LOC110527421


Basic Information

Item Value
gene id LOC110527421
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 17934794 ~ 17940045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474132.2
TCTATGTGTTGAGAAATTTGGTGACATTGTTGGATTAAGAGTGAAGAATGATAGTTTAGCATTTTGGGGATATTATTCCATTAAAATTAGTTTTTTCAAATtacaggagatggaggaggtataTTATGaattgttttcttggttttaGAACTTTATTTTTGTGTCCAGTTAGTGCAATTTATTTAAACTTGCCTTGCTAacttcagtagctagctagctaccagcgCGAATGTGTAGTTTTCTCTGCCAGAATGGTCAATGCTGCCGAAAATGTTATGGACTTtttgttgaagaacccctttcattTTCTGGGGTACATGGAAAAGTTGCAAATTAAATGCAGGGGTCGACCTCTGCCTGAGCTCAGCTTCATGAAGGATGAAAAGTTGAGGGCGTTCAATACCAACTGGTATCAAAAGTATATCTGGTTAACAGGGAACTTTCATCGAAGCCGCATTTATTGCTGACCTTACCTGCTTTTTGGAAAGTCTGAGCCTTGGTCGAAAGGTGGGTACAGTGACCTGAAGAACATTGATCGTTCAGCTAAATGGCAAAACAGAAGCAGGGAGCATATAAATGCCCATATCAGATTCAAGCTTCTGGAAAAAAGCTGCATCGATTATGACAAAGGTCTGCGTATTCAAACTGCGCAACACAACTAGAAAGTAAGAAGAAACAGGGATATTATCAAGCTGCTTATCACGACGAGAGGTAAAGTTCCACCAACAAGGGCAACTACTACAAGGAGCTTGCAGAGccaagtcccctcctgttccctgatttTAAGAGGTGATGACTACTCCACTTCACTACCTTTGTCAACTTTCTCCTGACATTAACTGAAGCCCCTTCTCATGTGCCCGCTCTTACACTGGCACGCACATTGAATACTTCCCCTCCAAGCACTtcaaatcctgtcctgcattggtcaagcctctgaacaccccATCTCATGCCTCATACCttcattcaatcactgctgtgatccctttCCAACATGGTAAAGGAAGAAACGATGATCTGAACAAAAAGCAGTCAAGCAGTcagtctgacaaacacacacacacaccagacaataGATTCGAGGAGAAACCCACCAAAAATCCCTTCAGAACTTCACAGTCTGTCTTTTGTCAGGCTATCTAGCGCTGTGAACGCACGCTGATGCCCCACAGTAGGCCTCTGCTGCatatctgtctgcctgtccatCAGTCACGGTTGAGTCAAACATGACAgcctctgcctgtgtgtctgagaGCGTTAAAGCACAGTGTAATCTGACAACACAAAGCAGTAAGAGCTCTAAAATAGCTATGAAAGCTCTACTCTGTACCCATTGTTTTAATAAAGCTCTACTCTTTAACCATTGTTTTAATAAAGCTCTACTCTAGCCATTGTTTTTAATAAAGCTCTACTCTATAACCATTGTTTCAATAAAGCTCTACTCTATAACCATTGTTTCAATAAAGCTCTACTCTATAACCATTGTTTTAATAAAGCTCTACTCTGTACCCATTGTTTTAATAAAGTTCTACTCTGTACCCATTGTTTTAATAAAGCTCTACTCTAGCCATTGTTTTTAATAAAGCTCTACTCTATAACCATTGTTTCAATAAAGCTCTACTCTATAACCATTGTTTCAATAAAGCTCTACTCTATAACCATTGTTTTAATAAAGCTCTACTCTGTACCCATTGTTTTAATAAAGCTCTACTCTGTACCCATTGTTTTAAAAAAGCTCTACTCTATAACCATTGTTTTAATAAAGCTCTACTCTATAACCATTGTTTAAATAAAGCTCTACTCTAGCCATTGTTTTTAATAAAGCTCTACTCTATAGCCATTGTTTttaataaacctctactttatAGCCATTGTTTTTAATAAAGCTCTACT

Function

NR:

description
zinc finger MYM-type protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474132.2 True 1896 mRNA 0.39 4 17934794 17940045

Neighbor

gene id symbol gene type direction distance location
LOC110527099 LOC106575332 coding downstream 107445 17823526 ~ 17827349 (-)
LOC110527420 LOC106575301 coding downstream 131143 17755326 ~ 17803651 (-)
LOC110528801 LOC106575303 coding downstream 219860 17665513 ~ 17714934 (-)
LOC110527416 LOC106575305 coding downstream 272298 17536258 ~ 17662496 (-)
LOC110527417 LOC106575307 coding downstream 452826 17474265 ~ 17481968 (-)
LOC110527423 gran coding upstream 139946 18079991 ~ 18090271 (-)
LOC110527425 LOC106575295 coding upstream 183903 18123948 ~ 18164002 (-)
LOC110527428 LOC106575293 coding upstream 233509 18173554 ~ 18176952 (-)
LOC110527429 psde coding upstream 238410 18178455 ~ 18193482 (-)
LOC110528804 mospd2 coding upstream 253979 18194024 ~ 18199581 (-)
G580741 NA non-coding downstream 2534 17932054 ~ 17932260 (-)
G580738 NA non-coding downstream 5521 17927378 ~ 17929273 (-)
G580737 NA non-coding downstream 7557 17925749 ~ 17927237 (-)
G580729 NA non-coding downstream 21209 17913343 ~ 17913585 (-)
G580674 NA non-coding downstream 112623 17818110 ~ 17822171 (-)
G581049 NA non-coding upstream 41736 17981781 ~ 17982024 (-)
G581050 NA non-coding upstream 42265 17982310 ~ 17982587 (-)
G581057 NA non-coding upstream 55112 17995157 ~ 17995361 (-)
G581061 NA non-coding upstream 62026 18002071 ~ 18002275 (-)
G581064 NA non-coding upstream 64234 18004279 ~ 18004874 (-)
G580487 NA other downstream 534258 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1134108 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1373649 16559930 ~ 16635251 (-)
G579278 NA other downstream 1469260 16464942 ~ 16465534 (-)
LOC110528887 LOC106574501 other downstream 1614030 16316980 ~ 16320794 (-)
G581089 LOC106575297 other upstream 102882 18042927 ~ 18043380 (-)
G581174 LOC101077481 other upstream 277113 18217158 ~ 18235038 (-)
G583661 NA other upstream 2275604 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2832822 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2898443 20838415 ~ 20839399 (-)

Expression


Co-expression Network