LOC110528887 (LOC106574501)


Basic Information

Item Value
gene id LOC110528887
gene name LOC106574501
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16316980 ~ 16320794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611068.2
TTCTGCTCTTCTCAGAGATCGCATTACAGCAAGCTAGCTGTATGTAAGCTATATTTAGCTAACATTATCACAGTTTATCCTTCCATTTCGTCGCTAAAGTTAGGTTTTATTTCACATTAAGAATGTCAGAAAGAAAAGTTTTAAACAAATACTACCCGCCAGACTTCGACCCGGCTAAAATACCCAAACTCAAGCTCCCTAAAGACAGGCAGTATGTGGTCCGGCTGATGGCTCCCTTCAATATGAGGTGTAAGACTTGTGGGGAGTACATTTACAAGGGGAAGAAGTTCAACGCCCGTAAGGAGACTGTGATGAATGAGCTCTACATGGGACTGCCCATCTTCCGCTTCTACATCAAGTGTACACGATGCCTGGCCGAGATCACCTTTAAGTGTGTGTTGTCTACAGACTGATCCGGAGAACACAGACTATGCCATGGAACACGGTGCCACAAGGAACTTCCAGGCGGAGAAACttctagaggaggaagagaagaagataactaaggacagagaggaggaagagttgaACAACCCAATGAAGGTGTTGGAGAACCGTACGCGGGACTCTAAGATGGAGATGGAGGTTCTGGAGAATCTTCAGGAGCTCAAGGAGTTGAACCAGAGACAGGCTTCGGTGGACTTCGAAGGAATGCTGGGAACATACAAAGAGCTGGAGCAGAGGACCAAAgagcaggagaaggaggaggacgaGAGGGAGACACGGGAGATGCTAGAGAGAGCTCTAGTGAAGAGGTTAAGAGACTCCGACTCTGACTCAGACCAGGAGAGCAGCAGTAGACCAAAGAAACCCAGcacagacagacctactgacATCCTCaccacagacagactcactgacccacagGGCCTGTCAGTGGGGGGGGTGAAGAAGGCCAAGGTGGAGAGCTGGGAGAGAAGTGTGGGGGGGATGGGAGGTGGAGGGGCACTGGGATCACTGGTGGTGAGAAAGAAACCAGCGACCTCTGTCCCTAAACCTGATACCACAGTAACTCCTGCAGGCTCTAACACACAGACAGTTTCAAAGGCAGCTGCTATTGTACCGGCGGCTACTAAGCCAATCACAGCACAGAATGGGTCGTCGTCGCTCAGCCTCCTGGGGGCATATTCCGACAGTGATGACAGCAACAACAGTGAATGAGAGAAAGGCTGGCGACGCTTTGGCTAATCAGAAGGCTCAGTCTGTCTGAACTTCGTGATGTGGAAATGTGTTGATATGATGTTGGGCCATTCACCTGTTCCACACAACCCAGAAAGGTTTTGGATTTTCAAGATCACAACACAAGGATGGTTATTAGGTGTAACAAAGGGGTAAGCAATTTGATGCCTGTGATGATTTAAAACTGCTGTAGTTGTTTTGGAGTAAATAGTTAGCGGCCTGAAGTTTATCATCCTGCTTTGTGACCCTTACCCCCAATGTAATTAGTTTTCACCTGTGAttttggaaaatatattttgaaatgtTCATCTACCAACTACCCTCCAACTTTGTAAAGGTGTAAGTCATGTTTTGACTTTTcattaaatacttattttctctTGTGCCCTA
>XM_021611067.2
GAAGTGATTTTCTGCTCTTCTCAGAGATCGCATTACAGCAAGCTAGCTGTATGTAAGCTATATTTAGCTAACATTATCACAGTTTATCCTTCCATTTCGTCGCTAAAGTTAGGTTTTATTTCACATTAAGAATGTCAGAAAGAAAAGTTTTAAACAAATACTACCCGCCAGACTTCGACCCGGCTAAAATACCCAAACTCAAGCTCCCTAAAGACAGGCAGTATGTGGTCCGGCTGATGGCTCCCTTCAATATGAGGTGTAAGACTTGTGGGGAGTACATTTACAAGGGGAAGAAGTTCAACGCCCGTAAGGAGACTGTGATGAATGAGCTCTACATGGGACTGCCCATCTTCCGCTTCTACATCAAGTGTACACGATGCCTGGCCGAGATCACCTTTAAGACTGATCCGGAGAACACAGACTATGCCATGGAACACGGTGCCACAAGGAACTTCCAGGCGGAGAAACttctagaggaggaagagaagaagataactaaggacagagaggaggaagagttgaACAACCCAATGAAGGTGTTGGAGAACCGTACGCGGGACTCTAAGATGGAGATGGAGGTTCTGGAGAATCTTCAGGAGCTCAAGGAGTTGAACCAGAGACAGGCTTCGGTGGACTTCGAAGGAATGCTGGGAACATACAAAGAGCTGGAGCAGAGGACCAAAgagcaggagaaggaggaggacgaGAGGGAGACACGGGAGATGCTAGAGAGAGCTCTAGTGAAGAGGTTAAGAGACTCCGACTCTGACTCAGACCAGGAGAGCAGCAGTAGACCAAAGAAACCCAGcacagacagacctactgacATCCTCaccacagacagactcactgacccacagGGCCTGTCAGTGGGGGGGGTGAAGAAGGCCAAGGTGGAGAGCTGGGAGAGAAGTGTGGGGGGGATGGGAGGTGGAGGGGCACTGGGATCACTGGTGGTGAGAAAGAAACCAGCGACCTCTGTCCCTAAACCTGATACCACAGTAACTCCTGCAGGCTCTAACACACAGACAGTTTCAAAGGCAGCTGCTATTGTACCGGCGGCTACTAAGCCAATCACAGCACAGAATGGGTCGTCGTCGCTCAGCCTCCTGGGGGCATATTCCGACAGTGATGACAGCAACAACAGTGAATGAGAGAAAGGCTGGCGACGCTTTGGCTAATCAGAAGGCTCAGTCTGTCTGAACTTCGTGATGTGGAAATGTGTTGATATGATGTTGGGCCATTCACCTGTTCCACACAACCCAGAAAGGTTTTGGATTTTCAAGATCACAACACAAGGATGGTTATTAGGTGTAACAAAGGGGTAAGCAATTTGATGCCTGTGATGATTTAAAACTGCTGTAGTTGTTTTGGAGTAAATAGTTAGCGGCCTGAAGTTTATCATCCTGCTTTGTGACCCTTACCCCCAATGTAATTAGTTTTCACCTGTGAttttggaaaatatattttgaaatgtTCATCTACCAACTACCCTCCAACTTTGTAAAGGTGTAAGTCATGTTTTGACTTTTcattaaatacttattttctctTGTGCCCTA
>TU660810
CATTACAGCAAGCTAGCTGTATGTAAGCTATATTTAGCTAACATTATCACAGTTTATCCTTCCATTTCGTCGCTAAAGTTAGGTTTTATTTCACATTAAGAATGTCAGAAAGAAAAGTTTTAAACAAATACTACCCGCCAGACTTCGACCCGGCTAAAATACCCAAACTCAAGCTCCCTAAAGACAGGCAGTATGTGGTCCGGCTGATGGCTCCCTTCAATATGAGGTGTAAGACTTGTGGGGAGTACATTTACAAGGGGAAGAAGTTCAACGCCCGTAAGGAGACTGTGATGAATGAGCTCTACATGGGACTGCCCATCTTCCGCTTCTACATCAAGTGTACACGATGCCTGGCCGAGATCACCTTTAAGACTGATCCGGAGAACACAGACTATGCCATGGAACACGGTGCCACAAGGAACTTCCAGGCGGAGAAACttctagaggaggaagagaagaagataactaaggacagagaggaggaagagttgaACAACCCAATGAAGGTGTTGGAGAACCGTACGCGGGACTCTAAGATGGAGATGGAGGTTCTGGAGAATCTTCAGGAGCTCAAGGAGTTGAACCAGAGACAGGCTTCGGTGGACTTCGAAGGAATGCTGGGAACATACAAAGAGCTGGAGCAGAGGACCAAAgagcaggagaaggaggaggacgaGAGGGAGACACGGGAGATGCTAGAGAGAGCTCTAGTGAAGAGGTTAAGAGACTCCGACTCTGACTCAGACCAGGAGAGCAGCAGTAGACCAAAGAAACCCAGcacagacagacctactgacATCCTCaccacagacagactcactgacccacaggtaacacacacacacaggcc
>TU660811
CATTACAGCAAGCTAGCTGTATGTAAGCTATATTTAGCTAACATTATCACAGTTTATCCTTCCATTTCGTCGCTAAAGTTAGGTTTTATTTCACATTAAGAATGTCAGAAAGAAAAGTTTTAAACAAATACTACCCGCCAGACTTCGACCCGGCTAAAATACCCAAACTCAAGCTCCCTAAAGACAGGCAGTATGTGGTCCGGCTGATGGCTCCCTTCAATATGAGGTGTAAGACTTGTGGGGAGTACATTTACAAGGGGAAGAAGTTCAACGCCCGTAAGGAGACTGTGATGAATGAGCTCTACATGGGACTGCCCATCTTCCGCTTCTACATCAAGTGTACACGATGCCTGGCCGAGATCACCTTTAAGGTAAATCtgtttctgcgtgtgtgtctgtagaCTGAGACATAAAACATAAACTACGTCTTAGAACAGTTTGTGTACTCGCCCAGTGTGTGTTGTCTACAGACTGATCCGGAGAACACAGACTATGCCATGGAACACGGTGCCACAAGGAACTTCCAGGCGGAGAAACttctagaggaggaagagaagaagataactaaggacagagaggaggaagagttgaACAACCCAATGAAGGTGTTGGAGAACCGTACGCGGGACTCTAAGATGGAGATGGAGGTTCTGGAGAATCTTCAGGAGCTCAAGGAGTTGAACCAGAGACAGGCTTCGGTGGACTTCGAAGGAATGCTGGGAACATACAAAGAGCTGGAGCAGAGGACCAAAgagcaggagaaggaggaggacgaGAGGGAGACACGGGAGATGCTAGAGAGAGCTCTAGTGAAGAGGTTAAGAGACTCCGACTCTGACTCAGACCAGGAGAGCAGCAGTAGACCAAAGAAACCCAGcacagacagacctactgacATCCTCaccacagacagactcactgacccacaggtaacacacacacacaggcc

Function

NR:

description
coiled-coil domain-containing protein 94-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611068.2 False 1569 mRNA 0.47 8 16316980 16320785
XM_021611067.2 False 1562 mRNA 0.47 8 16316980 16320794
TU660810 False 850 TUCP 0.48 6 16318767 16320764
TU660811 True 949 TUCP 0.47 5 16318767 16320764

Neighbor

gene id symbol gene type direction distance location
LOC110528880 LOC106575386 coding downstream 5367 16305681 ~ 16311613 (-)
LOC110528918 thegl coding downstream 11416 16301717 ~ 16305564 (-)
LOC110528892 LOC106574497 coding downstream 17069 16284327 ~ 16299911 (-)
pdcd10b LOC106574489 coding downstream 124100 16179904 ~ 16192880 (-)
LOC110528861 LOC106575437 coding downstream 200478 16098139 ~ 16116502 (-)
LOC110528901 LOC106575418 coding upstream 332 16321126 ~ 16326569 (-)
LOC118965264 LOC106575381 coding upstream 6324 16327118 ~ 16333701 (-)
LOC118965347 LOC106574589 coding upstream 80325 16401119 ~ 16406055 (-)
LOC110528876 LOC106574510 coding upstream 117858 16438652 ~ 16446786 (-)
LOC110528867 LOC106575374 coding upstream 239136 16559930 ~ 16635251 (-)
G579129 NA non-coding downstream 48333 16267497 ~ 16268647 (-)
G579135 LOC105019863 non-coding downstream 63390 16252983 ~ 16253590 (-)
G579179 NA non-coding downstream 93561 16223214 ~ 16223419 (-)
G579177 NA non-coding downstream 101136 16215591 ~ 16215844 (-)
G579146 NA non-coding downstream 104681 16211609 ~ 16212299 (-)
G579221 NA non-coding upstream 29497 16350291 ~ 16397790 (-)
G579235 NA non-coding upstream 32354 16353148 ~ 16355245 (-)
G579272 NA non-coding upstream 131285 16452079 ~ 16452944 (-)
G579273 NA non-coding upstream 132881 16453675 ~ 16453993 (-)
G579125 LOC106574487 other downstream 186663 16129493 ~ 16130317 (-)
G579102 NA other downstream 243834 16072869 ~ 16073146 (-)
G579028 NA other downstream 353437 15897176 ~ 15963543 (-)
LOC110495701 ghsr other downstream 487022 15827007 ~ 15830774 (-)
G578601 NA other downstream 690281 15626086 ~ 15626699 (-)
G579278 NA other upstream 144148 16464942 ~ 16465534 (-)
LOC110527396 LOC106574529 other upstream 476886 16797680 ~ 16800686 (-)
G580487 NA other upstream 1077063 17397857 ~ 17400536 (-)
G581089 LOC106575297 other upstream 1722133 18042927 ~ 18043380 (-)

Expression


Co-expression Network