LOC110528786 (omp-1)


Basic Information

Item Value
gene id LOC110528786
gene name omp-1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16457220 ~ 16463699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982785.1
AGAACAAGGGTATAAGAGGGGGTCGATGTGAAAGCATTTTTTCCCATAAAACCTCAGTTTACTGGTTTCTCCACTGTAGCGTTCCATTGGAGTGTGTCTCGTGTGTGAGGGGAGATCTCGTCTTcacagtgtgtgtttgagagggAGAAGATTTCTCAGATTTTGTCAGTCGACATGATTCATCGGGACAGAAGGCTGGCCAtgactcttctcctcttctcattcATCTCTTTCTCCACGCATTTCCAACAGGTGCGAAGGTACAATGCTTGTACCTGTTTTTCTCCAGTGAGAATAAAGTTGAACACAGTTCAACATTCCTTGTCTTTCCCAGTCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGTGTCCGTGGCCAGAGTCCAACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGACATCTACACAGCCGGCTGGTGCTTTGGACTAGAACTGGCTGCTGGAGAGTCTTACAACGGAGTGGATGGTATCAGCTACTATGTTGTAGCTCTGGCTCGTCGCTCCTCCAGTGACCTGTCCCTGTTGGAGATGCATGAACGCAGCTCCTGTCACCCAGGGATCCGTACCACGGTGGGCTGGACTGTTCCTATTGGCTTCCTGGTCAACACCTCACAGATCAGTGTCGATGAACAATGCAACTTTCCTAAAGCGGTGGGGGACTTCTTTGGCAACAGCTGTGTACCAGGAGTAAAGGACAGAGAACACGACCCCAGAGGAAGCAACCCTAAGAACCTGTGTGAAGCCTGCATAGGAGATGACAACGAGAGACATATATGTGTTAACAATCACCGAGAGAGACACTATGGAGAGGCTGGGGCActgagGTGTGTGGCTGAGAATTTGGGCGATGTGGCATTTGTCAAACACACCACCATTTCTGACAACATGGATGGCAACAATATGGAATCATGGGCCATGGACCTGGAACTGGAGGACCTGAAGCTGCTGTGCCCGGATGGCAGTGAGGCCGGGCCGTTTGACCATGAGACGTGTCACCTGGCTGTGGTACCAGCTAACGCTGTGGTGGTACGCCTAGAGGACAAGTGTAGAGTCTGGAAATACCTGGAACgcctacagaATGTGTTTGGGAACACCACCATGTTCAGCTCAGTAGGCTACGCCCAATCAGATCTCCTGTTTTCTGACTCCACCCACCACCTGCTCAGGGTTGTGGGTAGTTACACTTCCTGGTTGGGTCCCACATACACCACTGTCCTGCAGGCCTTCGAGTGTGAAAGTTTGTGCTGATCCTTCTAGAAAGAAATCAACCAgcatcctctccatctctcccctcactATCTCTCCacatctttctttccctccctccctccatatcttatcccccctccctccatgcctcctcCCTCcatgccccctccctccctccatg
>TU660551
ctacctctctctaccctctctctctcttcatctaccctctctcccctcctctacctctcctcttccctccttctcttcaccttctcttctccctctctctctcgctctccgtcacctcccctcctcttcctctctctcttgttctcttcctctcctcttccctccttctcttttccctcccctctctctccttcacctcccctcctctacctctctctaccctctctctctttctcttcctctcctctcccctccccttgaatttctcctctcctttccctctctttccccatctcctcccatctctctctctcccctcctctcgctTTCTAAAGCTAAGGGGATAATTGAAAGAGAAATGTTAGACAGCTATCAGGAGATTATCTACCAGGGGTTAGAATTTTTGGAATGGAGGAGAATAATGAAATGTTTTCTTCTTatctgacacccccccccccttcccccacccctctctccgcTTGAGGGTTCCTAAGAACAAGGGTATAAGAGGGGGTCGATGTGAAAGCATTTTTTCCCATAAAACCTCAGTTTACTGGTTTCTCCACTGTAGCGTTCCATTGGAGTGTGTCTCGTGTGTGAGGGGAGATCTCGTCTTcacagtgtgtgtttgagagggAGAAGATTTCTCAGATTTTGTCAGTCGACATGATTCATCGGGACAGAAGGCTGGCCAtgactcttctcctcttctcattcATCTCTTTCTCCAC
>TU660552
GTCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGTGTCCGTGGCCAGAGTCCAACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGACATCTACACAGCCGGCTGGTGCTTTGGACTAGAACTGGCTGCTGGAGAGTCTTACAACGGAGTGGATGGTATCAGCTACTATGTTGTAGCTCTGGCTCGTCGCTCCTCCAGTGACCTGTCCCTGTTGGAGATGCATGAACGCAGCTCCTGTCACCCAGGGATCCGTACCACGGTGGGCTGGACTGTTCCTATTGGCTTCCTGGTCAACACCTCACAGATCAGTGTCGATGAACAATGCAACTTTCCTAAAGCGGTGGGGGACTTCTTTGGCAACAGCTGTGTACCAGGAGTAAAGGACAGAGAACACGACCCCAGAGGAAGCAACCCTAAGAACCTGTGTGAAGCCTGCATAGGAG
>TU660553
GTCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGTGTCCGTGGCCAGAGTCCAACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGACATCTACACAGCCGGCTGGTGCTTTGGACTAGAACTGGCTGCTGGAGAGTCTTACAACGGAGTGGATGGTATCAGCTACTATGTTGTAGCTCTGGCTCGTCGCTCCTCCAGTGACCTGTCCCTGTTGGAGATGCATGAACGCAGCTCCTGTCACCCAGGGATCCGTACCACGGTGGGCTGGACTGTTCCTATTGGCTTCCTGGTCAACACCTCACAGATCAGTGTCGATGAACAATGCAACTTTCCTAAAGgtaagacctgtgtgtgtgtg
>TU660554
gagaggaggagaggaggagaggctggggAACTGacgtagggaggagaggagaggaggagaagctgGGGCActgaggtagggaggagaggaggagaggctggggccctgaggtagggaggagagggagaggaggagaggcgatAGGGATGAGACGAGAGGAGGAAAGGATCTATTTCTCCTTCTTGAAAGTTTCTCAAATCAGTCCATGGGGGCCCCTAACCATCCCACATATTTGATATATTCCAACACCAGTCTACAAATGTAACTAGTCAACGAATCACCAAGcccttgattagttgaatcaggtagaATTGCTGTGGATCCCAGAGGACTGGTTTGAGAAACAGTGTCTTATTTAACTAGCTGTGTTTGACTTGAGGCTTTCTTCCAGGTGTGTGGCTGAGAATTTGGGCGATGTGGCATTTGTCAAACACACCACCATTTCTGACAACATGGATGGCAACAATATGGAATCATGGGCCATGGACCTGGAACTGGAGGACCTGAAGCTGCTGTGCCCGGATGGCAGTGAGGCCGGGCCGTTTGACCATGAGACGTGTCACCTGGCTGTGGTACCAGCTAACGCTGTGGTGGTACGCCTAGAGGACAAGTGTAGAGTCTGGAAATACCTGGAACgcctacagGTTTGTGCTGATCCTTCTAGAAAGAAATCAACCAgcatcctctccatctctcccctcactATCTCTCCacatctttctttccctccctccctccatatcttatcccccctccctccatgcctcctcCCTCcatgccccctccctcc

Function

NR:

description
otolith matrix protein 1 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982785.1 False 1501 mRNA 0.52 9 16457712 16463699
TU660551 False 731 lncRNA 0.50 1 16457220 16457950
TU660552 False 532 TUCP 0.54 5 16458045 16460893
TU660553 False 447 TUCP 0.54 4 16458045 16460674
TU660554 True 790 TUCP 0.52 3 16462427 16463692

Neighbor

gene id symbol gene type direction distance location
LOC110528885 c1ql2 coding upstream 5662 16446388 ~ 16452050 (+)
d2hgdh LOC106575380 coding upstream 21998 16431284 ~ 16435714 (+)
LOC118965265 LOC106575416 coding upstream 29334 16425706 ~ 16428378 (+)
LOC110528784 LOC106574508 coding upstream 59870 16378356 ~ 16397842 (+)
LOC110528903 LOC106574506 coding upstream 102413 16344292 ~ 16356805 (+)
LOC110528787 LOC106575379 coding downstream 46738 16510437 ~ 16537956 (+)
LOC110528859 LOC106575376 coding downstream 82616 16544860 ~ 16559294 (+)
LOC110528883 ola1 coding downstream 191387 16655086 ~ 16663049 (+)
LOC110528869 LOC106574522 coding downstream 199975 16663674 ~ 16671573 (+)
LOC110528893 LOC105019901 coding downstream 219383 16683082 ~ 16691072 (+)
G578977 LOC106575417 non-coding upstream 58614 16398697 ~ 16399098 (+)
G578936 LOC106574500 non-coding upstream 146131 16310221 ~ 16311581 (+)
G578934 LOC106575386 non-coding upstream 148334 16305696 ~ 16309378 (+)
G578920 NA non-coding upstream 176440 16281042 ~ 16281272 (+)
G579000 NA non-coding downstream 541 16464240 ~ 16464792 (+)
G579001 NA non-coding downstream 1253 16464952 ~ 16465550 (+)
G579020 NA non-coding downstream 45894 16509593 ~ 16509824 (+)
G579319 NA non-coding downstream 78142 16541841 ~ 16542062 (+)
G579320 NA non-coding downstream 79304 16543003 ~ 16543433 (+)
LOC110528915 LOC106574584 other upstream 409705 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 452719 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 959126 15492870 ~ 15498827 (+)
G578389 NA other upstream 993347 15462245 ~ 15464365 (+)
G578031 NA other upstream 1201505 15255171 ~ 15256207 (+)
G579566 NA other downstream 354843 16818542 ~ 16819890 (+)
LOC110527403 LOC106574539 other downstream 578710 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 870025 17333699 ~ 17336419 (+)
G580179 NA other downstream 935094 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 1206576 17670275 ~ 17680668 (+)
LOC110528786 omp-1 other downstream 95 16457220 ~ 16463699 (+)

Expression


Co-expression Network