d2hgdh (LOC106575380)


Basic Information

Item Value
gene id d2hgdh
gene name LOC106575380
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16431284 ~ 16435714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611046.2
CTTGTTCTTACGTACTAGGTTCCTAGCTAGCTGTCCCGGATGTAAACAATATATTGACCACAACAATCTTGACGTTGTAGTTTAATCtgcccttgaactttgtgacagATAGCTATATTTGCGACATTATACGATATTAATAGAGACACTTGCATCCAACAACGTTCCCCGATTGGTTGGTAGCAAACGTTATACGAAGTAACGTTAACGTTTGCTAGCTATAGCCACATCTTGTATTTTTCGGTGGTTGACGTGTAAATTTGCAGTGCTGTTGCTTTCAAGGAAAACGTCGTCCATCTAATGAGAATGGTGCACATTCTAAGAATCTAAGAAAAGCACAAACACTACTGAACTACAGTGACAGGCATCCGCTCTCTCCCCAGCCATGGCTGGTCTCTTCCACAGAAGGTTGCGTCTGAGGACTGCTCTCAGGTGGATGAGTCCACTCAGCACTGCCTCACCTCCAGCCGTAGTCAGAACTTTACCCCCAGGCTTTAGCAGCGGCCTGCTCCAGACACCCAGGCCTGTGTCTTGTGGCGTCCGCTGTCGGGAGCTCCATGCTGGGGAAGAGAGACCCACCCCGTCACCCACAGCTGCCCCAGAGAGGAGGCCTTTCTCCAGGGTAACTCCAGAGGACATGGCCTTCTTCAGCAAGATAATACCAGGCAGGACCATCACTGACCCAGATATACTAGAGGCCAGTAATATGGACTGGCTCAAGTCAGTGAGagGTTTCAGTGAGGTTCTGCTGAGGCCCCAGACTACAGAGGAAGTTTCTCAGATCCTTGGGTACTGTAACAGTCGTAACCTGGCAGTGAGTCCTCAGGGTGGTAACACAGGGCTGGTGGGAGGCAGTGTTCCTGTCTATGATGAGATcatcctctctaccgctctcatGAACAACATCCTCAACTTCGACTCTGTCTCCGGTATTCTGTCGTGCCAAGCAGGTTGTGTGTTGGAGAGCCTGTCTCTTTACCTAGAGGACAAGGACTACATCATGCCTCTGGACCTGGGGGCAAAGGGAAGCTGCCATATAGGAGGCAACGTAGCCACTAACGCTGGAGGGCTGAGGCTGCTACGCTACGGATCCCTACGAGGGACAGTATTAGGACTAGAGGTGGTGCTAGCAGACGGGAGGGTCCTGGACTGCCTAGCCACCCTGAGGAAGGACAACACAGGATATGACCTCAAACAGCTGTTCATCGGGTCAGAGGGCACACTGGGGGTCATCACCGCCGTAACCATCCTGTGTCCACGGAAACCTAAAGCCGTCAACGTGGCCTTCCTGGgctgtGAGAGTTTTGAGCAGCTGCTCCAGACCTTCCAGCTGTGTAGAGGCATGCTGGGAGAGATCCTCTCAGCCTTTGAGTTCCTGGACAGAGAGTGTATGAGACTGCTGAACACACACCTGAAACTGGCTAACCCcatcacagACTGTCCGTTCTACATCGTCATAGAAACGTCCGGCTCTAACCCCACCCACGATGAGGAGAAGTTGCACCAGTTTCTGGAGGAGGCCATGACATCATCCCAGGTTATCGACGGGACCGTAGCAACGGAGGAGGCCAAAATCAAGGCTCTCTGGTCACTGCGTGAGCGGGTAACAGAGGCTTTAACTCATGATGGTTTCACATATAAATACGACATCTCACTTCCTGTGGAACGGATCTACCAGCTGGTCACAGATATGAGAGAACACCTGGGAGACAGGGCCAAGAGTGTGGTGGGATACGGACACGTTgGTGATGGTAACCTCCACCTGAACATCACCTCTCCTACCAAAGACCCCAACCTCTTGGCATCCATCGAACCCTTTGTCTATGAGTGGACGGCCCGTTTCCAGGGCAGCATCAGCGCAGAGCACGGCCTGGGCCTGAAGAAGAGGAACTATATTTACTACAGTAAAGCCAGCCTGGCTGTCGCTCTGATGGGGAACATTAAGATCATGTTAGACCCCAAAGGCATTCTCAACCCGTATAAGACCCTGCCGGACGACCTGCAATGACCATATTGCTCCTTCCCTGATTAACTTAACTTAAACACCTGACCTGACCTTCAGTCAACTCTCATAAGACACTACCAGTTGACCTTTCACCCTGCACGACCATACCCGATGAACTCAATGAACCCTGACCCAAACCCCCCTCCAGACTACAGACCACCTCCACTGCTGACACCAGGGCCCAGTTTCACAAAACCTTCTTAACAAGAAATGTCTTACTTTTTTGCAtaagaagtgttttgtgaatctgggcccaggTCTCTGGTAGGGTGTTATTGTTGTGTAAAGGTACTGTAAGGCTTGTCTAGGCTAGGATTCAATCTGATCTCACTGTCGGCAGTGCacgttttaaaggcaatgtttacGAGTTCACAGAGATCACGTTCACAGTATACCCTGCATAGGTCtgctcaatcggaaatgacctttagGTGGTGCATTGTCCAAATCTGCGATCGGATTGAATCCCGGCCCTAGTGAACTACCTCTGATACTCAACTCTACCCTGCACTGATGAGGCCACAGTAGACCTGTCTGATAACCGTGGCCATAGTTCTCTCATTGTACAAGTGTCTGATCAACTTCTAATGTAAGTATAATCTGTGTACATTCATTGTAAATAGAGCAGATTATATTTTTTACCTAATCAGTTTATTATTTTACCACCAGAATTGAAGACAGCAGATATTGTTTTAttacatgtaaaatatatatatatttaaaaaatgtacagcAACAACATAAGCTAATTTTGTGAATGAATACAGAATCTCTAAAA
>XM_036982781.1
TAGCAGCGGCCTGCTCCAGACACCCAGGCCTGTGTCTTGTGGCGTCCGCTGTCGGGAGCTCCATGCTGGGGAAGAGAGACCCACCCCGTCACCCACAGCTGCCCCAGAGAGGAGGCCTTTCTCCAGGGTTTCAGTGAGGTTCTGCTGAGGCCCCAGACTACAGAGGAAGTTTCTCAGATCCTTGGGTACTGTAACAGTCGTAACCTGGCAGTGAGTCCTCAGGGTGGTAACACAGGGCTGGTGGGAGGCAGTGTTCCTGTCTATGATGAGATcatcctctctaccgctctcatGAACAACATCCTCAACTTCGACTCTGTCTCCGGTATTCTGTCGTGCCAAGCAGGTTGTGTGTTGGAGAGCCTGTCTCTTTACCTAGAGGACAAGGACTACATCATGCCTCTGGACCTGGGGGCAAAGGGAAGCTGCCATATAGGAGGCAACGTAGCCACTAACGCTGGAGGGCTGAGGCTGCTACGCTACGGATCCCTACGAGGGACAGTATTAGGACTAGAGGTGGTGCTAGCAGACGGGAGGGTCCTGGACTGCCTAGCCACCCTGAGGAAGGACAACACAGGATATGACCTCAAACAGCTGTTCATCGGGTCAGAGGGCACACTGGGGGTCATCACCGCCGTAACCATCCTGTGTCCACGGAAACCTAAAGCCGTCAACGTGGCCTTCCTGGgctgtGAGAGTTTTGAGCAGCTGCTCCAGACCTTCCAGCTGTGTAGAGGCATGCTGGGAGAGATCCTCTCAGCCTTTGAGTTCCTGGACAGAGAGTGTATGAGACTGCTGAACACACACCTGAAACTGGCTAACCCcatcacagACTGTCCGTTCTACATCGTCATAGAAACGTCCGGCTCTAACCCCACCCACGATGAGGAGAAGTTGCACCAGTTTCTGGAGGAGGCCATGACATCATCCCAGGTTATCGACGGGACCGTAGCAACGGAGGAGGCCAAAATCAAGGCTCTCTGGTCACTGCGTGAGCGGGTAACAGAGGCTTTAACTCATGATGGTTTCACATATAAATACGACATCTCACTTCCTGTGGAACGGATCTACCAGCTGGTCACAGATATGAGAGAACACCTGGGAGACAGGGCCAAGAGTGTGGTGGGATACGGACACGTTgGTGATGGTAACCTCCACCTGAACATCACCTCTCCTACCAAAGACCCCAACCTCTTGGCATCCATCGAACCCTTTGTCTATGAGTGGACGGCCCGTTTCCAGGGCAGCATCAGCGCAGAGCACGGCCTGGGCCTGAAGAAGAGGAACTATATTTACTACAGTAAAGCCAGCCTGGCTGTCGCTCTGATGGGGAACATTAAGATCATGTTAGACCCCAAAGGCATTCTCAACCCGTATAAGACCCTGCCGGACGACCTGCAATGACCATATTGCTCCTTCCCTGATTAACTTAACTTAAACACCTGACCTGACCTTCAGTCAACTCTCATAAGACACTACCAGTTGACCTTTCACCCTGCACGACCATACCCGATGAACTCAATGAACCCTGACCCAAACCCCCCTCCAGACTACAGACCACCTCCACTGCTGACACCAGGGCCCAGTTTCACAAAACCTTCTTAACAAGAAATGTCTTACTTTTTTGCAtaagaagtgttttgtgaatctgggcccaggTCTCTGGTAGGGTGTTATTGTTGTGTAAAGGTACTGTAAGGCTTGTCTAGGCTAGGATTCAATCTGATCTCACTGTCGGCAGTGCacgttttaaaggcaatgtttacGAGTTCACAGAGATCACGTTCACAGTATACCCTGCATAGGTCtgctcaatcggaaatgacctttagGTGGTGCATTGTCCAAATCTGCGATCGGATTGAATCCCGGCCCTAGTGAACTACCTCTGATACTCAACTCTACCCTGCACTGATGAGGCCACAGTAGACCTGTCTGATAACCGTGGCCATAGTTCTCTCATTGTACAAGTGTCTGATCAACTTCTAATGTAAGTATAATCTGTGTACATTCATTGTAAATAGAGCAGATTATATTTTTTACCTAATCAGTTTATTATTTTACCACCAGAATTGAAGACAGCAGATATTGTTTTAttacatgtaaaatatatatatatttaaaaaatgtacagcAACAACATAAGCTAATTTTGTGAATGAATACAGAATCTCTAAAA
>XM_036982782.1
TAGCAGCGGCCTGCTCCAGACACCCAGGCCTGTGTCTTGTGGCGTCCGCTGTCGGGAGCTCCATGCTGGGGAAGAGAGACCCACCCCGTCACCCACAGCTGCCCCAGAGAGGAGGCCTTTCTCCAGGGTTTCAGTGAGGTTCTGCTGAGGCCCCAGACTACAGAGGAAGTTTCTCAGATCCTTGGGTATTATTCTCCAGTCTTCTAGTGTACTGTAACAGTCGTAACCTGGCAGTGAGTCCTCAGGGTGGTAACACAGGGCTGGTGGGAGGCAGTGTTCCTGTCTATGATGAGATcatcctctctaccgctctcatGAACAACATCCTCAACTTCGACTCTGTCTCCGGTATTCTGTCGTGCCAAGCAGGTTGTGTGTTGGAGAGCCTGTCTCTTTACCTAGAGGACAAGGACTACATCATGCCTCTGGACCTGGGGGCAAAGGGAAGCTGCCATATAGGAGGCAACGTAGCCACTAACGCTGGAGGGCTGAGGCTGCTACGCTACGGATCCCTACGAGGGACAGTATTAGGACTAGAGGTGGTGCTAGCAGACGGGAGGGTCCTGGACTGCCTAGCCACCCTGAGGAAGGACAACACAGGATATGACCTCAAACAGCTGTTCATCGGGTCAGAGGGCACACTGGGGGTCATCACCGCCGTAACCATCCTGTGTCCACGGAAACCTAAAGCCGTCAACGTGGCCTTCCTGGgctgtGAGAGTTTTGAGCAGCTGCTCCAGACCTTCCAGCTGTGTAGAGGCATGCTGGGAGAGATCCTCTCAGCCTTTGAGTTCCTGGACAGAGAGTGTATGAGACTGCTGAACACACACCTGAAACTGGCTAACCCcatcacagACTGTCCGTTCTACATCGTCATAGAAACGTCCGGCTCTAACCCCACCCACGATGAGGAGAAGTTGCACCAGTTTCTGGAGGAGGCCATGACATCATCCCAGGTTATCGACGGGACCGTAGCAACGGAGGAGGCCAAAATCAAGGCTCTCTGGTCACTGCGTGAGCGGGTAACAGAGGCTTTAACTCATGATGGTTTCACATATAAATACGACATCTCACTTCCTGTGGAACGGATCTACCAGCTGGTCACAGATATGAGAGAACACCTGGGAGACAGGGCCAAGAGTGTGGTGGGATACGGACACGTTgGTGATGGTAACCTCCACCTGAACATCACCTCTCCTACCAAAGACCCCAACCTCTTGGCATCCATCGAACCCTTTGTCTATGAGTGGACGGCCCGTTTCCAGGGCAGCATCAGCGCAGAGCACGGCCTGGGCCTGAAGAAGAGGAACTATATTTACTACAGTAAAGCCAGCCTGGCTGTCGCTCTGATGGGGAACATTAAGATCATGTTAGACCCCAAAGGCATTCTCAACCCGTATAAGACCCTGCCGGACGACCTGCAATGACCATATTGCTCCTTCCCTGATTAACTTAACTTAAACACCTGACCTGACCTTCAGTCAACTCTCATAAGACACTACCAGTTGACCTTTCACCCTGCACGACCATACCCGATGAACTCAATGAACCCTGACCCAAACCCCCCTCCAGACTACAGACCACCTCCACTGCTGACACCAGGGCCCAGTTTCACAAAACCTTCTTAACAAGAAATGTCTTACTTTTTTGCAtaagaagtgttttgtgaatctgggcccaggTCTCTGGTAGGGTGTTATTGTTGTGTAAAGGTACTGTAAGGCTTGTCTAGGCTAGGATTCAATCTGATCTCACTGTCGGCAGTGCacgttttaaaggcaatgtttacGAGTTCACAGAGATCACGTTCACAGTATACCCTGCATAGGTCtgctcaatcggaaatgacctttagGTGGTGCATTGTCCAAATCTGCGATCGGATTGAATCCCGGCCCTAGTGAACTACCTCTGATACTCAACTCTACCCTGCACTGATGAGGCCACAGTAGACCTGTCTGATAACCGTGGCCATAGTTCTCTCATTGTACAAGTGTCTGATCAACTTCTAATGTAAGTATAATCTGTGTACATTCATTGTAAATAGAGCAGATTATATTTTTTACCTAATCAGTTTATTATTTTACCACCAGAATTGAAGACAGCAGATATTGTTTTAttacatgtaaaatatatatatatttaaaaaatgtacagcAACAACATAAGCTAATTTTGTGAATGAATACAGAATCTCTAAAA

Function

NR:

description
D-2-hydroxyglutarate dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K18204 D2HGDH; D-2-hydroxyglutarate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611046.2 False 2783 mRNA 0.49 10 16431284 16435714
XM_036982781.1 False 2179 mRNA 0.50 9 16432238 16435714
XM_036982782.1 True 2202 mRNA 0.50 9 16432238 16435714

Neighbor

gene id symbol gene type direction distance location
LOC118965265 LOC106575416 coding upstream 2906 16425706 ~ 16428378 (+)
LOC110528784 LOC106574508 coding upstream 33442 16378356 ~ 16397842 (+)
LOC110528903 LOC106574506 coding upstream 75985 16344292 ~ 16356805 (+)
LOC110528905 LOC106574496 coding upstream 152094 16269200 ~ 16279190 (+)
LOC110528895 LOC106574495 coding upstream 162620 16229804 ~ 16268664 (+)
LOC110528885 c1ql2 coding downstream 10674 16446388 ~ 16452050 (+)
LOC110528786 omp-1 coding downstream 21998 16457220 ~ 16463699 (+)
LOC110528787 LOC106575379 coding downstream 74723 16510437 ~ 16537956 (+)
LOC110528859 LOC106575376 coding downstream 110601 16544860 ~ 16559294 (+)
LOC110528883 ola1 coding downstream 219372 16655086 ~ 16663049 (+)
G578977 LOC106575417 non-coding upstream 32186 16398697 ~ 16399098 (+)
G578936 LOC106574500 non-coding upstream 119703 16310221 ~ 16311581 (+)
G578934 LOC106575386 non-coding upstream 121906 16305696 ~ 16309378 (+)
G578920 NA non-coding upstream 150012 16281042 ~ 16281272 (+)
G579000 NA non-coding downstream 28526 16464240 ~ 16464792 (+)
G579001 NA non-coding downstream 29238 16464952 ~ 16465550 (+)
G579020 NA non-coding downstream 73879 16509593 ~ 16509824 (+)
G579319 NA non-coding downstream 106127 16541841 ~ 16542062 (+)
LOC110528915 LOC106574584 other upstream 383277 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 426291 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 932698 15492870 ~ 15498827 (+)
G578389 NA other upstream 966919 15462245 ~ 15464365 (+)
G578031 NA other upstream 1175077 15255171 ~ 15256207 (+)
G579566 NA other downstream 382828 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 606695 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 898010 17333699 ~ 17336419 (+)
G580179 NA other downstream 963079 17398793 ~ 17400533 (+)

Expression


Co-expression Network