LOC110527099 (LOC106575332)


Basic Information

Item Value
gene id LOC110527099
gene name LOC106575332
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17823526 ~ 17827349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608262.2
ATGAGGGGTGCTGTAGCTCTGCTGGTGTTGCTGCTCTGTCAGTCTGGGACACGggctcagggagagagtggaggggatagagagagtttaGTGGAGAGCCGCGGGACTGGAGATACAGAGTTGACTAGCAAACAGACGACCGGCCAGACCATCACAACGCCTGATATCTGGGGTGAGGTAGAGGAGCTTAGAGACGTGGTGGATAACCTGGGAACCATGATtttggagcagagagagaagatgaggaacaTGGAGAAAAAGATGGAAAGAAGGTGGAGAGAAAAATGGCGAAGAGGATCTGAGGCCAGACTGGAGAGTGAGAATGCTGCTATGAGGGCCAGACTGAGTGTCAtcgagagggaggtagaggactTGAAAGAACAGAATACAGCCATGGGCGCCAGACTGAGTGCCAGTGAAagggaggtggaggagctgaagagaATAAATGCAGCCCTGGAGGCCAGAGCGACAGACAGTGAGAATGGGAATACAGCCTTAGAGGCCAGACTGAATGCCAGCGAGGGGATGGTGgaggagctgaggagagagaaTGCAGACAGACCAAAGGTGGCCTTCTCTGCTGGTTTGACTAACGATGGATATTTAGGACCCTTTAATAGTATCACCACACTAGTATACAGAAGGGTCATCACCAACATCGGCAAGGCCTACAACCCAAATACAGGTGTCTTCACAGCACCAGTGAGAGGACTCTACTACATCAGATTCACTGCCATGGGTCTCAAGGGTCCACAGTCCATAGATGCCTATATTTACCACAACGACAAGAGTGTCATGTTCAATCACCAGAACAATGACAATGGGCGTAATAGGTTCTTGTCTAATGCGTTGACTCTAGAGCTGGAGGCCGGGGATGTGGTCTACATGCGTCTCCCAGTAAATCAGGAGCTCTATGATGAAAAGTCGAGTAACTACAGCACCTTCAGTGGCTTCCTGCTGTTCCCTATGTGAAGGGAACACTCTGGTGTGAGTTTGAGATCAATAAATTATCCAGATTATTTCTATCATTGATGTGAAGCGATTCCTTCACTCCGTCCAGGATTTTCCTTGTATTTTTGACAGTTAGAATtgcagagagaaagggaaataaGATAATAAGAATCATACAAATGAatgatttatttgatttgaaaatgtaaACGGTTGTTACGTTCATATGTTGATGGACATGATAAGAAGTCCAGACCCCTCTTTGACCAGGAAACAAGTCAAAGTGTGAACTGGTAACACAACAACGGCGCTTGTCCTAGTAGTGGTGTTCAAGGCACACTCAGGTTGACATTaaacaggctgtgtgtgtctctctcactacCTCCCCACGGTAAGGCCTCCACACCAACACAAAACAGCCTCTTCATCTTTGTCACCGCTGGTGAACAGAACTCAGAGAAAAAAGACATCACGTGGCATTCCAAAAGGTTCAGTTTTGGGTCTGGTACTGTtcagtttatacagtatatgtaacCCCTTGGCAGCGTTATCAGAAAGCACGTAATTGATTTTCACTGCAACGCACAGAAACATTTCTGTGTCACCAGAGTATTTTAGCTCCACAGATAAATTCTTAAGACTGTATTAGTGGtttaaatacttggatggctcacaacttcctccagctaaatcaagacaagactGAGGTACTTATTATTGGAGCCAATTATTACAGAGAATTTGGATCACATTTTAATTTATGGGCAgtaaagataaaacaccaggtaCAAAACCTAGGTGTCATTTTATATTCTGAACTCAACTTCaaatcacacattaggaatgtgaaCAAAATAGCTTTTAACCACCTGAGGAATATTTCCAATGTGCGGCTGTTTCActctcaggctgatacagggAAACTCtttccatgcttttattacaagcagactactgcaatgctctcctgtctggtctgcccaagaaagccattggtcaactgcaaaacatacagaacgctgcagcacgggtactgaccaagaccagacagagagcacacattacaccaggtttaaggtctctgtactggctgcctgtgagtttcaGAATTCATTTTAAGATAATtttattggtttttaaatcaatccacaattgtgcaccccaatacatgtcagacctGCTTTCAGAGTACGTCCCTCAGGCCCTCTGtccccaaagcctaggaccaagaggtatggagaggcagcctttagttatgccCCCAACCTCTGGAACAGCCtgtcagagaacctgaggggggctgAAACTGTGGACATAATTTAAAAGAGATCTTTTTAGTTTTGCTTTTCCTAAGTGTGCTTTTTAGTTGTTCAGTCTTTGTTACTCTTTTTTTATCCtcttatttcagttttttttttaatgaatgttTTTCCTTGTGAAGTGCAGTGTTGCATTTA

Function

NR:

description
cerebellin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608262.2 True 2411 mRNA 0.45 7 17823526 17827349

Neighbor

gene id symbol gene type direction distance location
LOC110527420 LOC106575301 coding downstream 19875 17755326 ~ 17803651 (-)
LOC110528801 LOC106575303 coding downstream 108592 17665513 ~ 17714934 (-)
LOC110527416 LOC106575305 coding downstream 161030 17536258 ~ 17662496 (-)
LOC110527417 LOC106575307 coding downstream 341558 17474265 ~ 17481968 (-)
LOC110527413 LOC106575308 coding downstream 361314 17431894 ~ 17462212 (-)
LOC110527421 NA coding upstream 107445 17934794 ~ 17940045 (-)
LOC110527423 gran coding upstream 252642 18079991 ~ 18090271 (-)
LOC110527425 LOC106575295 coding upstream 296599 18123948 ~ 18164002 (-)
LOC110527428 LOC106575293 coding upstream 346205 18173554 ~ 18176952 (-)
LOC110527429 psde coding upstream 351106 18178455 ~ 18193482 (-)
G580674 NA non-coding downstream 1355 17818110 ~ 17822171 (-)
G580657 NA non-coding downstream 49195 17773785 ~ 17774331 (-)
G580648 NA non-coding downstream 73431 17747688 ~ 17750095 (-)
G580621 NA non-coding downstream 174611 17648579 ~ 17648915 (-)
G580619 NA non-coding downstream 176800 17646519 ~ 17646726 (-)
G580729 NA non-coding upstream 85994 17913343 ~ 17913585 (-)
G580737 NA non-coding upstream 98400 17925749 ~ 17927237 (-)
G580738 NA non-coding upstream 100029 17927378 ~ 17929273 (-)
G580741 NA non-coding upstream 104705 17932054 ~ 17932260 (-)
G581049 NA non-coding upstream 154432 17981781 ~ 17982024 (-)
G580487 NA other downstream 422990 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1022840 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1262381 16559930 ~ 16635251 (-)
G579278 NA other downstream 1357992 16464942 ~ 16465534 (-)
LOC110528887 LOC106574501 other downstream 1502762 16316980 ~ 16320794 (-)
G581089 LOC106575297 other upstream 215578 18042927 ~ 18043380 (-)
G581174 LOC101077481 other upstream 389809 18217158 ~ 18235038 (-)
G583661 NA other upstream 2388300 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2945518 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 3011139 20838415 ~ 20839399 (-)

Expression


Co-expression Network