LOC110527399 (LOC106574533)


Basic Information

Item Value
gene id LOC110527399
gene name LOC106574533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 16940571 ~ 16947761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608630.2
AGTCACGTGCCATCACCAAACGCAGCGCATTCACCTAGGTCACAGTAAAATTAGGTTGAcggtttatttatttactatgCGTTGATTAATTTGAAGCCCCATATGCATTTAGAATTTCTCTCCAATCGCGTGTATCCTAATTCGGGAGGTTATACAAACTTTCAGTGTAGCAGGTTGCATTAAAAAAGCAACCAGTGATTGGACGAAGTCAATTCTCGGTCTGTCTTTATCGACCaattcattcatttttttttgttacacAGATGTTATAGACTTCGCTGATATGGATGTTCGTTTGGAAAACCACTTAGATTATTTTATCCACGACAATACTGCTGCTGCGTGGTTGAGTCCAGAAATGCTGTCAGTTGCACGGGAAGCCTTCGGTGCTGGGGACTTCAACCTCCTTGCTGAGATCTACAGCTCCCAGTTGGCGGACCTCCGACACCCGGACCGGAGCCTCTGCCTCCTGAAAGCGGACGCGCTCAGCCGGGCAGGGCGGGTAGCGGACGCTCTGGAATCATACTGGACCGCCGCCAACTTGGACAGGTTACGACCAAATGAACTAGGGTCTTTCGTTGACTGTATTGCGCACACTTTACGCGTAAAAGAATGCCTAAAAGAATGCACAGACTCAGATGGGGTTTCCGAGGATGAGCATTCGTTGGACCTGTTCTCATGTCGGCTTTGCAAGTGCTTGTTAATCGAGCCAACAACTTTGGAATGCGGCCATACATTCTGCAAACCATGCATTGAGGATGACGGTGTCAAAGAATGTGAATTATGTCGTTACAAACTGAACGAAACAAGTAGACAATTAAAACCAATCTGTTTTAAAGTGAATGTAGTACTCGGAGGCCTGTTGGGTAAATGGTTTTGCGCAGAGAGTGAAGCAAGACGATGCTGGCTTGAAGGGGATAGAATGCGGAACGAACGTGGCTTTATCAACGCTCTTGAAAAATACAACAACGCTCTTGAAAAAGCCCCTTCTATGTGTAGGCTGCTGAGCCGACGGGCAGAGCTGCATATGGAGATGAGCAACTTCAGACAGGCCCTACAGGATGGAGACGCCATGTGTCGACTGATGCCCCTCTCTCCCAAGGCTCACTACGTGAAGGCCCTGGCTCTGAACAAAGCCGGTTATAATGAAGAGGCTCTGCAAGAATACCTCTACTGTCTGGCTCTGAAGCCAGACTGGACCTCAGTCAAGCTGGAAACGCAAAAGATGCTGAGTGAGATGTTCTCTGTGTTCAAGACGGACGGTCTCCCCACGTCATCACCCCACCCCCACCAAACAGGCCCCGCTCCCTACCTCAAACCAGCCTCCCTTCTCCTCGGCTCTCTCCATTCCACCCCTCGTAGATGGAGCCAAACCCCTATTGGCCGTAGAGACAGTTTGTCTGACACTGGGGCAGAGACCAAGTCCTCATGTGAGGACTCCAAGACCCTAGCTTCTGTTGTGGCTGCCTTACCTCTCCCCCCTGGCCTAAAGAGGAAGTTCTCAGACGAGCCCCAAGGCTCTGCACCCTCCAACAAGCTCCCCAGAAAAGTCTTGTGTTCAGATGAGTCAAGCTCATCCCAGATGCCTGCTGCTTGTtgcagtgagaggagagaggtgccCCCTCAGCTCCTGGATAGCTCTGACATGGACTGCTCTGTTTGTATGAGGCTGTTCTACGAGCCAGTCACCACCCCCTGTGGACACACCTTCTGCATGAAGTGTCTTGAGCGCTGTCTGGACCACAACCCCAACTGCCCCCTGTGTAAAGAGAACATTACAGAGTACCTGGCCACTAGAGGGTACCATAAGACCCTGCTGATGGAGGAGGTGCTGCAGCGCTACCTGTCTGAGGAGCTGGCTGAGAGGAGCAAGGTGCACCAGGAAGAAATGGCAGAGCTGTCAAACTTGACCCAGGAAGTGCCCATCTTCATCTGCACCATGGCATTTCCCACAATCCCCTGCCCCCTGCAAGTCTTCGAGCCGTGTTATAGGCTGATGATCCGACGCTCTATGGAGACGGGAACCAAGCAGTTTGGAATGTGCATCGCTGACGACATCAAAGGCTTCGCAGACTACGGCTGCATGTTGGAGGTGAAAGACGTGAAGTTCCAACCAGACGGGCGCTTGGTGGTCGACACGGTCGGAGTGTCCCGCTTCAGAGTGCTGAGCCACGGCCACCGTGACGGCTACAACACAGCCAAGATAAAGTACCTGGAGGACcagaaggtggagggagaggagctggCGGAGCTGCAGAAGCTGCATGACTGTGTGTACGAGCAGGCCAGCACCTGGTTCACCTCCCTCAAAGACAACATGAAGAACCAGATCGTCAGCCACTTTGGACAGCTGCCTGAAAAAGACTGTGACATACAGGGGAGTGTCAGtggtcctgcatggtgttggtgGCTGCTGGCTGTACTGCCCCTGGAGAAGAGAGCCCAGCTAAGCATCCTGGCCATGACCACCCTCCGAGAGCGCCTCAGCACCACCCGCCGGGTGCTCAGCCTCGTCACACGCAAACACTCGCGACCACGGCGACCATCTTCATCAGCAGCAGCATCATCACTGTAGTGGCCCCCCTGGAGGGGATCAGTTTAGAATCATCTGGGCCCAGTTAGATAACTTTTGACAATCTGGATGTCGCCTATCAGCTAGGATTAAATGCATacaaatataatgaatagaacaggaGTCCCCGTTGAAGTCAGTTATTTTTCTGTTCTATTAAATATATTTCTATGCATTTAAACCTATCCGATAGACTAAATCCAGATAGATAATTTTTGGAAAACTGGGCCCTGGAGAAGAAGGGAGAAACTAAATTTTCCTCAGAAGCTCTAGCCTCAAATAGTTCTAACAGTGGGAATGATTTACCAGTGTTGTTCATGATCTCAGGAATGGGTTTCTACTTGAGTCTTACAAAAAGGATCGATGGACTAGCCCTACCCAACCAAAACACATAAATGAGTGTCATGTTTGCACACATATCTTTGGGTCAATTCCATTATGTCCAGGTTTGTCATGTTTATGTGTGGTACATTAGGTTAATCTTGTTTTATTGTTGACCTGTGTACAAATGAGGCCTTAAATTATttttgcaatatgttttttttctacTATTTGTCATGTGAAAACAATTTTCATGTACAGAAATTTAGCATTTTTCTATGGGACATAATTAAGATTAATGCACACCATCCCTTACTGGAATAATATGTTCTACTGTATATGGGTAGTTATGGCACGAGGGAACGCTTGATGCAAGAGAAAAATTGTAGCACAACAGACATTGTAGTAGCACCAAAGATTCACAGGGTGGCAGTCCCTTAAGGGAATGTTCATCTTTGGATGCTgtacagcaggggtgtcaaactcattctacAGAGGGCCTGTCTCACCACATTAAAAGCTTCTGTGACACTTAACGTATCTCACTCACGCAGTCAGATCTAGGAGATGCAGTCAGGTGAGTCATTTGGGATACTATGAAGTCAGAACCGGAAATGACACATATTTATAGACAATGAGTCACCTCTGTGCTTTGTCATCACCATGTTGGAATGATCTGGAGTCTCCCCCAATTGATTCATTAGCCAAACCCTCTCGATAAACACACGCCTTCGTTCTCccagaccagtggaggctgctgaggggaggacagctcataataatggctggaattgcttcaaaccatgtgtttgaggtatttgataccgttccagccattaccacgagctcgtcctccccagttaaggtgccaccaatctgTTTCCCAGACACATTTGCAGAAATTGCTCACTACATTTTTGGTAACAAGAATGTGAAATTGGCATTTTATTGCTTTCAATTAATCTTAACTTTTACCTTTTTAAATGTATGATTTTGTTAAATTGGGCCCAACATGTGTATTATTAAAACCATTCCACATTTACCATAAACTTCATCCTCAACAGTCAATTGTCTCCTCAATTTGAGTGTGTTGGCCACGCATACTAATTGGCCAAACCTGATCTTAATTGGTTTGTGTCTTGACAGGGGGTCTGTTTGAACAGTGTGAAAATAATGCTTTGTGCAGAAGTAGACATTCCATATGCAATGCGGGAAAGGTTTTTGTTGTTTTAATAACTCTTCAGCGTGGTCTCTTGAACCATCTTGTTTTATAGCCTAATAAATATTTATTGAATTCTGA
>XM_021608631.2
AGTCACGTGCCATCACCAAACGCAGCGCATTCACCTAGGTCACAGTAAAATTAGGTTGAcggtttatttatttactatgCGTTGATTAATTTGAAGCCCCATATGCATTTAGAATTTCTCTCCAATCGCGTGTATCCTAATTCGGGAGGTTATACAAACTTTCAGTGTAGCAGGTTGCATTAAAAAAGCAACCAGTGATTGGACGAAGTCAATTCTCGGTCTGTCTTTATCGACCaattcattcatttttttttgttacacAGATGTTATAGACTTCGCTGATATGGATGTTCGTTTGGAAAACCACTTAGATTATTTTATCCACGACAATACTGCTGCTGCGTGGTTGAGTCCAGAAATGCTGTCAGTTGCACGGGAAGCCTTCGGTGCTGGGGACTTCAACCTCCTTGCTGAGATCTACAGCTCCCAGTTGGCGGACCTCCGACACCCGGACCGGAGCCTCTGCCTCCTGAAAGCGGACGCGCTCAGCCGGGCAGGGCGGGTAGCGGACGCTCTGGAATCATACTGGACCGCCGCCAACTTGGACAGGTTACGACCAAATGAACTAGGGTCTTTCGTTGACTGTATTGCGCACACTTTACGCGTAAAAGAATGCCTAAAAGAATGCACAGACTCAGATGGGGTTTCCGAGGATGAGCATTCGTTGGACCTGTTCTCATGTCGGCTTTGCAAGTGCTTGTTAATCGAGCCAACAACTTTGGAATGCGGCCATACATTCTGCAAACCATGCATTGAGGATGACGGTGTCAAAGAATGTGAATTATGTCGTTACAAACTGAACGAAACAAGTAGACAATTAAAACCAATCTGTTTTAAAGTGAATGTAGTACTCGGAGGCCTGTTGGGTAAATGGTTTTGCGCAGAGAGTGAAGCAAGACGATGCTGGCTTGAAGGGGATAGAATGCGGAACGAACGTGGCTTTATCAACGCTCTTGAAAAATACAACAACGCTCTTGAAAAAGCCCCTTCTATGTGTAGGCTGCTGAGCCGACGGGCAGAGCTGCATATGGAGATGAGCAACTTCAGACAGGCCCTACAGGATGGAGACGCCATGTGTCGACTGATGCCCCTCTCTCCCAAGGCTCACTACGTGAAGGCCCTGGCTCTGAACAAAGCCGGTTATAATGAAGAGGCTCTGCAAGAATACCTCTACTGTCTGGCTCTGAAGCCAGACTGGACCTCAGTCAAGCTGGAAACGCAAAAGATGCTGAGTGAGATGTTCTCTGTGTTCAAGACGGACGGTCTCCCCACGTCATCACCCCACCCCCACCAAACAGGCCCCGCTCCCTACCTCAAACCAGCCTCCCTTCTCCTCGGCTCTCTCCATTCCACCCCTCGTAGATGGAGCCAAACCCCTATTGGCCGTAGAGACAGTTTGTCTGACACTGGGGCAGAGACCAAGTCCTCATGTGAGGACTCCAAGACCCTAGCTTCTGTTGTGGCTGCCTTACCTCTCCCCCCTGGCCTAAAGAGGAAGTTCTCAGACGAGCCCCAAGGCTCTGCACCCTCCAACAAGCTCCCCAGAAAAGATGAGTCAAGCTCATCCCAGATGCCTGCTGCTTGTtgcagtgagaggagagaggtgccCCCTCAGCTCCTGGATAGCTCTGACATGGACTGCTCTGTTTGTATGAGGCTGTTCTACGAGCCAGTCACCACCCCCTGTGGACACACCTTCTGCATGAAGTGTCTTGAGCGCTGTCTGGACCACAACCCCAACTGCCCCCTGTGTAAAGAGAACATTACAGAGTACCTGGCCACTAGAGGGTACCATAAGACCCTGCTGATGGAGGAGGTGCTGCAGCGCTACCTGTCTGAGGAGCTGGCTGAGAGGAGCAAGGTGCACCAGGAAGAAATGGCAGAGCTGTCAAACTTGACCCAGGAAGTGCCCATCTTCATCTGCACCATGGCATTTCCCACAATCCCCTGCCCCCTGCAAGTCTTCGAGCCGTGTTATAGGCTGATGATCCGACGCTCTATGGAGACGGGAACCAAGCAGTTTGGAATGTGCATCGCTGACGACATCAAAGGCTTCGCAGACTACGGCTGCATGTTGGAGGTGAAAGACGTGAAGTTCCAACCAGACGGGCGCTTGGTGGTCGACACGGTCGGAGTGTCCCGCTTCAGAGTGCTGAGCCACGGCCACCGTGACGGCTACAACACAGCCAAGATAAAGTACCTGGAGGACcagaaggtggagggagaggagctggCGGAGCTGCAGAAGCTGCATGACTGTGTGTACGAGCAGGCCAGCACCTGGTTCACCTCCCTCAAAGACAACATGAAGAACCAGATCGTCAGCCACTTTGGACAGCTGCCTGAAAAAGACTGTGACATACAGGGGAGTGTCAGtggtcctgcatggtgttggtgGCTGCTGGCTGTACTGCCCCTGGAGAAGAGAGCCCAGCTAAGCATCCTGGCCATGACCACCCTCCGAGAGCGCCTCAGCACCACCCGCCGGGTGCTCAGCCTCGTCACACGCAAACACTCGCGACCACGGCGACCATCTTCATCAGCAGCAGCATCATCACTGTAGTGGCCCCCCTGGAGGGGATCAGTTTAGAATCATCTGGGCCCAGTTAGATAACTTTTGACAATCTGGATGTCGCCTATCAGCTAGGATTAAATGCATacaaatataatgaatagaacaggaGTCCCCGTTGAAGTCAGTTATTTTTCTGTTCTATTAAATATATTTCTATGCATTTAAACCTATCCGATAGACTAAATCCAGATAGATAATTTTTGGAAAACTGGGCCCTGGAGAAGAAGGGAGAAACTAAATTTTCCTCAGAAGCTCTAGCCTCAAATAGTTCTAACAGTGGGAATGATTTACCAGTGTTGTTCATGATCTCAGGAATGGGTTTCTACTTGAGTCTTACAAAAAGGATCGATGGACTAGCCCTACCCAACCAAAACACATAAATGAGTGTCATGTTTGCACACATATCTTTGGGTCAATTCCATTATGTCCAGGTTTGTCATGTTTATGTGTGGTACATTAGGTTAATCTTGTTTTATTGTTGACCTGTGTACAAATGAGGCCTTAAATTATttttgcaatatgttttttttctacTATTTGTCATGTGAAAACAATTTTCATGTACAGAAATTTAGCATTTTTCTATGGGACATAATTAAGATTAATGCACACCATCCCTTACTGGAATAATATGTTCTACTGTATATGGGTAGTTATGGCACGAGGGAACGCTTGATGCAAGAGAAAAATTGTAGCACAACAGACATTGTAGTAGCACCAAAGATTCACAGGGTGGCAGTCCCTTAAGGGAATGTTCATCTTTGGATGCTgtacagcaggggtgtcaaactcattctacAGAGGGCCTGTCTCACCACATTAAAAGCTTCTGTGACACTTAACGTATCTCACTCACGCAGTCAGATCTAGGAGATGCAGTCAGGTGAGTCATTTGGGATACTATGAAGTCAGAACCGGAAATGACACATATTTATAGACAATGAGTCACCTCTGTGCTTTGTCATCACCATGTTGGAATGATCTGGAGTCTCCCCCAATTGATTCATTAGCCAAACCCTCTCGATAAACACACGCCTTCGTTCTCccagaccagtggaggctgctgaggggaggacagctcataataatggctggaattgcttcaaaccatgtgtttgaggtatttgataccgttccagccattaccacgagctcgtcctccccagttaaggtgccaccaatctgTTTCCCAGACACATTTGCAGAAATTGCTCACTACATTTTTGGTAACAAGAATGTGAAATTGGCATTTTATTGCTTTCAATTAATCTTAACTTTTACCTTTTTAAATGTATGATTTTGTTAAATTGGGCCCAACATGTGTATTATTAAAACCATTCCACATTTACCATAAACTTCATCCTCAACAGTCAATTGTCTCCTCAATTTGAGTGTGTTGGCCACGCATACTAATTGGCCAAACCTGATCTTAATTGGTTTGTGTCTTGACAGGGGGTCTGTTTGAACAGTGTGAAAATAATGCTTTGTGCAGAAGTAGACATTCCATATGCAATGCGGGAAAGGTTTTTGTTGTTTTAATAACTCTTCAGCGTGGTCTCTTGAACCATCTTGTTTTATAGCCTAATAAATATTTATTGAATTCTGA

Function

NR:

description
LON peptidase N-terminal domain and RING finger protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608630.2 False 4193 mRNA 0.47 10 16940571 16947761
XM_021608631.2 True 4181 mRNA 0.47 10 16940571 16947761

Neighbor

gene id symbol gene type direction distance location
trnan-guu-2 NA coding upstream 9474 16931024 ~ 16931097 (+)
trnak-cuu NA coding upstream 10232 16930267 ~ 16930339 (+)
trnak-uuu-2 NA coding upstream 13283 16927216 ~ 16927288 (+)
trnak-uuu NA coding upstream 14829 16925670 ~ 16925742 (+)
LOC110528796 LOC106574532 coding upstream 20502 16906699 ~ 16920069 (+)
LOC110527400 LOC106575325 coding downstream 353 16948114 ~ 16999494 (+)
LOC110528797 LOC106575326 coding downstream 54756 17002517 ~ 17015547 (+)
LOC110527402 LOC106575321 coding downstream 109996 17057757 ~ 17065172 (+)
LOC110527403 LOC106574539 coding downstream 146784 17042409 ~ 17097924 (+)
LOC110527404 LOC106575319 coding downstream 160903 17108664 ~ 17158356 (+)
G579596 NA non-coding upstream 2435 16933131 ~ 16938136 (+)
G579600 NA non-coding upstream 80499 16859580 ~ 16860072 (+)
G579581 NA non-coding upstream 92097 16848092 ~ 16848474 (+)
G579577 NA non-coding upstream 105010 16835069 ~ 16835561 (+)
G579575 NA non-coding upstream 108362 16831926 ~ 16832209 (+)
G579638 NA non-coding downstream 27371 16975132 ~ 16975406 (+)
G579639 NA non-coding downstream 30916 16978677 ~ 16978965 (+)
G579591 NA non-coding downstream 68758 17016519 ~ 17019766 (+)
G579651 NA non-coding downstream 83530 17031291 ~ 17032219 (+)
G579566 NA other upstream 120681 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 476879 16457220 ~ 16463699 (+)
LOC110528915 LOC106574584 other upstream 892564 16046065 ~ 16048048 (+)
LOC110528906 LOC106574480 other upstream 935578 15993464 ~ 16004993 (+)
LOC110528902 atr other upstream 1441985 15492870 ~ 15498827 (+)
si:ch211-181l5.2 cl10a other downstream 385963 17333699 ~ 17336419 (+)
G580179 NA other downstream 451032 17398793 ~ 17400533 (+)
G580315 LOC106575303 other downstream 722514 17670275 ~ 17680668 (+)
G580365 NA other downstream 865581 17813342 ~ 17816848 (+)

Expression


Co-expression Network