LOC110528901 (LOC106575418)


Basic Information

Item Value
gene id LOC110528901
gene name LOC106575418
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16321126 ~ 16326569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611082.2
CCCCCAGACACACACCCCCAGACACACATTCCCCCAGACACACATTCCCCCAGACACACAGCTGTGTTCCTCTATGCACTTATAGCCTGTCATGTTTCTGTTACTGATGTTACACTGGGGGAACAGGAACGATGTTCTCTATATGTAATCTATACATGACTCCATTAACCCAGTTTATGGTGATACATAATCAATCGGTAGGAATCCGACTCTGTTTATCCAGCATGTTTAGGGTCAACGGCCGTGTTGTCTGTCTGATGTTGATGACATGGCTGCAGGGTCCCGTTACTGCGGCCTGCGGTTGCCTGTTAATAATTAACCCGTGTTTGTTGGTCAGGGCTCTGCTCACAGTCTTTAgttacctctctctgcctcccagcACCCTTTATCTAAAGATATCCTATACAGTAACTTAAAGCTACACTCAGCAATATGACATCATTATGCCGGTCAGATTTCTCCTTACAGAATCAGCAGCAATGCAAATTAGGGAGAGACAATAGTGGTAGTCTTGGTAAATCTGAATTCTGTTGTTGTTCATGTATGTATGTTAAGCAGGAAGTTGCCCCAATATGTGCGATGATATCATATTGCTGAGTCTCCCTTTGAAGGGTCAGATTTGAAATACCTCCTGCATCACAGTCtgtaccagagagacagagggggcatCTAACGATTGCTGCAGGTGGGCAAAGTGTAGCTAATTGTCTATGCGTGACTAAATGGGTTTAAACCTCGGTCATCTGCGTGCCACAACATTATTAACCAGCTGAGCTAAAGCCTGGAAAAGCTACCGTAAGTCTTCAGTTGCCAGGGAAGTGTACTCATCACATGGACATCGAGTCGCCTCTATGACACATGAACTCTAGGAAGAGAAGTGAGATGGTGATTCAGGTGTTCCCAGGGCTGCAGAATGGAGATAACGTTTCCTCAGCTTGTAAAGACCATCTATAATTCAGCCTATGAGGCTGTGTTTTTCCTGAAGAGGCTGGATGGTGCCGGGAGTGAATCAATGACAGAACAGCAAACAGtaaagggaagagaaggaagaagagaggaaagagagagagagagagatctgtgtGCACGGAGTAGAGTTGTCAACTTATTCTGGGATACCTTAAGAGTGGTCTAACAAAGTTTTTTTTTCCCGAGTGGTCTAACGAAGTTTTTTTTCCCCGAGTGGTCTAACAAAGTTTTTTTTCGAGTGGTCTAACAAAGTTTTGTCGACAGACGTGAAGCAGGAAGGACCCGTACAGAGGATATGTTTGGACTAACAGGGGATCAAATCAGACCGAATCTCTTCTCCTGCTTGTTATTGTTGTGCTGATTGGTGATTGCATTTCTAGCTGCCAGCGAATCACAGGGCTGCCCACACAGACACAACGGACTGCTCTGGGAGAAGGTCCCTCAGCATTCTCTGAGGGTTGGCAACCCTAGCTGGGAGTGACAGAAGAACAACGtgtaaaagaggaagagaggagggtttggaaaatagagagagagagagagatcgacaaATCATGGAGGTTAAGAGACGTCCGATAATCGCTGGCAGAGAGAAAGGGCCAGGCCCCGGTCGCTATGCTCTCCCTCCAACCATTGGCTACATCAACCATGACCTCACCAAGCCCAGTAGCCCCGCCTACACCTTCCACAGACGTATGAGCAGCAACATGGTCTCTGTGGATTGTAGTCCAGGACCCCAGTACCACATCGATGCCAAGATGACCCGGTTCGGCCGCGTCGGTACCCCTTCTTACTCCATGCTAGGCAGGGCAAGACACTCCGCTGAACTCTTCCAGACTCCAGGTCCAGGTGCCTACAGCCCAGAGAAACCTCATCTCAGAACTCCCTCCTACACTATTGGCTCTCGGTCACGCTACCGTATAATGGATTCTGTGCCCGCCCCTAACCGGTACACCCTCCCTAACCTGCTGGGTTCCCAGGTGCCCCACAAGCCGTCCAGTGCCAGCTACAGCTTGGCGGGGCGCAGACAGGTTGGCGCTCCATCAGAAGACCTGTCCATGACCCCTGGACCAGGACGCTACAACAGTACTGACCCCAGCGTCTACCTCACACGACAGCCGTCCTTCTCTATGCAGAGCCGGACTACCCGGGCCAGCGATCAGTCTCAGAAGCCTGGGCCAGGGACCCACAGCCCGGAGAAGGTCCTGCTCCACCTCCCCAGACCTCCTGCCTTCTCCCTGGGCATCAGACACTCAGAGTTCATTACTCCTCTGGTGGTGGTTGTTTCCGACTGATTTTTATTGGAGTTTCACATGGAGTTTGTGGAAATGCTGGAGTCAGTTCTGAGTTAAATACCACTGTGTTGTTTTAATGAGCACATTTAGCACAATGTTGGAAAAGTGCGTCACAAATAGAGTGTTTTTATTATCATTGTTAAGCCAAGTTGTGGATCTATGGGTGTGACCTGTGttgatctgtgtctgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttgttatctcagtgtgtacatgtgtgtgttcagtgtgcaAGCATGGTGACAGTAATAGGTAGGCTCCAGTCACTGCTCTGTCCCAGCCACATCAGTTCCATGGAACACACCTGGCTCGATAAGACCTCTCAGGGGACAGCCCTGGTAGAACTTTCTTGGTGTCCTCAAACGGATCCAactacagagagaaggagagagagaaaaggagccaGAGagctcgagagagagaggggggaggagagtgtctcacacacacacacacacacagacacactataaGAGTCTGCACTCACAGTGATATCATGTGGGGTACTCTTGTTGTCCCAATGGTATCTGACTTGGTACTTCAGGGGGAAGAGGGTGTGGTCGGACCAGGAAGGGGGAGGGTCCCACTTCACTAACAGCTTCAGCTTCCCTGGTACGGCTTGCAAGGTCACATTCACGGGGGGTCTGGCTTCACAGCTGGAGTTTGATACCAAAGACTCTATATTCTGTCCTCCCTGTGTAAATAGTGACTTGGATCAGGCAGACCCACCCCAGCCCTCACATCTTTACCAAACCCAAACTGTGGAGTACAGAGAGGCACACTCTACCTATCCTCACAACTGAAGAGATCAAAACAGAAACTGATGGAGAGGGCTACAGAGTACCAGAACCAACTAGTGGCTCACAGCCTGTCAATAAATCCAGACTGTTCTGCAAGGGAGAAACCATGTCGATGTAAAGACTGTGGTAGAGGCTTCCACAATAATATAGGCTTGACTAATCATATGAGGATACACACAAGGGAAAAAACGTGTAGCTGTGAAGACTGGCAAATGTTTCAATAACAAAGGAATCTTAAATTGGCCATGCAAGatctcacacaggggagaaatctTATTGGTGCAAAGACTGTAGCAAATCGTTTGGCAACAAAGGAAACTTGACCATGCATATAAAAAATAGACACGGGTCTGGAGAGGAGAAGTCTTATCAGTGCAAAGACTGTGGCAAATACTTTAACAAGAAGGCAAAATTTACTAGACATTAGAAATGACATGCAGCGAAAATTAATCGGTGTAAAGACTGTGGCAAATGTTTCAGCACAAAGGTTTACTTAATCAGACATACAAAGCTACACTCAGGAGAAAATCCTTATCACTGTAAAGACTGTGGCCAATGTTTCAACCGTAAGGAAAACTTGACCCTCCATACAATATCTCACACGGGAGAAGTCTGACAGTTGTAATGAATGTGGCAAGTGCTTCAACAAGATGAGAAATTTGACTGTGCACATGAGatctcacacaggggagaaatcatATCAGTGCAGAGACTGACAAATGTTTTCCTTATAGGACAGGCTTGATAATGCATACCATGATACACAGAGGGGAGAAATCATTTCGCTGTAATGACTGTGGCAAATGCTTCAGACAGACAGCAACTCTGGGAAGACATATTAAAGGTTGTCACAGCAAGTAGAGAAAATGTTTTAGCTGTAAGGGTCACTTGACTGACCGTACAGTATCTCACACAGGGGTGAAATCATATGGCTGCATAGTCTGTGGATAGTGCTTGAATCACAGTGGGCTCTTCCGGGCTccagagtggtgcagtggtctaaggccctgcatctcatgcttgtcactacagacactctggttcaattccaggctgttaCACGACTGGCTGTGATTGCGAGTCCCAGATTTGGCCAGTgtatgctgtcattgtaaataataatttgttcataactgaagtttaaataaaaaataaaaaaatgtaaataaaattgACCAAGCATATGATGTTAAATACAGGAAATGAATTGtattgctgtaaaaaaaaaaaaacactctggCAAATGTTTCAGTTGCTCATTAGCTTTCAGGTATCCTGTATGAAATAAAAGCCTTATCACAATGAGCCATTTAAAAGATCTTCAGGTCTGTTTTTATTCACGCTATAAACAACATTTATATTGTCGCAATCCTAGCTAATGAGCCACCTTACAGTTCCCACCAAATAGGTTAACCCTGTTGGAAAAATGCAGTAGCGTGATTGCCTTT

Function

NR:

description
outer dense fiber protein 3-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611082.2 True 4572 mRNA 0.47 6 16321126 16326569

Neighbor

gene id symbol gene type direction distance location
LOC110528887 LOC106574501 coding downstream 332 16316980 ~ 16320794 (-)
LOC110528880 LOC106575386 coding downstream 9513 16305681 ~ 16311613 (-)
LOC110528918 thegl coding downstream 15562 16301717 ~ 16305564 (-)
LOC110528892 LOC106574497 coding downstream 21215 16284327 ~ 16299911 (-)
pdcd10b LOC106574489 coding downstream 128246 16179904 ~ 16192880 (-)
LOC118965264 LOC106575381 coding upstream 549 16327118 ~ 16333701 (-)
LOC118965347 LOC106574589 coding upstream 74550 16401119 ~ 16406055 (-)
LOC110528876 LOC106574510 coding upstream 112083 16438652 ~ 16446786 (-)
LOC110528867 LOC106575374 coding upstream 233361 16559930 ~ 16635251 (-)
LOC118936279 LOC106575378 coding upstream 257935 16584504 ~ 16587496 (-)
G579129 NA non-coding downstream 52479 16267497 ~ 16268647 (-)
G579135 LOC105019863 non-coding downstream 67536 16252983 ~ 16253590 (-)
G579179 NA non-coding downstream 97707 16223214 ~ 16223419 (-)
G579177 NA non-coding downstream 105282 16215591 ~ 16215844 (-)
G579146 NA non-coding downstream 108827 16211609 ~ 16212299 (-)
G579221 NA non-coding upstream 23722 16350291 ~ 16397790 (-)
G579235 NA non-coding upstream 26579 16353148 ~ 16355245 (-)
G579272 NA non-coding upstream 125510 16452079 ~ 16452944 (-)
G579273 NA non-coding upstream 127106 16453675 ~ 16453993 (-)
G579125 LOC106574487 other downstream 190809 16129493 ~ 16130317 (-)
G579102 NA other downstream 247980 16072869 ~ 16073146 (-)
G579028 NA other downstream 357583 15897176 ~ 15963543 (-)
LOC110495701 ghsr other downstream 491168 15827007 ~ 15830774 (-)
G579278 NA other upstream 138373 16464942 ~ 16465534 (-)
LOC110527396 LOC106574529 other upstream 471111 16797680 ~ 16800686 (-)
G580487 NA other upstream 1071288 17397857 ~ 17400536 (-)
G581089 LOC106575297 other upstream 1716358 18042927 ~ 18043380 (-)

Expression

LOC110528901(LOC106575418) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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LOC110528901(LOC106575418) Expression in each Bioproject

Bar chart with 20 bars.
LOC110528901(LOC106575418) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network