Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528882 |
| gene name | LOC106574488 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 16161693 ~ 16177026 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein LOC110528882 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036982755.1 | False | 1614 | mRNA | 0.50 | 8 | 16161693 | 16176408 |
| XM_021611053.2 | False | 1659 | mRNA | 0.49 | 8 | 16161693 | 16176472 |
| XM_036982754.1 | False | 2079 | mRNA | 0.46 | 8 | 16161693 | 16177026 |
| XM_036982753.1 | False | 2108 | mRNA | 0.47 | 8 | 16161713 | 16177021 |
| XM_036982752.1 | True | 2144 | mRNA | 0.47 | 8 | 16161715 | 16177020 |
16,144,000
16,146,000
16,148,000
16,150,000
16,152,000
16,154,000
16,156,000
16,158,000
16,160,000
16,162,000
16,164,000
16,166,000
16,168,000
16,170,000
16,172,000
16,174,000
16,176,000
16,178,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528863 | LOC106575439 | coding | upstream | 19502 | 16124275 ~ 16142191 (+) |
| LOC110528868 | prdm9 | coding | upstream | 63875 | 16078839 ~ 16097818 (+) |
| LOC110528915 | LOC106574584 | coding | upstream | 113645 | 16046065 ~ 16048048 (+) |
| LOC110528881 | LOC106575246 | coding | upstream | 127191 | 16026218 ~ 16034502 (+) |
| LOC118936678 | NA | coding | upstream | 137967 | 16017180 ~ 16025072 (+) |
| LOC110528873 | ino1a | coding | downstream | 25163 | 16202189 ~ 16210165 (+) |
| LOC110528895 | LOC106574495 | coding | downstream | 52778 | 16229804 ~ 16268664 (+) |
| LOC110528905 | LOC106574496 | coding | downstream | 92174 | 16269200 ~ 16279190 (+) |
| LOC110528903 | LOC106574506 | coding | downstream | 167732 | 16344292 ~ 16356805 (+) |
| LOC110528784 | LOC106574508 | coding | downstream | 201330 | 16378356 ~ 16397842 (+) |
| G578877 | NA | non-coding | upstream | 9461 | 16152019 ~ 16152232 (+) |
| G578876 | NA | non-coding | upstream | 10038 | 16151436 ~ 16151655 (+) |
| G578873 | NA | non-coding | upstream | 13630 | 16147747 ~ 16148063 (+) |
| G578870 | NA | non-coding | upstream | 24684 | 16136775 ~ 16137009 (+) |
| G578868 | NA | non-coding | upstream | 26013 | 16135380 ~ 16135680 (+) |
| G578890 | NA | non-coding | downstream | 21920 | 16198946 ~ 16199253 (+) |
| G578893 | NA | non-coding | downstream | 24486 | 16201512 ~ 16201797 (+) |
| G578821 | NA | non-coding | downstream | 34583 | 16211609 ~ 16212000 (+) |
| G578903 | NA | non-coding | downstream | 49847 | 16226873 ~ 16227091 (+) |
| G578904 | NA | non-coding | downstream | 51023 | 16228049 ~ 16228313 (+) |
| LOC110528906 | LOC106574480 | other | upstream | 156700 | 15993464 ~ 16004993 (+) |
| LOC110528902 | atr | other | upstream | 663107 | 15492870 ~ 15498827 (+) |
| G578389 | NA | other | upstream | 697328 | 15462245 ~ 15464365 (+) |
| G578031 | NA | other | upstream | 905486 | 15255171 ~ 15256207 (+) |
| LOC110528786 | omp-1 | other | downstream | 281019 | 16457220 ~ 16463699 (+) |
| G579566 | NA | other | downstream | 641516 | 16818542 ~ 16819890 (+) |
| LOC110527403 | LOC106574539 | other | downstream | 865383 | 17042409 ~ 17097924 (+) |
| si:ch211-181l5.2 | cl10a | other | downstream | 1156698 | 17333699 ~ 17336419 (+) |
| G580179 | NA | other | downstream | 1221767 | 17398793 ~ 17400533 (+) |
