abcb11b (LOC106575306)


Basic Information

Item Value
gene id abcb11b
gene name LOC106575306
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17484375 ~ 17496205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981855.1
CTTGGGCAGTGCGAACCGACAGGACACTTACCTCTAAACACGATCGTATGACCCCAAGTTCCAGCCTGGACCTGGCTTGTTTGTTCAAGAAGTACGTGGTGCAGAGGGCCTCAGCCTCTTCCAGCCCACAGTCACCCTATCAGTCTACTCTTTACCTACTATCAGTGaccacctaccatctctacaAACACACAGTGGTGGCACCAAGCTGTCAGGTGGACTCGGCAGCACGTCTTAGTACGGACTGGAGACTAGTAGTGTACTGTACAATTGGATCGACTATAATGTAAAGAAGCAGAATCCAAAAGGATTTTAGTGCAAAGAGGAGATACGTTGTTTTTTATTGGATTTGGGAAACAACAAGTTGACAGTCCAGGATGCCTGCTGGATCAGTGAAATTACACAGCATCAAAAAGCTGGGAGAAGAAAACAATGGTTTTGATGAAGAACCGAACGACGCATACATGATGATGGGGAACACGAAACAGGACACAAAGTCTCCAAACAAGAAGAAGGAAGCTGCTATTAGGATTGGCTTCTTTCAGCTGtTCCGTTTCGCCACATGCCGGGAGACCCTGATGATGGTGGGGGGTAGTGTGTGTGCCTTCCTCCACGGTTCCGCCCAGCCTCTCATGCTGCTGGTGTTCGGGATGCTCACAGACACCTTCATTGAGTACGACATCGAGTTACAGGAGCTCCTGGACCCCAGGAAGGAATGTATCAACAACACCATACAGTGGAAGAACCAGTCAGCATGGACAGACTGGCTGGACAGCAATAACACTGATAAGATGAAGAATTTAACATGCGGGCTTCTGGACATTGAGTATGAGATGACCAATTTTGCTTACTATTACGTTGCCATTGGATCCGCAGTTTTCTTGCTAGGATACCTTCAAATCTCGTTGTGGGTGACGTCTGCAGCGCGACAGATCCAGATCATCAGAAAGATGTACTTCAGGAAGGTGATGAGGATGGAGATCGGCTGGTTCGACTGCAACTCGACTGGAGAGTTAAACACACGCATGTCAGAtgacatcaacaagatCAATGACGCCATTGCGGATCAAGTGAGCATCTTTATCCAGCGCTTCACCACCTTCGTGTGCGGTTTTGCGATGGGTTTTGTGAAGGGATGGAAGTTAACGCTCGTCATCATCGCAGCCAGCCCTCTCATTGGAGTCGGGGCCGCCCTCATGGCTCTGTTTGTGGCCAAGCTGACGGGTCAGGAGCTGCAGGCCTATGCTAAGGCTGGAGCCGTGGCCGACGAGGTGCTCACCTCCATCAGAACAGTGGCTGCTTTCGGAGGAGAGCTAAAGGAAGTGGAAAGgtatGACAAGAACCTGATCTCAGCTCAGCGTTGGGGCATCAGGAAGGGCCTGATCATGGGCTTCTTCACAGGCTACATGTGGTTTATCATCTTCCTGTGTTACGCCCTGGCCTTCTGGTACGGATCCAGCCTAGTGGTGGACACACAGGAGTACAGCCCCGGAACACTGTTACAGGTTTTCTTTGGTGTGCTGATAGCAGCCCTGAACTTAGGGCAGGCATCTCCATGTCTGGAGGCATTTGCtgcaggaagaggagctgctaccATCATCTTTGAGACCATCGACAGGGAGCCGGACATCGACTGCCTCTCAGAAGCAGGGTACAGACTGGACAAGGTCAAAGGGGACATTGAGTTCCATAACGTCACCTTTCACTACCCATCCAGACCTGAAGTCGTGATCCTGGACAAGCTGAGTGTAGCAGTGAATTCTGGCGAGACGACCGCCTTTGTGGGGCCCAGTGGAGCTGGGAAGAGTACCGCCGTGCAGCTCATCCAACGTTTCTATGACCCCAAGGAGGGCATGGTGACCTTGGATGGCCATGACATCAGAGGCCTGAACATCCAATGGCTACGCTCGTTGATGGGCGTCGTGGAGCAGGAGCCTGTGCTGTTTGCCACAACCATCGCCGAGAACATCCGCTACGGTCGCACCGGAGTCACCCTGGATGACATCATCCACGCCACCAAGGAGGCTAATGCCTACAACTTTATCATGGACCTACCACAGAAATTTGATACGCTGGTGGGAGAGGGTGGAGGTCAGATGAGCGGCGGTCAGAAGCAGCGCATCGCCATCGCccgggccttggtcaggaaccCCCGGATCCTACTGCTGGACATGGCCACCTCCGCTCTGGACAATGAGAGTGAGGCTGTGGTACAGGAGGCACTGGACAAAGTACGCAATGGCCGCACCACCATCTCCATAGCCCATCGCCTGTCCACCATTAAGAACGCGGACGTGATCGTGGGCTACGAGCATGGGCGGGCGGTGGAGAGGGGCAAGCATGATGAGCTGCTGGAGAGGAAGGGTGTTTACTTCACTCTGGTCACCCTACAAAGCCAAGGAGACAAGGCTCTCAACCAGAAGGCCAGACAAATGGCGGGCAATGACGAGCCAGAGCAGAAGAGTTTATCCAGGGCCGGGAGTTACAGGGCCAGTCTCAGATCCTCTATCAGGAAGAGGACCCGCTCACAGCTGTCCAACCTCATTCCAGAAGCAGAATCCTTCATATCTCAGGCAGACGCGGgcaagAGTGCCtttgtggaggaggaagaggtggaggagcaAGTTGAGCCTGCTCCAGTGACCAGGATCCTGAAGTACAATGCCCCTGAATGGCCCTACATGCTGTTTGGAACCATCGGAGCTGCTGTCAACGGAGGAGTCAACCCAGTGTACTCTCTGCTCTTCAGTCAGATTCTGGCGGGCTATGCCTTCTCTAAGTCTGGGGAGCTGCTGACAAGGCGCTTGAGGAGGATGGGTTTCCACGCCATGTTGGGTCAGGAGGTGGGCTGGTTTGATGACCACAGGAACAGCCCCGGGGCTCTGACCACACGGCTGGCCACTGACGCCTCCCAGGTCCAAGGGGCCACTGGCTCTCAGATCGGAATGATCGTTAACTCTCTGACCAACATTGGCGTTGCCGTCATCATTTCCTTCTACTTCAGCTGGAAGCTCAGCCTTGTCATCCTGTGCTTCCTGCCATTCCTGGCTTTGTCCGGAGGCTTCCAGGCTAAGATGCTCACTGGCTTCGCCAAGCAGGACAAACAGGCCATGGAGGATGCAGGACGGATCTCTGGCGAGGCCCTGAACAACATCCGCACCATCGCGGGGCTGGGGAAGGAACAGCGTTTTGTGGAGATGTACGAGGCTCACCTGGAGGCTCCGTACCAGGCCGCCAAGCAGAAGGCCAACGTGTACGGCGCCTGCTACGGCTTCGCCCAGTGTGTCGTCTTCATGGCCAACAGCGCCTCCTACAGGTTTGGAGGGTACCTGGTGCGCCAGGAGGGCCTCCACTTCAGCCTGGTCTTCAGAGTGATCTCAGCCATAGTGACCAGTGGCACAGCGCTGGGCCGAGCCTCTTCCTACACCCCAGACTACGCCAAAGCCAAGATCTCAGCTGCCCGTTTTTTCCAGCTCCTCGACCGCGTGCCAAAGATTCGCGTCTACAGCAACGAGGGGGACAAATGGcCTGATTTCAGAGGGAACTTAGAGTTCATTGACTGTAAGTTCACGTACCCGACCCGGCCAGACATCCAGGTGCTGAACGGCCTCAACGTGTCGGTAAAGCCCGGCCAGACGCTGGCCTTCGTGGGCAGCAGTGGCTGTGGGAAGAGCACCAGCGTCCAGCTACTGGAGAGATTCTATGACCCCGACCAGGGCAAAGTGATTATTGATGGCCATGACTCGACTCAGGTCAATGTCTCGTACCTGCGCTCCAAGATCGGCATCGTATCCCAGGAGCCCATTCTGTTTGACTGCAGCATCGGAGACAACATCAAGTACGGAGACAACCTGCGCGAAGTCAGCATGAATGACATCATCTCCGCATCCAAGAAAGCCCAGCTCCACGACTTTGTCATGACACTACCTGAGAAATACGACACCAACGTAGGTTCCCAGGGCTCCCAGCTCTCTCGGGGACAGAAGCAGCGCATAGCAATCGCCAGGGCGATCATCCGCGACCCTAAGATCCTGCTACTGGACGAAGCCACTTCAGCCCTGGACACGGAGAGCGAGAAGACGGTGCAAGAGGCGCTGGATAAAGCGAGGGAGGGCCGAACCTGCATCGTCATCGCCCACCGTCTCTCCACCATCCAGAACTCTGACATCATCGCCGTTATGTCCAGGGGCTTCGTCATCGAACAGGGACCACATGACCAGCTCATGGCTCTCAAAGGGGCCTATTACAAACTTGTCACCACCGGTGCACCAATCAGCTAACTCCTCAGGGTTATAGGAGCCAAACCAGGAAATGCCTGTTCAGGTCATCACACCGGGTCATATAGTATTTATTTTGCAGGAGGAATCCGGTCAACCGTCACACATTCTTTAGTTTTAATTGGTCATGCTGTGTATTCATTTGTTGTCATTACATTTAAACAGAACTATGGCTGGTATGCATTCATTACTTGTATATACTGTGGTGTACAAAATGAAGGATTAGTTCAATGACTTTCTTGAAGACATGTATTCAAGGTGGGCTTTCCGGCGTTCATAATTCTGCTGTATTAATTGTCTTACCTTTTTATATTTCACTTTTGACTTGTTTTCTGTAATTAACTGTGTTGCATAAGAATAAATTGAATCCAAATATCTACA
>NM_001124656.1
ACCAAGCTGTCAGGTGGACTCGGCAGCACGTCTTAGTACGGACTGGAGACTAGTAGTGTACTGTACAATTGGATCGACTATAATGTAAAGAAGCAGAATCCAAAAGGATTTTAGTGCAAAGAGGAGATACGTTGTTTTTTATTGGATTTGGGAAACAACAAGTTGACAGTCCAGGATGCCTGCTGGATCAGTGAAATTACACAGCATCAAAAAGCTGGGAGAAGAAAACAATGGTTTTGATGAAGAACCGAACGACGCATACATGATGATGGGGAACACGAAACAGGACACAAAGTCTCCAACAAGAAGAAGGACTGCTATTAGGATTGGCTTCTTTCAGCTGtTCCGTTTCGCCACATGCCGGGAGACCCTGATGATGGTGGGGGGAGTGTGTGTGCCTTCCTCCACGGTTCCCCCAGCTCTCATGCTGCTGTGTGGGATGCTCACAGACACCTTCATTGAGTACGACATCGAGTTACAGGAGCTCCTGGACCCCAGGAAGGAATGTATCAACAACACCATACAGTGGAAGAACCAGTCAGCATGGACAGACTGGCTGGACAGCAATAACACTGATAAGATGAAGAATTTAACATGCGGGCTTCTGGACATTGAGTATGAGATGACCAATTTTGCTTACTATTACGTTGCCATTGGATCCGCAGTTTTCTTGCTAGGATACCTTCAAATCTCGTTGTGGGTGACGTCTGCAGCGCGACAGATCCAGATCATCAGAAAGATGTACTTCAGGAAGGTGATGAGGATGGAGATCGGCTGGTTCGACTGCAACTCGACTGGAGAGTTAAACACACGCATGTCAGAtgacatcaacaagatCAATGACGCCATTGCGGATCAAGTGAGCATCTTTATCCAGCGCTTCACCACCTTCGTGTGCGGTTTTGCGATGGGTTTTGTGAAGGGATGGAAGTTAACGCTCGTCATCATCGCAGCCAGCCCTCTCATTGGAGTCGGGGCCGCCCTCATGGCTCTGTTTGTGGCCAAGCTGACGGGTCAGGAGCTGCAGGCCTATGCTAAGGCTGGAGCCGTGGCCGACGAGGTGCTCACCTCCATCAGAACAGTGGCTGCTTTCGGAGGAGAGCTAAAGGAAGTGGAAAGgtatGACAAGAACCTGATCTCAGCTCAGCGTTGGGGCATCAGGAAGGGCCTGATCATGGGCTTCTTCACAGGCTACATGTGGTTTATCATCTTCCTGTGTTACGCCCTGGCCTTCTGGTACGGATCCAGCCTAGTGGTGGACACACAGGAGTACAGCCCCGGAACACTGTTACAGGTTTTCTTTGGTGTGCTGATAGCAGCCCTGAACTTAGGGCAGGCATCTCCATGTCTGGAGGCATTTGCtgcaggaagaggagctgctaccATCATCTTTGAGACCATCGACAGGGAGCCGGACATCGACTGCCTCTCAGAAGCAGGGTACAGACTGGACAAGGTCAAAGGGGACATTGAGTTCCATAACGTCACCTTTCACTACCCATCCAGACCTGAAGTCGTGATCCTGGACAAGCTGAGTGTAGCAGTGAATTCTGGCGAGACGACCGCCTTTGTGGGGCCCAGTGGAGCTGGGAAGAGTACCGCCGTGCAGCTCATCCAACGTTTCTATGACCCCAAGGAGGGCATGGTGACCTTGGATGGCCATGACATCAGAGGCCTGAACATCCAATGGCTACGCTCGTTGATGGGCGTCGTGGAGCAGGAGCCTGTGCTGTTTGCCACAACCATCGCCGAGAACATCCGCTACGGTCGCACCGGAGTCACCCTGGATGACATCATCCACGCCACCAAGGAGGCTAATGCCTACAACTTTATCATGGACCTACCACAGAAATTTGATACGCTGGTGGGAGAGGGTGGAGGTCAGATGAGCGGCGGTCAGAAGCAGCGCATCGCCATCGCccgggccttggtcaggaaccCCCGGATCCTACTGCTGGACATGGCCACCTCCGCTCTGGACAATGAGAGTGAGGCTGTGGTACAGGAGGCACTGGACAAAGTACGCAATGGCCGCACCACCATCTCCATAGCCCATCGCCTGTCCACCATTAAGAACGCGGACGTGATCGTGGGCTACGAGCATGGGCGGGCGGTGGAGAGGGGCAAGCATGATGAGCTGCTGGAGAGGAAGGGTGTTTACTTCACTCTGGTCACCCTACAAAGCCAAGGAGACAAGGCTCTCAACCAGAAGGCCAGACAAATGGCGGGCAATGACGAGCCAGAGCAGAAGAGTTTATCCAGGGCCGGGAGTTACAGGGCCAGTCTCAGATCCTCTATCAGGAAGAGGACCCGCTCACAGCTGTCCAACCTCATTCCAGAAGCAGAATCCTTCATATCTCAGGCAGACGCGGgcaagAGTGCCtttgtggaggaggaagaggtggaggagcaAGTTGAGCCTGCTCCAGTGACCAGGATCCTGAAGTACAATGCCCCTGAATGGCCCTACATGCTGTTTGGAACCATCGGAGCTGCTGTCAACGGAGGAGTCAACCCAGTGTACTCTCTGCTCTTCAGTCAGATTCTGGCGACATTCTCCATACCAGACCCAGAGGCTCAGAGGAGGGAGATCAATGGCATCTGCATGTTCTTTGTGCTGGTCGGAGTGACTTCCTTCATCACCCAGATGCTCCAAGGCTATGCCTTCTCTAAGTCTGGGGAGCTGCTGACAAGGCGCTTGAGGAGGATGGGTTTCCACGCCATGTTGGGTCAGGAGGTGGGCTGGTTTGATGACCACAGGAACAGCCCCGGGGCTCTGACCACACGGCTGGCCACTGACGCCTCCCAGGTCCAAGGGGCCACTGGCTCTCAGATCGGAATGATCGTTAACTCTCTGACCAACATTGGCGTTGCCGTCATCATTTCCTTCTACTTCAGCTGGAAGCTCAGCCTTGTCATCCTGTGCTTCCTGCCATTCCTGGCTTTGTCCGGAGGCTTCCAGGCTAAGATGCTCACTGGCTTCGCCAAGCAGGACAAACAGGCCATGGAGGATGCAGGACGGATCTCTGGCGAGGCCCTGAACAACATCCGCACCATCGCGGGGCTGGGGAAGGAACAGCGTTTTGTGGAGATGTACGAGGCTCACCTGGAGGCTCCGTACCAGGCCGCCAAGCAGAAGGCCAACGTGTACGGCGCCTGCTACGGCTTCGCCCAGTGTGTCGTCTTCATGGCCAACAGCGCCTCCTACAGGTTTGGAGGGTACCTGGTGCGCCAGGAGGGCCTCCACTTCAGCCTGGTCTTCAGAGTGATCTCAGCCATAGTGACCAGTGGCACAGCGCTGGGCCGAGCCTCTTCCTACACCCCAGACTACGCCAAAGCCAAGATCTCAGCTGCCCGTTTTTTCCAGCTCCTCGACCGCGTGCCAAAGATTCGCGTCTACAGCAACGAGGGGGACAAATGGcCTGATTTCAGAGGGAACTTAGAGTTCATTGACTGTAAGTTCACGTACCCGACCCGGCCAGACATCCAGGTGCTGAACGGCCTCAACGTGTCGGTAAAGCCCGGCCAGACGCTGGCCTTCGTGGGCAGCAGTGGCTGTGGGAAGAGCACCAGCGTCCAGCTACTGGAGAGATTCTATGACCCCGACCAGGGCAAAGTGATTATTGATGGCCATGACTCGACTCAGGTCAATGTCTCGTACCTGCGCTCCAAGATCGGCATCGTATCCCAGGAGCCCATTCTGTTTGACTGCAGCATCGGAGACAACATCAAGTACGGAGACAACCTGCGCGAAGTCAGCATGAATGACATCATCTCCGCATCCAAGAAAGCCCAGCTCCACGACTTTGTCATGACACTACCTGAGAAATACGACACCAACGTAGGTTCCCAGGGCTCCCAGCTCTCTCGGGGACAGAAGCAGCGCATAGCAATCGCCAGGGCGATCATCCGCGACCCTAAGATCCTGCTACTGGACGAAGCCACTTCAGCCCTGGACACGGAGAGCGAGAAGACGGTGCAAGAGGCGCTGGATAAAGCGAGGGAGGGCCGAACCTGCATCGTCATCGCCCACCGTCTCTCCACCATCCAGAACTCTGACATCATCGCCGTTATGTCCAGGGGCTTCGTCATCGAACAGGGACCACATGACCAGCTCATGGCTCTCAAAGGGGCCTATTACAAACTTGTCACCACCGGTGCACCAATCAGCTAACTCCTCAGGGTTATAGGAGCCAAACCAGGAAATGCCTGTTCAGGTCATCACACCGGGTCATATAGTATTTATTTTGCAGGAGGAATCCGGTCAACCGTCACACATTCTTTAGTTTTAATTGGTCATGCTGTGTATTCATTTGTTGTCATTACATTTAAACAGAACTATGGCTGGTATGCATTCATTACTTGTATATACTGTGGTGTACAAAATGAAGGATTAGTTCAATGACTTTCTTGAAGACATGTATTCAAGGTGGGCTTTCCGGCGTTCATAATTCTGCTGTATTAATTGTCTTACCTTTTTATATTTCACTTTTGACTTGTTTTCTGTAATTAACTGTGTTGCATAAGAATAAATTGAATCCAAATATCTACA

Function

NR:

description
bile salt export pump-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05664 ABCB11; ATP-binding cassette, subfamily B (MDR/TAP), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981855.1 False 4658 mRNA 0.53 28 17484375 17496205
NM_001124656.1 True 4552 mRNA 0.53 36 17484577 17496205
Loading

Neighbor

gene id symbol gene type direction distance location
LOC100136600 LOC106574550 coding upstream 10437 17468347 ~ 17473938 (+)
LOC110527410 LOC106575311 coding upstream 86357 17372378 ~ 17398018 (+)
si:ch211-181l5.2 cl10a coding upstream 147956 17333699 ~ 17336419 (+)
LOC110527408 LOC106574552 coding upstream 152538 17328880 ~ 17331837 (+)
LOC118965348 LOC106574556 coding upstream 158024 17322665 ~ 17326351 (+)
LOC100136260 LOC100195750 coding downstream 18031 17514236 ~ 17518488 (+)
LOC110527418 LOC106575302 coding downstream 230685 17726890 ~ 17750107 (+)
LOC110528802 LOC106574564 coding downstream 395750 17891955 ~ 17929312 (+)
LOC110527422 LOC106575297 coding downstream 506128 18002333 ~ 18079999 (+)
LOC110527424 LOC106575296 coding downstream 600252 18096457 ~ 18107236 (+)
G580212 NA non-coding upstream 53039 17431098 ~ 17431336 (+)
G580202 NA non-coding upstream 57367 17412867 ~ 17427008 (+)
G580196 NA non-coding upstream 78978 17404840 ~ 17405397 (+)
G580194 NA non-coding upstream 81450 17402669 ~ 17402925 (+)
G580192 NA non-coding upstream 82559 17401555 ~ 17401816 (+)
G580246 NA non-coding downstream 33199 17529404 ~ 17529612 (+)
G580250 NA non-coding downstream 43408 17539613 ~ 17539860 (+)
G580253 NA non-coding downstream 46787 17542992 ~ 17543733 (+)
G580254 NA non-coding downstream 48024 17544229 ~ 17544434 (+)
G580259 NA non-coding downstream 54127 17550332 ~ 17550888 (+)
G580179 NA other upstream 83842 17398793 ~ 17400533 (+)
LOC110527403 LOC106574539 other upstream 386451 17042409 ~ 17097924 (+)
G579566 NA other upstream 664485 16818542 ~ 16819890 (+)
LOC110528786 omp-1 other upstream 1020683 16457220 ~ 16463699 (+)
G580315 LOC106575303 other downstream 174070 17670275 ~ 17680668 (+)
G580365 NA other downstream 317137 17813342 ~ 17816848 (+)
G580997 NA other downstream 996022 18492227 ~ 18492909 (+)
G581976 LOC106581475 other downstream 1480473 18976678 ~ 18976999 (+)
LOC110528807 LOC106574429 other downstream 2521650 20017855 ~ 20028775 (+)

Expression

abcb11b(LOC106575306) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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abcb11b(LOC106575306) Expression in each Bioproject

Bar chart with 18 bars.
abcb11b(LOC106575306) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
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Co-expression Network