGACAAGCTGCCGTTCCGGCGACAGGGTGAGGTGGATCTGGCCGGGATCCAGATGGAATGTGGGATATTCACCGAGCAGCAGCACCACAGGTTACCGGTACCAAAGACCCCTCCTCCGTCTGCCTTGCAGCATAGCCTCGTCTACGATAGCATCCTCCCCGTCGTCCCTGGCCCCAACCCTAACCTCAGTCCCGCAACACACATGTGCAGTAGCCCAGTCTATAAGAATGAGGATGATTCAGTGGtgaggcagcaacagcagcagttcTCTGCCTCTAAAGAGAAAGGGAACGTGGGAAGACACCGCtcagggggggggagagagagcgaaggacaCTATCGtttggtggcagagagagagagagaatggaatatGGAGGTGTCCCCCCCCTCCATCAGTACCGTTGCCGGGGCAGTGGGACCCCCTCTTTCAGATCTCCACGGAAACGGGACCCTCTGCCCAACGGTCATAGACAGCCAGGGGCCCACCCCCAAGGTGGGATTGGTTGACTGCCTGTTTGGGATCTCTGGAATGTCCGCCGCCGTCCCAGAGTTCCGAGACCTGCCGGACATGTATGCACGTCCCCCACCACCCCGCTATCCCCACCCTCCACAACCCCCTCAGCCCCCCGAACCCAAAGAGGAAACTAGAGCCAGCCAATCACTCGTGGTTACTACAATGACAGCGTGCGCGGGGCCAAGCAGTAGTAATCAGAGCCAGAACTCAGAGTTTCCACGAGAGTTGAGAATGAGACTCAGTACCAAGCCGGATTACATGGAAGTCCTGGACAGATCTTATCAGTTCTAATAGATAAATGTTACTATGGAACCACTGGCGATGACAAGAAATGGCTCCTGTAATATGTCATGTCTTGAACATGTTGATATGCAGAGGTAAACCTGTGTGTGGGGAGAGCTGTTAGGACTAGCATGAAGTTACTCTTAGATGAGGCTTTGGAAAggataagctgatcctagatcagtgccTGAGACTAGCAATTATTTTTTGTACCATTGATGACTAAGTATCAGATCAGGCTTTTTTTATTCCCCGCATCACAAAACAAGACAATGTGGTGGGTGTGTGTTCATTGTGTATCTTTGTGGTAGGTACAGACCTTCGCTCTCTTTCCCTGGTGGGTGTGTGTTCATGTTAGACAatacagtgggtgtgtgtgtgttcatgtttgctCTCTAAAGACCTGCTGATGAGACACTCAGTTGCTCTGCCTCTAGAATAACACCATGAAGcacagtgagtgagagagcgagagagagagagagagagagagactgagacacaggGAGGAGTCAGGAATGAAGTGGTAAAGAGAAGGGGGTGTGAACGCAGAGTCCCAGTCTGATGGGCGACTAATGTAGCATGTAACACTTTCCATATGAAAAGAACGTGGAAGAGGTGTTGAAGTGTGTTTACCCTGGACACTACATCCCTGGTATTAGTGTCACTGTGTCTGAGTGTTACTGTGGACCACATGCGGCTGGTGGTACCTTCattgaggaggacgggctcattgtaatggctggaacagaataatggaatggtatcaaacgtgTTCggtaccattccattcactccatcccagccattattatgagccgtcctcctctcactAGCCTCCTGTGGTGTGGAAAGAGGGAGATATGACACAGTCAAGTGCCTTAGCAACTAGCAGCCAGACCTGGGTCTAATACACATGTCCGATACTTTCAAAAAAGTGCTTGAGATGAGTTTGGATTTAGCTTACACACTTATGGGGCTATTCTGTTGGTGCCACAGTTGTACTGGGCAAACTAACTCAAAGGCAGCTCAAGTACAGTATTTGAATGTATTTGACACACGTATTTGACCAGGGCAGCAGCCAGCAAGTGGTCAAGGCTTATTTTTCTAGGAACACAGATCTATTTATCTAAACAGAGGTTTGAATACTAATGGCTAATGGCTGGGACTCAGAGCTGCTCTGGGAAATTGAGGGCCCTATTCAATCAAAAGCTGAAACTGTATTTCCCGGATTATAGTCGAAAGTAGCCTTCCTCATGTGAAGAGACAGAGGAGTATATTTGCATTTGTAAGAGTTTATTTGCCTTTGTATGTTTGCATTTCCTGAATAGGGCTCTGAGTGTGTTTGTTCTCAGGTGGAATATAAGGACCTTTGGGATGCGAGAGAACCATGAGACACAGCTATAAACTCCTAAAGGGGATGTTGACTTGACTACTTTCATCGGACAATGGCAGTCAAGTCACTTCATTGGATTTAAAGTGGGAAAAAGAACAGAAAACCAGGACGAAGCGTTTCGACACGGGAGAGACACTTCTATTAAATATTGATTATCTTTTAAAGGAGGTACCTTTTATGCTTTTATCTCCTACAAATATTAGAGGAAATTGTGAATATATTTATTCTTAGTTTCTTGTGTGTTGGAGCTTTGCTACTGTATGGGATCATATTATATCAGTGTATAGCAGAGATGGCCAATCctcctggagagatacagggTGGTTTCCGCTGGTTAGCACAACCACAAAGTCAAGATTGGCcacatataaaaaaaatatgggtttttttttgttggctttttggtcttaatttaaggttagtgtAAGGCATAAAGTTAGCAGTGTAGTTCATGTTAGGATTAAGATTAttgttaggtttaaaatcaaattttaagaagagaaattgtcAAAATAGGCTGTGGAAGCTAGTAACGACCCTACTGTAGGTGtaggcttttgctccagcccaACATAAACACTCTTCATTTTAGCGATGAAAAGCAGCTTGTTCAGATGGTATCTCTGCAGGAGGAAGTTTGGCCAGCCCTGGTGTAAAGGACAGTTCTGCATCTGGTTTAGCCTTCTCTACAGTGACCACATATATACAATAAAGGGTGCTACTCTAAAACCATGGCCTGAATTACACtgtgcctcacacacacacacacacacacacacacactggcccagAGTAGTACATTTAGAGCAGGCTCGTTCTTGCTGTTTGATGTAGTAtgtcacacatatacacacacatactccgcTGTCCTCTAATGATGCATGAAGGCAGTATTTTGAGGTATGAAGTCTAAAAGCAGTGTTAAGCCCTTACAAacaaaaagagagcgagagagaataacAAGCGTAACAGTGAGTAGAGAAAGAAAGGCCTTAGGACATGAAACATTGAAGGATATAGATAGTCTCTAATAGCGTGAAATCTGCCGTATTAATGGTAGGAAATCTATACAATCTATTTGTGAGGAGGACATCGTAGGCTGTGGAGCctaggggcagtgagtgtagtgAGGTGCCATGTGGTGAATTCATTTGGTCTTTGAGGTCTCTGCCGCCTGCTGTTCCTCTGACTGCTACAGGAGGGAGACCAACAATCTGCTCTTAGAGCCACAGTTAGAGGTATCGCAACACAACACAAATGCATATACACACGTCTAAGGTGGTTGGTGGGAGGAGATATCGAaggatgactttttgcaaatccaatccgttttccacattgattcaatgtcatcacattttTGGATTGAAATGGTGTGAAAACAACGTTGATTTGATCAGATTTTTCCCAGTGGGGGAACCATACATCATGGCATtatgtaaaataaatatattcaagcACTGAAGGTAAGTCAGATTGACTCAACTTAGTATGTACTTTTCTAATAGCCAAACACCCATGCTTAATAAATTGCAAAGCATGACAGAAACATCAAGCGTATTTTACTCTTATCTCAACATCTCTGAACATTCAAGATTTATATCCCTCTGTTTGCCTGCTAGAGATCTTAT

Function

NR:

description
SLIT and NTRK-like protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611023.2 True 6242 mRNA 0.51 10 16124275 16142191

Neighbor

gene id symbol gene type direction distance location
LOC110528868 prdm9 coding upstream 26457 16078839 ~ 16097818 (+)
LOC110528915 LOC106574584 coding upstream 76227 16046065 ~ 16048048 (+)
LOC110528881 LOC106575246 coding upstream 89773 16026218 ~ 16034502 (+)
LOC118936678 NA coding upstream 100549 16017180 ~ 16025072 (+)
LOC110528906 LOC106574480 coding upstream 119610 15993464 ~ 16004993 (+)
LOC110528882 LOC106574488 coding downstream 19502 16161693 ~ 16177026 (+)
LOC110528873 ino1a coding downstream 59998 16202189 ~ 16210165 (+)
LOC110528895 LOC106574495 coding downstream 87613 16229804 ~ 16268664 (+)
LOC110528905 LOC106574496 coding downstream 127009 16269200 ~ 16279190 (+)
LOC110528903 LOC106574506 coding downstream 202567 16344292 ~ 16356805 (+)
G578848 NA non-coding upstream 13303 16110706 ~ 16110972 (+)
G578831 NA non-coding upstream 53980 16070007 ~ 16070295 (+)
G578793 NA non-coding upstream 93370 15973994 ~ 16030905 (+)
G578808 NA non-coding upstream 110423 16013363 ~ 16013852 (+)
G578873 NA non-coding downstream 5556 16147747 ~ 16148063 (+)
G578876 NA non-coding downstream 9245 16151436 ~ 16151655 (+)
G578877 NA non-coding downstream 9828 16152019 ~ 16152232 (+)
G578863 NA non-coding downstream 12090 16154281 ~ 16181832 (+)
G578890 NA non-coding downstream 56755 16198946 ~ 16199253 (+)
LOC110528902 atr other upstream 625689 15492870 ~ 15498827 (+)
G578389 NA other upstream 659910 15462245 ~ 15464365 (+)
G578031 NA other upstream 868068 15255171 ~ 15256207 (+)
LOC110528786 omp-1 other downstream 315854 16457220 ~ 16463699 (+)
G579566 NA other downstream 676351 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 900218 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 1191533 17333699 ~ 17336419 (+)
G580179 NA other downstream 1256602 17398793 ~ 17400533 (+)

Expression


Co-expression Network