LOC110528905 (LOC106574496)


Basic Information

Item Value
gene id LOC110528905
gene name LOC106574496
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16269200 ~ 16279190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982767.1
TGACATCTAAAATGGGCCTTCGGAGCGCCACCTCATTCTCTCATCACATGCAACGCCCGCTCATCGATGACTCGTACATTTTGTAGCGCAAGGGGTGGTTTCAGCTAGTAGTGAAGGCTTGTGTGTGGacattagctagccagctaatggtagctagctaacacattGTGGAATTGAAGACGCTTTTCAAGAACAGATTTTCGACACGATTGCCCCACTTGACAGCTATATCTACGAGGAATTGGACAATATACAAATCTGCTACCTAAACTTACGTTGGCTCGCTTCTCTGCTAAgatttgctagctaacgttagttatttAGCTAACAAGAAAGGATATTGCTGTGACTTAGTCAACATCTACCTAGCCCAGGTTTATTTTAAGATTCTTCAATCGGTGCCATATTATCTTAACGTTGCACGTCTTGGTGTTCAGCCTCTTTTGGtgccatttgtattttttttgacaAGGGACCAAATCAAAACCAACGCTAGCTAGCCAACAAcgttggagaaaaaaaacaaccaCGACGTGAGACCGGGTAACTGGTGTCCTAGATAACGTTAagataaatagctagccagctaacgttaacgTAGCtgtctaaaaaaaaaacaagggaaGACGCTATAGTTGTCCAAAAACGGGGTCTAGATATTTTTATCCTGGTTGCTGAGGAACACCGATAAATCCATTGACATGATGTTTCCACAATCAAGACACTCGGCTTCCTCCCAGTCCTCCCAGCCTCTCAAGTTCACCACCTCCGACTCCTGCGACCGCATTAAGGACGAATTTCAGTTCCTACAAGCACAATACCATAGCTTGAAGATGGAGTGTGACAAGCTAGCTAGTGAGAAGTCAGAGATGCAGCGTCATTACATCATGTACTACGAGATGTCTTATGGACTGAACATTGAAATGCACAAACAGGCTGAGATTGTGAAGAGACTAAACGGGATCTGTGCTCAGGTGCTCCCCTACCTATCTCAAGAGCATCAGCAGCAGGTCCTAGGGGCCATAGAGAGAGCCAAGCAGGTCACTCCTCCTGAGATGAACTCTATCATACGGCAGCAGCTCCAGGTGCACCAGTTGTCTCAGCTCCAGGGCTTGGGCCTCCCCACGATGGCCCCTCTCCCCATGGGCCTGTCTGCTCCCAGCCTCCCTCCAACCTCCAGCGCCGGACTGATGTCCCTGTCCTCCATCCTGGCCTCGCACTCTCACTCACAGGCAGCACAtgcacagGCTCAGGCCCAGCTGGCTAAAGAAGACAAGGCCAGAGatgcagcagagagagaacagagggaagaggACGGAGACAAGTCCGACTGATGGTGGAGCGTGAATgggaaggagtggagagaggggtgagacaaGTTGGACTGATGGACAACCGGGCGTGGATCTACTGTGGGAGGGCTAAGGGGAGGGGGGTGGTGAGTTGAGTGTTCATACAGTAGGTGTCACACTGTGGTTCATCTCAGTTACTCTCTGGGCCTCCACTCCATCGCTTCCTTATCCTTCTTTTTCATCTTCTATTATCATCAAATCAGTTCGTCACCAAGCCTGTTGGACAGGTCTCCTCTGTCTGACTCCTTCctcttttcctttcctctcctctgttcactATTGCCGCTGACAACCCATTGCCAACAGATActaccctgacctctaacccagaGATGTGGACTCGAGTCACGTGACTTGGACATTTCATGACTTGATACTTGACTTGGCAAAAAGAAACAACCACTTGCCAATCGACATTGACTTGAGCATTTATGACTGGTGACTTTACTTGGACAAGCTATGCGAGTCGAGACTCGGTTTGTCATCTTGCTCACAAGGTAGGCCTCTCTGTCCTTCATATCGGAGTGCTGCAGGCTTTTTGACTTTTGTTCTGTCTTCACCGATCATGTTCACGTAAATCACAACTCTCGCAGGCCGGGCACAAAGCGCGCCACTCTCCACTGTCCTGcggtatttatttagcaaacGTGATAACACGTCACTCCCAACAAACAAAAGCAAGAACTCTTAACAGAAATGTTACAGCAGCCTACACCTAAACTGTATGGGAGGAAAACGAGATTACTTCTCAGTCTGATCAACTAGGCTACTGATAACAACCAGGTGGTAATGTTATGTAGCCTATTTTATAGACCATTTATTTGTGTTAGGAGAAAATGTGACTGTGATTAAATTTGGTGTAAGTTGAATTCAAACTTGGACTGGCTAGGCTGCCTTGACCTTTTCAATCCAGAACTATTAACTGAAATGAATCAAACACTACTGATTTACATGGACTGTGTGAGTTACTTTTGAATTAAAGTTGCAGAGGCCTACACGATGCAAACCTGCGTAAAGCAAGCCTTGTGAGTTGTATTGTCCAATTGCAATTGTTGTGTCTGTAGAGGAAACTGCTGTTAGTCAGTTTGTAAAACACGTTGGTCCAAAATCATTGCAAtgaaattggcaaaaaaaaaacacttagcCTTTGACTTGAGGACCCGAAACCCAAAATTAGGGACTTGTGACTTGACCTGAGCTGTgggacttgacttgggacttgccCGTTATTTCTTGGGACTTGACTCAAAGCTTAAACTTGACTTACAAAATTGTGACTTGGTCCCATCTCAGCTCTAACcctttaacccctgacctctgttcCTCTTCTCCTAGTAGAAGTTGCCCTTAAGCTCAGATTTAAACAATCAAAACATTACTGACCTTTGATCAGTGTCTAGGGACGACTTCCTCCTGTAGGTCTCTGCTGATTGGCTGCAGAGTTACTGCTAACTCTGCTCACTGATCTCACAGACAGTGTTCTGAAAGGGCCACTTGAATAAGACAGTCAAGTGTAAAAGTCAGGagctagggtgtgtgtgtgcgcaaactTACGTTTTATTCTTATGAACCACCTTTTCCTGTTCTTCCTCCCGCCCCTGTCTGTCCACTCTCTTAACTGACCAAGTCTATGGTCCAGTCCCAAATCAACACCTAGCCCATAGGCACTTCCCCCTAGACAGAGGAACTGTCCAAGGGGTAAGGGTTGATTCTGGACGGGGCCTACATTTTAACGGGAACAAATCTTCACATCAATCGTGTTCTCATTCAGATCAGATTCTATtggtggaaagggagaggaatACATTTGCATATGTCGTTCTGTTGGTTAGCATAGCACTCGGAGCTAGCACACAGCTGTAGCGCACTAACCTATAACCTACCCGCAGATGCATAAGTCTTTCTAATTCCAGGCGATAAGGTTTAGTTCTTCTCCaggacagtaggtggcagcaaAGCCAAACCAGACCCAGGGCTGTATTCAATCAAACCCCCATTACAGTATTTACACAGACTTTATCCCCCCCAATGGGTTAATTAAAATCACAGGACCCTAAAAAACCTACTACTGCTGCCAGGTAGACTCCCCTCGCAGGTAGATGTCTAAATGTTCAGAATGAGAAGAGCGTTTTTGGGCTGTAGTTTGTAAACCAAGACACTGTAAACTTTGCTATGGCAGGTTTGATTGAATGTAGAGAGAAACCCGGACATGAATggtttgtgtgtttctgttgtgaAGGGCCCATTTATAtatcaatatacatatatactTTTTAAAGCATTTTTGTATGTTTCAAAGCTGCTTTTGGTGTGTATGCGTGTGATGGAAGACGCCGTGTCAGTGCAGCGTGTGTATTATGTGATGTGCTATGGAAAGAGGTACTacccaataccccccccccccccccctcctttcctgCCCCCTTGACAATGCTGAGGAAATGTCGCCTCCTTGTTGAGCTTTGTAAATGTAATTTTTAAAACTCTTCATTTTTGTCATTGTATGTGAAACTTCATAGGTGTGTACTTGGCGGTAATGTATGTCATTTGTGTTATGAAAAACCAATACTTATAGCTTCATTTAAACGACGTGGCAGGGAAAAGTCACATCTAATGTAAACCAACCAAACCGAAACATTGACTACACAACATGACTGAAAGCGCTCGGCAGTAAGGAAATGTCTATGGTGCCTTACAAATAAATGACTCAACGGAGA
>XM_036982768.1
GACATCTAAAATGGGCCTTCGGAGCGCCACCTCATTCTCTCATCACATGCAACGCCCGCTCATCGATGACTCGTACATTTTGTAGCGCAAGGGGTGGTTTCAGCTAGTAGTGAAGGCTTGTGTGTGGacattagctagccagctaatggtagctagctaacacattGTGGAATTGAAGACGCTTTTCAAGAACAGATTTTCGACACGATTGCCCCACTTGACAGCTATATCTACGAGGAATTGGACAATATACAAATCTGCTACCTAAACTTACGTTGGCTCGCTTCTCTGCTAAgatttgctagctaacgttagttatttAGCTAACAAGAAAGGATATTGCTGTGACTTAGTCAACATCTACCTAGCCCAGGTTTATTTTAAGATTCTTCAATCGGTGCCATATTATCTTAACGTTGCACGTCTTGGTGTTCAGCCTCTTTTGGtgccatttgtattttttttgacaAGGGACCAAATCAAAACCAACGCTAGCTAGCCAACAAcgttggagaaaaaaaacaaccaCGACGTGAGACCGGGTAACTGGTGTCCTAGATAACGTTAagataaatagctagccagctaacgttaacgTAGCtgtctaaaaaaaaaacaagggaaGACGCTATAGTTGTCCAAAAACGGGGTCTAGATATTTTTATCCTGGTTGCTGAGGAACACCGATAAATCCATTGACATGATGTTTCCACAATCAAGACACTCGGCTTCCTCCCAGTCCTCCCAGCCTCTCAAGTTCACCACCTCCGACTCCTGCGACCGCATTAAGGACGAATTTCAGTTCCTACAAGCACAATACCATAGCTTGAAGATGGAGTGTGACAAGCTAGCTAGTGAGAAGTCAGAGATGCAGCGTCATTACATCATGTACTACGAGATGTCTTATGGACTGAACATTGAAATGCACAAACAGGCTGAGATTGTGAAGAGACTAAACGGGATCTGTGCTCAGGTGCTCCCCTACCTATCTCAAGAGCATCAGCAGCAGGTCCTAGGGGCCATAGAGAGAGCCAAGCAGGTCACTCCTCCTGAGATGAACTCTATCATACGGCAGCTCCAGGTGCACCAGTTGTCTCAGCTCCAGGGCTTGGGCCTCCCCACGATGGCCCCTCTCCCCATGGGCCTGTCTGCTCCCAGCCTCCCTCCAACCTCCAGCGCCGGACTGATGTCCCTGTCCTCCATCCTGGCCTCGCACTCTCACTCACAGGCAGCACAtgcacagGCTCAGGCCCAGCTGGCTAAAGAAGACAAGGCCAGAGatgcagcagagagagaacagagggaagaggACGGAGACAAGTCCGACTGATGGTGGAGCGTGAATgggaaggagtggagagaggggtgagacaaGTTGGACTGATGGACAACCGGGCGTGGATCTACTGTGGGAGGGCTAAGGGGAGGGGGGTGGTGAGTTGAGTGTTCATACAGTAGGTGTCACACTGTGGTTCATCTCAGTTACTCTCTGGGCCTCCACTCCATCGCTTCCTTATCCTTCTTTTTCATCTTCTATTATCATCAAATCAGTTCGTCACCAAGCCTGTTGGACAGGTCTCCTCTGTCTGACTCCTTCctcttttcctttcctctcctctgttcactATTGCCGCTGACAACCCATTGCCAACAGATActaccctgacctctaacccagaGATGTGGACTCGAGTCACGTGACTTGGACATTTCATGACTTGATACTTGACTTGGCAAAAAGAAACAACCACTTGCCAATCGACATTGACTTGAGCATTTATGACTGGTGACTTTACTTGGACAAGCTATGCGAGTCGAGACTCGGTTTGTCATCTTGCTCACAAGGTAGGCCTCTCTGTCCTTCATATCGGAGTGCTGCAGGCTTTTTGACTTTTGTTCTGTCTTCACCGATCATGTTCACGTAAATCACAACTCTCGCAGGCCGGGCACAAAGCGCGCCACTCTCCACTGTCCTGcggtatttatttagcaaacGTGATAACACGTCACTCCCAACAAACAAAAGCAAGAACTCTTAACAGAAATGTTACAGCAGCCTACACCTAAACTGTATGGGAGGAAAACGAGATTACTTCTCAGTCTGATCAACTAGGCTACTGATAACAACCAGGTGGTAATGTTATGTAGCCTATTTTATAGACCATTTATTTGTGTTAGGAGAAAATGTGACTGTGATTAAATTTGGTGTAAGTTGAATTCAAACTTGGACTGGCTAGGCTGCCTTGACCTTTTCAATCCAGAACTATTAACTGAAATGAATCAAACACTACTGATTTACATGGACTGTGTGAGTTACTTTTGAATTAAAGTTGCAGAGGCCTACACGATGCAAACCTGCGTAAAGCAAGCCTTGTGAGTTGTATTGTCCAATTGCAATTGTTGTGTCTGTAGAGGAAACTGCTGTTAGTCAGTTTGTAAAACACGTTGGTCCAAAATCATTGCAAtgaaattggcaaaaaaaaaacacttagcCTTTGACTTGAGGACCCGAAACCCAAAATTAGGGACTTGTGACTTGACCTGAGCTGTgggacttgacttgggacttgccCGTTATTTCTTGGGACTTGACTCAAAGCTTAAACTTGACTTACAAAATTGTGACTTGGTCCCATCTCAGCTCTAACcctttaacccctgacctctgttcCTCTTCTCCTAGTAGAAGTTGCCCTTAAGCTCAGATTTAAACAATCAAAACATTACTGACCTTTGATCAGTGTCTAGGGACGACTTCCTCCTGTAGGTCTCTGCTGATTGGCTGCAGAGTTACTGCTAACTCTGCTCACTGATCTCACAGACAGTGTTCTGAAAGGGCCACTTGAATAAGACAGTCAAGTGTAAAAGTCAGGagctagggtgtgtgtgtgcgcaaactTACGTTTTATTCTTATGAACCACCTTTTCCTGTTCTTCCTCCCGCCCCTGTCTGTCCACTCTCTTAACTGACCAAGTCTATGGTCCAGTCCCAAATCAACACCTAGCCCATAGGCACTTCCCCCTAGACAGAGGAACTGTCCAAGGGGTAAGGGTTGATTCTGGACGGGGCCTACATTTTAACGGGAACAAATCTTCACATCAATCGTGTTCTCATTCAGATCAGATTCTATtggtggaaagggagaggaatACATTTGCATATGTCGTTCTGTTGGTTAGCATAGCACTCGGAGCTAGCACACAGCTGTAGCGCACTAACCTATAACCTACCCGCAGATGCATAAGTCTTTCTAATTCCAGGCGATAAGGTTTAGTTCTTCTCCaggacagtaggtggcagcaaAGCCAAACCAGACCCAGGGCTGTATTCAATCAAACCCCCATTACAGTATTTACACAGACTTTATCCCCCCCAATGGGTTAATTAAAATCACAGGACCCTAAAAAACCTACTACTGCTGCCAGGTAGACTCCCCTCGCAGGTAGATGTCTAAATGTTCAGAATGAGAAGAGCGTTTTTGGGCTGTAGTTTGTAAACCAAGACACTGTAAACTTTGCTATGGCAGGTTTGATTGAATGTAGAGAGAAACCCGGACATGAATggtttgtgtgtttctgttgtgaAGGGCCCATTTATAtatcaatatacatatatactTTTTAAAGCATTTTTGTATGTTTCAAAGCTGCTTTTGGTGTGTATGCGTGTGATGGAAGACGCCGTGTCAGTGCAGCGTGTGTATTATGTGATGTGCTATGGAAAGAGGTACTacccaataccccccccccccccccctcctttcctgCCCCCTTGACAATGCTGAGGAAATGTCGCCTCCTTGTTGAGCTTTGTAAATGTAATTTTTAAAACTCTTCATTTTTGTCATTGTATGTGAAACTTCATAGGTGTGTACTTGGCGGTAATGTATGTCATTTGTGTTATGAAAAACCAATACTTATAGCTTCATTTAAACGACGTGGCAGGGAAAAGTCACATCTAATGTAAACCAACCAAACCGAAACATTGACTACACAACATGACTGAAAGCGCTCGGCAGTAAGGAAATGTCTATGGTGCCTTACAAATAAATGACTCAACGGAGA

Function

NR:

description
PREDICTED: amino-terminal enhancer of split-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982767.1 False 4069 mRNA 0.45 8 16269200 16279190
XM_036982768.1 True 4065 mRNA 0.45 8 16269201 16279190

Neighbor

gene id symbol gene type direction distance location
LOC110528895 LOC106574495 coding upstream 536 16229804 ~ 16268664 (+)
LOC110528873 ino1a coding upstream 59035 16202189 ~ 16210165 (+)
LOC110528882 LOC106574488 coding upstream 92174 16161693 ~ 16177026 (+)
LOC110528863 LOC106575439 coding upstream 127009 16124275 ~ 16142191 (+)
LOC110528868 prdm9 coding upstream 171382 16078839 ~ 16097818 (+)
LOC110528903 LOC106574506 coding downstream 65568 16344292 ~ 16356805 (+)
LOC110528784 LOC106574508 coding downstream 99166 16378356 ~ 16397842 (+)
LOC118965265 LOC106575416 coding downstream 146516 16425706 ~ 16428378 (+)
d2hgdh LOC106575380 coding downstream 152094 16431284 ~ 16435714 (+)
LOC110528885 c1ql2 coding downstream 167198 16446388 ~ 16452050 (+)
G578905 NA non-coding upstream 40363 16228624 ~ 16228837 (+)
G578904 NA non-coding upstream 40887 16228049 ~ 16228313 (+)
G578903 NA non-coding upstream 42109 16226873 ~ 16227091 (+)
G578821 NA non-coding upstream 57200 16211609 ~ 16212000 (+)
G578920 NA non-coding downstream 1852 16281042 ~ 16281272 (+)
G578934 LOC106575386 non-coding downstream 26506 16305696 ~ 16309378 (+)
G578936 LOC106574500 non-coding downstream 31031 16310221 ~ 16311581 (+)
G578977 LOC106575417 non-coding downstream 119507 16398697 ~ 16399098 (+)
LOC110528915 LOC106574584 other upstream 221193 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 264207 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 770614 15492870 ~ 15498827 (+)
G578389 NA other upstream 804835 15462245 ~ 15464365 (+)
G578031 NA other upstream 1012993 15255171 ~ 15256207 (+)
LOC110528786 omp-1 other downstream 178855 16457220 ~ 16463699 (+)
G579566 NA other downstream 539352 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 763219 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 1054534 17333699 ~ 17336419 (+)
G580179 NA other downstream 1119603 17398793 ~ 17400533 (+)

Expression


Co-expression Network