LOC110528788


Basic Information

Item Value
gene id LOC110528788
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16747415 ~ 16763145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982805.1
attattagtcaaggaccgaaatacatttaaaatgtcacaCATAGTTTACATATCAGTTcatacacacaatatctaggACTAATACAAAGTACAGTGCAAATTACAATAtatataacatgtctgtgtctctTCTCAGTCCCCTTTGTGCAGTAAGGTGttcttttatctgtttttttaaacttcTTACCTGTTGTggcagagttccatgtagtcatggttctatttaatactgtgcattttccagcctctgttctggacttggggactagtctatttattgtggtgttgaaaatgCAAACCATGTCATTGAAGTGCACGAAGTCAgtatgctttgtttattggttgtgtggtgcattggcacCGAAACCAGCCCCTCTCACCCAGTACATTttgatcagaattgggctgcctgtgtgaacACAGCCTTTGATTGTCATCTGGTCTTGGGTCTATGTAACTACAGCCGATAGACCAGAGTGGGCCCGAATGGACACGATCATGGCTCTATATAAGCTATAGCCTTCAAACTCAACGCTGGACTTCAAAACCAGTTCcactacttttttttttgttcccctccaatcagggcctgatttagacctgggacaccagacgGGTGTATTTAACTATCAGGTAGAACGGAAAATCAGTAGGCTCCAGACCTCATaaggtaagagttgaatacccctgaccTATGGCATATTTATTTGAAGCTATTAAGGTGAATGTATTGACTTATAGAAGAAGAGCAATTTTTTTTTGTCACTCTGGTATGTTAGGGTGTGGGTCGTGTCTAGCTCGGGTTGTCCTCGGGTCCATTCAGGTATGGGTCGTGTCTAGCTTGGGTTGTCCTCGGGTCCATTCGGGTATGGGTCGTGTCTAGCTCGGATTGTCCTCGGGTCCATTCGGGAATGGGTCGTGTCTAGCTCGGGTTGTCCTCGGGTCCATTCGGGTATGGGTTTTCAGGTCCGGGCACCGATGGACTTACCATTAAACAGAAATAAAAATCTCTGCTTGAggcataaataaataatacaaaaaacagcagtaaggccaaattcaatgtttcatcaaatcatTTTTTTCAAATATTTTTGATACCTACatgggtcctaaaattctaaagtaaatagctaaatgatccttggtatgaccatcttaaaacaattccatatgttagctcaGTAGAAACCTAGCCCCGGGCCCATAGACTCGAGGCGGTTAAAAGGTCATATATTTTTACAGTTAAATTATGTCTTTACtataaatctttttttttaaacgaggAGGGGTGGGGCCTCCAAATGATTAAGTTTGTCCCTGGGTCCAGGTCCAACTTTTTGGACAGGAGAAGACCTCCAATCTCTCCAATAAAGACTCAATTTATAAATTTTCAGCCCAGAGCTTCTCATTCCAGACCCTATTTAGGTGCCAATCTGGTATGATTAAATGACCACCCAAGTTTATACCAATTTCTACCAGTCTGTATGTTGATTGCATATATTACTTTATATTcttatcccaaaccatttcaCTGACCCTTGCTTTAACATTTCTTTAATTACCTTACTGGGTTGTTGTTCAAGAGAAATAGACTGCTTGTGTAGGCTCAGATGGTAAACAATCACCTAGGATCAAGACCAAAACCAGGAAAGGTAACCAAGCAGTAGGCGTGGCTTGGTTGGCATAAACAGTTGTGTCCCTTAGTAACCAGGTAAGTGGTCTCAGTTTGGCGTAGAGACTGAGAGCTGATCGAAAGGTGTGTGAGGTACAGCTAAAGAGCTACAGGTAAATTGGGGACGGGGGAGTGGGGGTGTGTACAGCGGTGACCCTCAGTCActtattgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggacaactTCACAGTGTGGAGAATACAGTACTCTCCGAATGACTAATCTCATGCTTGACCAGATGACCCGACTCAAACTCAGGCTGCTGGAGAAGGTCATTGATTATTTGATTGAGTTTTTAAAGTTTTGGATATCAAATAATCATCTGATCATTTACTTTGATAGACAGAAAGGCCATGTTTTTAACTTATGAGTGAAACTAAAAGTAGTAAAAGAGGCAGTCTTTTCTGATGTTGTGAGTTCTGGCTGCACATGGCCTCGTTGACTGCTGACTACTCCCCTCCTGCTAGTCTTCATGTCCACAGCGACTGGAGAACGAGAGGGACAACAAGGACAGCAGAGCAGAGTCTGCCCTATCCACCAGAGTTTTGATGGACAGGCGGATGCGCTTCACAGTGTGCTTAGACGAAAAAAGGACCTGCTGCAAAGACTGAGGGAGCAGCACATGTTGGAGAACCTGAGCAGACCTTACACCTGGGGTGGGACAGGGAGACGGTACCGCCCAGACCTCCTCCTGACCTTCTGCCTCCTCTTCCGGCCCCCTTCCATATCTACCAGCCTGCCCCTGCACCCCCAGCAAATGTTGCCCCAGCAGCCTACTACCTTCATACAGCAGTTACCACAGCAACAGCCCCTCATACAACAGATGCCCCCTCCTCAGCCAAACCATGCACCACAGTCTGGGAGCATcaaaggtaaacacacacacacaaatgccaaATGCAGCTacttctgtgcgtgtgtgtgcataatGTTAAttttcatgtatgtgtgtgttagacaTGGTGGAGCTGATGTTGATGCAGAatgcacaacatgatgctgaaaGCAATGTCTCCCACGGCCCTATCACCACCTAACCAAGGACAGGTCCgtttcacacacacccacatcatttatgtcaaatcaaatcgtatttatcacaagcgccgaatacaacagttgtagaccttactgtgaaatgcttacttacaagctcttaaccaacaat
>XM_036982806.1
attattagtcaaggaccgaaatacatttaaaatgtcacaCATAGTTTACATATCAGTTcatacacacaatatctaggACTAATACAAAGTACAGTGCAAATTACAATAtatataacatgtctgtgtctctTCTCAGTCCCCTTTGTGCAGTAAGGTGttcttttatctgtttttttaaacttcTTACCTGTTGTggcagagttccatgtagtcatggttctatttaatactgtgcattttccagcctctgttctggacttggggactagtctatttattgtggtgttgaaaatgCAAACCATGTCATTGAAGTGCACGAAGTCAgtatgctttgtttattggttgtgtggtgcattggcacCGAAACCAGCCCCTCTCACCCAGTACATTttgatcagaattgggctgcctgtgtgaacACAGCCTTTGATTGTCATCTGGTCTTGGGTCTATGTAACTACAGCCGATAGACCAGAGTGGGCCCGAATGGACACGATCATGGCTCTATATAAGCTATAGCCTTCAAACTCAACGCTGGACTTCAAAACCAGTTCcactacttttttttttgttcccctccaatcagggcctgatttagacctgggacaccagacgGGTGTATTTAACTATCAGGTAGAACGGAAAATCAGTAGGCTCCAGACCTCATaaggtaagagttgaatacccctgaccTATGGCATATTTATTTGAAGCTATTAAGGTGAATGTATTGACTTATAGAAGAAGAGCAATTTTTTTTTGTCACTCTGGTATGTTAGGGTGTGGGTCGTGTCTAGCTCGGGTTGTCCTCGGGTCCATTCAGGTATGGGTCGTGTCTAGCTTGGGTTGTCCTCGGGTCCATTCGGGTATGGGTCGTGTCTAGCTCGGATTGTCCTCGGGTCCATTCGGGAATGGGTCGTGTCTAGCTCGGGTTGTCCTCGGGTCCATTCGGGTATGGGTTTTCAGGTCCGGGCACCGATGGACTTACCATTAAACAGAAATAAAAATCTCTGCTTGAggcataaataaataatacaaaaaacagcagtaaggccaaattcaatgtttcatcaaatcatTTTTTTCAAATATTTTTGATACCTACatgggtcctaaaattctaaagtaaatagctaaatgatccttggtatgaccatcttaaaacaattccatatgttagctcaGTAGAAACCTAGCCCCGGGCCCATAGACTCGAGGCGGTTAAAAGGTCATATATTTTTACAGTTAAATTATGTCTTTACtataaatctttttttttaaacgaggAGGGGTGGGGCCTCCAAATGATTAAGTTTGTCCCTGGGTCCAGGTCCAACTTTTTGGACAGGAGAAGACCTCCAATCTCTCCAATAAAGACTCAATTTATAAATTTTCAGCCCAGAGCTTCTCATTCCAGACCCTATTTAGGTGCCAATCTGGTATGATTAAATGACCACCCAAGTTTATACCAATTTCTACCAGTCTGTATGTTGATTGCATATATTACTTTATATTcttatcccaaaccatttcaCTGACCCTTGCTTTAACATTTCTTTAATTACCTTACTGGGTTGTTGTTCAAGAGAAATAGACTGCTTGTGTAGGCTCAGATGGTAAACAATCACCTAGGATCAAGACCAAAACCAGGAAAGGTAACCAAGCAGTAGGCGTGGCTTGGTTGGCATAAACAGTTGTGTCCCTTAGTAACCAGGTAAGTGGTCTCAGTTTGGCGTAGAGACTGAGAGCTGATCGAAAGGTGTGTGAGGTACAGCTAAAGAGCTACAGGTAAATTGGGGACGGGGGAGTGGGGGTGTGTACAGCGGTGACCCTCAGTCActtattgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggacaactTCACAGTGTGGAGAATACAGTACTCTCCGAATGACTAATCTCATGCTTGACCAGATGACCCGACTCAAACTCAGGCTGCTGGAGAAGGTCATTGATTATTTGATTGAGTTTTTAAAGTTTTGGATATCAAATAATCATCTGATCATTTACTTTGATAGACAGAAAGGCCATGTTTTTAACTTATGAGTGAAACTAAAAGTAGTAAAAGAGGCAGTCTTTTCTGATGTTGTGAGTTCTGGCTGCACATGGCCTCGTTGACTGCTGACTACTCCCCTCCTGCTAGTCTTCATGTCCACAGCGACTGGAGAACGAGAGGGACAACAAGGACAGCAGAGCAGAGTCTGCCCTATCCACCAGAGTTTTGATGGACAGGCGGATGCGCTTCACAGTGTGCTTAGACGAAAAAAGGACCTGCTGCAAAGACTGAGGGAGCAGCACATGTTGGAGAACCTGAGCAGACCTTACACCTGGGGTGGGACAGGGAGACGGTACCGCCCAGACCTCCTCCTGACCTTCTGCCTCCTCTTCCGGCCCCCTTCCATATCTACCAGCCTGCCCCTGCACCCCCAGCAAATGTTGCCCCAGCAGCCTACTACCTTCATACAGCAGTTACCACAGCAACAGCCCCTCATACAACAGATGCCCCCTCCTCAGCCAAACCATGCACCACAGTCTGGGAGCATcaaagacaTGGTGGAGCTGATGTTGATGCAGAatgcacaacatgatgctgaaaGCAATGTCTCCCACGGCCCTATCACCACCTAACCAAGGACAGGTCCgtttcacacacacccacatcatttatgtcaaatcaaatcgtatttatcacaagcgccgaatacaacagttgtagaccttactgtgaaatgcttacttacaagctcttaaccaacaat

Function

NR:

description
uncharacterized protein C21orf58-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982805.1 False 2872 mRNA 0.44 4 16747415 16763145
XM_036982806.1 True 2787 mRNA 0.44 5 16747415 16763145

Neighbor

gene id symbol gene type direction distance location
LOC110528893 LOC105019901 coding upstream 56343 16683082 ~ 16691072 (+)
LOC118965266 NA coding upstream 59170 16683341 ~ 16688245 (+)
LOC110528869 LOC106574522 coding upstream 75842 16663674 ~ 16671573 (+)
LOC110528883 ola1 coding upstream 84366 16655086 ~ 16663049 (+)
LOC110528859 LOC106575376 coding upstream 188121 16544860 ~ 16559294 (+)
LOC110528796 LOC106574532 coding downstream 143554 16906699 ~ 16920069 (+)
trnak-uuu NA coding downstream 162525 16925670 ~ 16925742 (+)
trnak-uuu-2 NA coding downstream 164071 16927216 ~ 16927288 (+)
trnak-cuu NA coding downstream 167122 16930267 ~ 16930339 (+)
trnan-guu-2 NA coding downstream 167879 16931024 ~ 16931097 (+)
G579531 NA non-coding upstream 4673 16742359 ~ 16742742 (+)
G579530 NA non-coding upstream 5219 16741958 ~ 16742196 (+)
G579527 LOC106575364 non-coding upstream 9265 16737370 ~ 16738150 (+)
G579526 LOC106575364 non-coding upstream 10185 16736893 ~ 16737230 (+)
G579525 LOC106575364 non-coding upstream 11357 16735674 ~ 16736058 (+)
G579510 NA non-coding downstream 306 16763451 ~ 16764608 (+)
G579553 NA non-coding downstream 32174 16795319 ~ 16795544 (+)
G579507 NA non-coding downstream 36271 16799416 ~ 16800614 (+)
G579556 NA non-coding downstream 38638 16801783 ~ 16803359 (+)
G579566 NA non-coding downstream 55397 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 283723 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 699408 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 742422 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1248829 15492870 ~ 15498827 (+)
G578389 NA other upstream 1283050 15462245 ~ 15464365 (+)
LOC110527403 LOC106574539 other downstream 279264 17042409 ~ 17097924 (+)
si:ch211-181l5.2 cl10a other downstream 570579 17333699 ~ 17336419 (+)
G580179 NA other downstream 635648 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 907130 17670275 ~ 17680668 (+)

Expression


Co-expression Network