XLOC_024864 (snx20)



Basic Information


Item Value
gene id XLOC_024864
gene name snx20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 35957603 ~ 35963241 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00048934
AGCAGATTATCCGATGTCTGTGTGCACAGAGATCTAATTTTGCCCAACTTCCTGAGGAAGTGCAGCACTTTACCTTTCACCGCATGGAACTAATGTAATGTATTTCCTTACAGAGAGCTAAAATTATCAGATCTTCATGGAGGAAGAGGAAAAACCACCCAACATCACTGCTAATCACACGGTTTCATCAGCTCCTGAGCATTTATCACCCCACCAGGAAACGTTACAGGGTAATGGAGAGTCTGCAGAGGATGATCTGTGTTTTGGCGCCTCCTGTCTGACCACGGCAGAACTGCAGCAGCACTGGAGAGCCGTCAAGCAGGAGTTCAGGAGCGTTAAACTGCTGTTCGACATCCCCAGCGCCAGAATCATCTCACAAACCATCTCCAAACATGTGGTGTACCAGGTTGTGGTTATTCGCTCGGGTAGTTACGACTGTGAGCGCGTGGCTATCGAGCGCCGCTATTCAGACTTCCTCCACCTCCATCAGGAGCTCCTGTCCGACTTCAGCGAGGAACTTGAGGACGTTGTGTTTCCCAAAAAGAAGATGACCCGAAACTTCTCTGAGGAGATCATCGCTGAGCGTCGCGTAGCTCTGAGAGACTATCTGACCCAGCTCTACTCCCTCCGCTTTGTCAGGAAATCCCAAGCGTTTCAATCCTTCTTCACTCATCAGGAACTGAAATCTGCATATGATCTCCTGAGGGGGGGACGCTTCTCCCGGGCCCTCGAGGGCCTCCAGAAGGTGTTGGTGCTTCAGGAGAAACTCTCCTCTCATGATGCTACGTTAGTGATTCCGACATTGTGCGCCATATTGGTTTGCCAAAGGGATCTAGAGGACTTCGAGGCTGCCTTCGAAACTGGCAGAAAAGCTTTGCCCACAGTGAGGAGATATGAGCTGCGAAAGCATCACGGGCCCCTGCTGGAGGCTCTGGTTGATTTGGGGTTCAGTCTGGAGCTGCCGGTGGCTCAGCTACAGGACGAGCTGATCAGAGTTAATGACTCTCCATGTGGGAAAGAGACACAGATGTCTCTTAAAGAACTGGTGGTGCAAgagtttgtatgattttttttgtgtgactaaaatgatTATGAGGCGAGTttcactgcatttatttaattattttgttgtcAAAATGTACACAAATCTAAATTCTTTAATAACTTACCTCGAGAACCATTGATTTCTTGAATTTATGTAAAGGAAACACTG
>TCONS_00048935
ATGTGTGTGTACCCACCGGCAGCTGCAGAGGATGATCTGTGTTTTGGCGCCTCCTGTCTGACCACGGCAGAACTGCAGCAGCACTGGAGAGCCGTCAAGCAGGAGTTCAGGAGCGTTAAACTGCTGTTCGACATCCCCAGCGCCAGAATCATCTCACAAACCATCTCCAAACATGTGGTGTACCAGGTTGTGGTTATTCGCTCGGGTAGTTACGACTGTGAGCGCGTGGCTATCGAGCGCCGCTATTCAGACTTCCTCCACCTCCATCAGGAGCTCCTGTCCGACTTCAGCGAGGAACTTGAGGACGTTGTGTTTCCCAAAAAGAAGATGACCCGAAACTTCTCTGAGGAGATCATCGCTGAGCGTCGCGTAGCTCTGAGAGACTATCTGACCCAGCTCTACTCCCTCCGCTTTGTCAGGAAATCCCAAGCGTTTCAATCCTTCTTCACTCATCAGGAACTGAAATCTGCATATGATCTCCTGAGGGGGGGACGCTTCTCCCGGGCCCTCGAGGGCCTCCAGAAGGTGTTGGTGCTTCAGGAGAAACTCTCCTCTCATGATGCTACGTTAGTGATTCCGACATTGTGCGCCATATTGGTTTGCCAAAGGGATCTAGAGGACTTCGAGGCTGCCTTCGAAACTGGCAGAAAAGCTTTGCCCACAGTGAGGAGATATGAGCTGCGAAAGCATCACGGGCCCCTGCTGGAGGCTCTGGTTGATTTGGGGTTCAGTCTGGAGCTGCCGGTGGCTCAGCTACAGGACGAGCTGATCAGAGTTAATGACTCTCCATGTGGGAAAGAGACACAGATGTCTCTTAAAGAACTGGTGGTGCAAgagtttgtatga
>TCONS_00048936
CTTCAGTCAGCATGAAAAACAGAAGCAGGAACAGTAAACATGACCTCTTATAGAGACACAAGTGAACTTACACTTTCAACTTCAGCAGATTATCCGATGTCTGTGTGCACAGATTTCCTTACAGAGAGCTAAAATTATCAGATCTTCATGGAGGAAGAGGAAAAACCACCCAACATCACTGCTAATCACACGGTTTCATCAGCTCCTGAGCATTTATCACCCCACCAGGAAACGTTACAGGGTAATGGAGAGTGTAAGTTGATTCTGTATGATCATGAGATCAGATTGTGACGTGATGTCCTCTGGGTGTGTGTTTAACGCATCAGACCTGTGTTGATGTGTGTGTACCCACCGGCAGCTGCAGAGGATGATCTGTGTTTTGGCGCCTCCTGTCTGACCACGGCAGAACTGCAGCAGCACTGGAGAGCCGTCAAGCAGGAGTTCAGGAGCGTTAAACTGCTGTTCGACATCCCCAGCGCCAGAATCATCTCACAAACCATCTCCAAACATGTGGTGTACCAGGTTGTGGTTATTCGCTCGGGTAGTTACGACTGTGAGCGCGTGGCTATCGAGCGCCGCTATTCAGACTTCCTCCACCTCCATCAGGAGCTCCTGTCCGACTTCAGCGAGGAACTTGAGGACGTTGTGTTTCCCAAAAAGAAGATGACCCGAAACTTCTCTGAGGAGATCATCGCTGAGCGTCGCGTAGCTCTGAGAGACTATCTGACCCAGCTCTACTCCCTCCGCTTTGTCAGGAAATCCCAAGCGTTTCAATCCTTCTTCACTCATCAGGAACTGAAATCTGCATATGATCTCCTGAGGGGGGGACGCTTCTCCCGGGCCCTCGAGGGCCT
>TCONS_00048937
AACATGACCTCTTATAGAGACACAAGTGAACTTACACTTTCAACTTCAGCAGATTATCCGATGTCTGTGTGCACAGAGATCTAATTTTGCCCAACTTCCTGAGGAAGTGCAGCACTTTACCTTTCACCGCATGGAACTAATGTAATGTATTTCCTTACAGAGAGCTAAAATTATCAGATCTTCATGGAGGAAGAGGAAAAACCACCCAACATCACTGCTAATCACACGGTTTCATCAGCTCCTGAGCATTTATCACCCCACCAGGAAACGTTACAGGGTAATGGAGAGTAGGATGATCTGTGTTTTGGCGCCTCCTGTCTGACCACGGCAGAACTGCAGCAGCACTGGAGAGCCGTCAAGCAGGAGTTCAGGAGCGTTAAACTGCTGTTCGACATCCCCAGCGCCAGAATCATCTCACAAACCATCTCCAAACATGTGGTGTACCAGGTTGTGGTTATTCGCTCGGGTAGTTACGACTGTGAGCGCGTGGCTATCGAGCGCCGCTATTCAGACTTCCTCCACCTCCATCAGGAGCTCCTGTCCGACTTCAGCGAGGAACTTGAGGACGTTGTGTTTCCCAAAAAGAAGATGACCCGAAACTTCTCTGAGGAGATCATCGCTGAGCGTCGCGTAGCTCTGAGAGACTATCTGACCCAGCTCTACTCCCTCCGCTTTGTCAGGAAATCCCAAGCGTTTCAATCCT

Function


symbol description
snx20 Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Orthologous to human SNX20 (sorting nexin 20).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-100806-1 Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Orthologous to human SNX20 (sorting nexin 20).

Ensembl:

ensembl_id ENSDARG00000045554

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00048934 False 1213 mRNA 0.48 5 35957603 35963158
TCONS_00048935 False 846 mRNA 0.53 2 35957750 35960229
TCONS_00048936 False 854 lncRNA 0.50 3 35958078 35963241
TCONS_00048937 True 703 nonsense_mediated_decay 0.49 5 35958154 35963205

Neighbor


gene id symbol gene type direction distance location
XLOC_024863 mphosph6 coding downstream 1259 35952036 ~ 35956344 (-)
XLOC_024862 NA coding downstream 45406 35905691 ~ 35912197 (-)
XLOC_024861 NA coding downstream 72120 35883577 ~ 35885483 (-)
XLOC_024860 NA coding downstream 213455 35742999 ~ 35744148 (-)
XLOC_024859 NA coding downstream 222080 35735051 ~ 35735523 (-)
XLOC_024865 sall1b coding upstream 23104 35986345 ~ 35996141 (-)
XLOC_024866 rbl2 coding upstream 47574 36010815 ~ 36044583 (-)
XLOC_024867 CU302251.1 coding upstream 95279 36058520 ~ 36058655 (-)
XLOC_024868 NA coding upstream 176602 36139843 ~ 36152385 (-)
XLOC_024869 NA coding upstream 192389 36155630 ~ 36159479 (-)
XLOC_024853 NA non-coding downstream 643980 35312876 ~ 35313623 (-)
XLOC_024883 NA non-coding upstream 762816 36726057 ~ 36790229 (-)
XLOC_024884 CU914144.1 non-coding upstream 771006 36734247 ~ 36734883 (-)

Expression



Co-expression Network