LOC110527423 (gran)


Basic Information

Item Value
gene id LOC110527423
gene name gran
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18079991 ~ 18090271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982850.1
GATACGTTGTTGCAGTGCATTTCAAGTAACGAGTTCGGTTTTGGTTTACATTTACTGACATCGAAACATTTCAGTGCATCGAATCGTTTTGTGGCAATTCTTTATAGTGTACAAATGGCTTATCCAGGATATGGCGGGTATGGAGGACCAATGCAAGGCATGCAACTCCAGGGTATGCCCATGCAGGGTGGACCCATGGGAGGCCCACCCCAGGCAGGCTACCCCCAGAATGGTGGAGGCTACCCTGGTACCTTTGCTGCTCCTCCTCAGCAGCCTGTTAATGACCCCATGTGGGGATACTTTACTACCATAGCAGGACAGGATGGTGAGATTGATGCAGAGGAGCTTCAGAGGTGTCTTACACAGACTGGTATCAGTGGCACCTATACTCCCTTCAGTTTGGAGACATGTAGAATCATGATCGCAATGCTGGATAGAGACATGACTGGAAAGCTGGGCTTCATTGAGTTCAAGGAGCTGTTTGCTGCCCTGAGTAGCTGGAAGCAGAACTTCATGATGTTCGACCAGGACCGGAGTGGCACGGTGGAACCCCATGAGATGACCCAGTCCATCTCCGCTATGGGCTACAGGATCAGCCCGCAAGCTCTGAACGCTGTCATCAAACGCTACAGCAAGGCTGGCCGGATCTACTTTGACGACTATGTGGCATGTGCTGTGAAGCTTCGCGCCCTCACAGAGAGCTTCAGGAGGAGAGACCAGATGCAGCAGGGGGCTGTCAACTTCCAATACGATGACTTTATCCTGTGTACCATGTCCATCTGAGTGGTGTGGTCCGGCCCATCCCGTGCTGGAGTCAGAGCGGGGTGCTTCGACCGGCAGTCTGGGGCTCGCTGACCACTTCCCCTAAATAATGGAAAGGCACCAATCAATATTAGCCTATTGTTCTTAGGTTGAGTCCCATAACCAACTTAAAATGGGGAAGGAGTTTACAACAGAAACTGCTTGTTTGCTTGCCATAATGTCTGCCTGCCTTGTACGCTATGCAAGAATGTGCAGATTTGCCAGATATCATATGGCGTGTTTCTAAATGTATCTGCTTGTTGTAAATTCTGTTGCTAAAGGACAGTGGTAGATTTGAATAAAGAAAGGGATGGCAAAGCTGTTACTGATCTTTATGATGATGACTTTTGTGCCTCAGATCATACGGTTTCCATATTCTTCCCCATCACTGTATACGTTCTGTTTTTATAACCACTATATTGTTTTATAACCACTATATAGGTGTGAACTAGTTTTACATTAAACACATTTTAAAGTATAGgtatatataatattttttattaCAAATATACATTTATGCTAGCTTTGCCTTTTTGTTTAAGGTAACTATATGCATCTCTTGATTTAAATAAAATGTGGCCTAACATGATAAACAAATGAATCAAACATGGAATTCACAAATATATATGAATAACACGCACTGTGGTAAACATGCACTGTTATTCCTTTGCGAAGAAAAGCATGCATTAACTACCAATGACAATGTCTCTAATTTTGTGATACCATTTGCATAACTCAGGATGAAATATTTATCAGACATGTTAAGTGCTTCATGACTGTTGGGCCATTCATCAGTGATATTGGTGTCATTCACAACACAATAAACTCAGTTTGTAGTCA
>XM_036982849.1
TATTGTGGCTGtagtaactagtgacgaccggaAATTATGTACACGATACGTTGTTGCAGTGCATTTCAAGTAACGAGTTCGGTTTTGGTTTACATTTACTGACATCGAAACATTTCAGTGCATCGAATCGTTTTGTGGCAATTCTTTATAGTGTACAAATGGCTTATCCAGGATATGGCGGGTATGGAGGACCAATGCAAGGCATGCAACTCCAGGGTATGCCCATGCAGGGTGGACCCATGGGAGGCCCACCCCAGGCAGGCTACCCCCAGAATGGTGGAGGCTACCCTGGTACCTTTGCTGCTCCTCCTCAGCAGCCTGTTAATGACCCCATGTGGGGATACTTTACTACCATAGCAGGACAGGATGGTGAGATTGATGCAGAGGAGCTTCAGAGGTGTCTTACACAGACTGGTATCAGTGGCACCTATACTCCCTTCAGTTTGGAGACATGTAGAATCATGATCGCAATGCTGGATAGAGACATGACTGGAAAGCTGGGCTTCATTGAGTTCAAGGAGCTGTTTGCTGCCCTGAGTAGCTGGAAGCAGAACTTCATGATGTTCGACCAGGACCGGAGTGGCACGGTGGAACCCCATGAGATGACCCAGTCCATCTCCGCTATGGGCTACAGGATCAGCCCGCAAGCTCTGAACGCTGTCATCAAACGCTACAGCAAGGCTGGCCGGATCTACTTTGACGACTATGTGGCATGTGCTGTGAAGCTTCGCGCCCTCACAGAGAGCTTCAGGAGGAGAGACCAGATGCAGCAGGGGGCTGTCAACTTCCAATACGATGACTTTATCCTGTGTACCATGTCCATCTGAGTGGTGTGGTCCGGCCCATCCCGTGCTGGAGTCAGAGCGGGGTGCTTCGACCGGCAGTCTGGGGCTCGCTGACCACTTCCCCTAAATAATGGAAAGGCACCAATCAATATTAGCCTATTGTTCTTAGGTTGAGTCCCATAACCAACTTAAAATGGGGAAGGAGTTTACAACAGAAACTGCTTGTTTGCTTGCCATAATGTCTGCCTGCCTTGTACGCTATGCAAGAATGTGCAGATTTGCCAGATATCATATGGCGTGTTTCTAAATGTATCTGCTTGTTGTAAATTCTGTTGCTAAAGGACAGTGGTAGATTTGAATAAAGAAAGGGATGGCAAAGCTGTTACTGATCTTTATGATGATGACTTTTGTGCCTCAGATCATACGGTTTCCATATTCTTCCCCATCACTGTATACGTTCTGTTTTTATAACCACTATATTGTTTTATAACCACTATATAGGTGTGAACTAGTTTTACATTAAACACATTTTAAAGTATAGgtatatataatattttttattaCAAATATACATTTATGCTAGCTTTGCCTTTTTGTTTAAGGTAACTATATGCATCTCTTGATTTAAATAAAATGTGGCCTAACATGATAAACAAATGAATCAAACATGGAATTCACAAATATATATGAATAACACGCACTGTGGTAAACATGCACTGTTATTCCTTTGCGAAGAAAAGCATGCATTAACTACCAATGACAATGTCTCTAATTTTGTGATACCATTTGCATAACTCAGGATGAAATATTTATCAGACATGTTAAGTGCTTCATGACTGTTGGGCCATTCATCAGTGATATTGGTGTCATTCACAACACAATAAACTCAGTTTGTAGTCA
>XM_021608685.2
ATGGGCGGGTTTTTAGATATTGTGGCTGtagtaactagtgacgaccggaAATTATGTACACGATACGTTGTTGCAGTGCATTTCAAGTAACGAGTTCGGTTTTGGTTTACATTTACTGACATCGAAACATTTCAGTGCATCGAATCGTTTTGTGGCAATTCTTTATAGTGTACAAATGGCTTATCCAGGATATGGCGGGTATGGAGGACCAATGCAAGGCATGCAACTCCAGGGTATGCCCATGCAGGGTGGACCCATGGGAGGCCCACCCCAGGCAGGCTACCCCCAGAATGGTGGAGGCTACCCTGGTACCTTTGCTGCTCCTCCTCAGCAGCCTGTTAATGACCCCATGTGGGGATACTTTACTACCATAGCAGGACAGGATGGTGAGATTGATGCAGAGGAGCTTCAGAGGTGTCTTACACAGACTGGTATCAGTGGCACCTATACTCCCTTCAGTTTGGAGACATGTAGAATCATGATCGCAATGCTGGATAGAGACATGACTGGAAAGCTGGGCTTCATTGAGTTCAAGGAGCTGTTTGCTGCCCTGAGTAGCTGGAAGCAGAACTTCATGATGTTCGACCAGGACCGGAGTGGCACGGTGGAACCCCATGAGATGACCCAGTCCATCTCCGCTATGGGCTACAGGATCAGCCCGCAAGCTCTGAACGCTGTCATCAAACGCTACAGCAAGGCTGGCCGGATCTACTTTGACGACTATGTGGCATGTGCTGTGAAGCTTCGCGCCCTCACAGAGAGCTTCAGGAGGAGAGACCAGATGCAGCAGGGGGCTGTCAACTTCCAATACGATGACTTTATCCTGTGTACCATGTCCATCTGAGTGGTGTGGTCCGGCCCATCCCGTGCTGGAGTCAGAGCGGGGTGCTTCGACCGGCAGTCTGGGGCTCGCTGACCACTTCCCCTAAATAATGGAAAGGCACCAATCAATATTAGCCTATTGTTCTTAGGTTGAGTCCCATAACCAACTTAAAATGGGGAAGGAGTTTACAACAGAAACTGCTTGTTTGCTTGCCATAATGTCTGCCTGCCTTGTACGCTATGCAAGAATGTGCAGATTTGCCAGATATCATATGGCGTGTTTCTAAATGTATCTGCTTGTTGTAAATTCTGTTGCTAAAGGACAGTGGTAGATTTGAATAAAGAAAGGGATGGCAAAGCTGTTACTGATCTTTATGATGATGACTTTTGTGCCTCAGATCATACGGTTTCCATATTCTTCCCCATCACTGTATACGTTCTGTTTTTATAACCACTATATTGTTTTATAACCACTATATAGGTGTGAACTAGTTTTACATTAAACACATTTTAAAGTATAGgtatatataatattttttattaCAAATATACATTTATGCTAGCTTTGCCTTTTTGTTTAAGGTAACTATATGCATCTCTTGATTTAAATAAAATGTGGCCTAACATGATAAACAAATGAATCAAACATGGAATTCACAAATATATATGAATAACACGCACTGTGGTAAACATGCACTGTTATTCCTTTGCGAAGAAAAGCATGCATTAACTACCAATGACAATGTCTCTAATTTTGTGATACCATTTGCATAACTCAGGATGAAATATTTATCAGACATGTTAAGTGCTTCATGACTGTTGGGCCATTCATCAGTGATATTGGTGTCATTCACAACACAATAAACTCAGTTTGTAGTCA

Function

NR:

description
grancalcin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23923 GCA; grancalcin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982850.1 False 1641 mRNA 0.44 9 18079991 18090210
XM_036982849.1 False 1685 mRNA 0.44 9 18079991 18090254
XM_021608685.2 True 1702 mRNA 0.44 8 18079991 18090271

Neighbor

gene id symbol gene type direction distance location
LOC110527421 NA coding downstream 139946 17934794 ~ 17940045 (-)
LOC110527099 LOC106575332 coding downstream 252642 17823526 ~ 17827349 (-)
LOC110527420 LOC106575301 coding downstream 276340 17755326 ~ 17803651 (-)
LOC110528801 LOC106575303 coding downstream 365057 17665513 ~ 17714934 (-)
LOC110527416 LOC106575305 coding downstream 417495 17536258 ~ 17662496 (-)
LOC110527425 LOC106575295 coding upstream 33677 18123948 ~ 18164002 (-)
LOC110527428 LOC106575293 coding upstream 83283 18173554 ~ 18176952 (-)
LOC110527429 psde coding upstream 88184 18178455 ~ 18193482 (-)
LOC110528804 mospd2 coding upstream 103753 18194024 ~ 18199581 (-)
LOC110527433 LOC106575287 coding upstream 155716 18245987 ~ 18256261 (-)
G581111 NA non-coding downstream 5786 18071210 ~ 18074205 (-)
G581105 LOC106575297 non-coding downstream 16624 18060114 ~ 18063367 (-)
G581091 NA non-coding downstream 35304 18044480 ~ 18044687 (-)
G581090 NA non-coding downstream 35692 18043932 ~ 18044299 (-)
G581087 NA non-coding downstream 39502 18040144 ~ 18040489 (-)
G581118 NA non-coding upstream 8965 18099236 ~ 18101432 (-)
G581124 NA non-coding upstream 17323 18107594 ~ 18107869 (-)
G581125 NA non-coding upstream 17603 18107874 ~ 18108078 (-)
G581134 adcy10 non-coding upstream 28365 18118636 ~ 18118925 (-)
G581135 NA non-coding upstream 29975 18120246 ~ 18121038 (-)
G581089 LOC106575297 other downstream 36611 18042927 ~ 18043380 (-)
G580487 NA other downstream 679455 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1279305 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1518846 16559930 ~ 16635251 (-)
G579278 NA other downstream 1614457 16464942 ~ 16465534 (-)
G581174 LOC101077481 other upstream 126887 18217158 ~ 18235038 (-)
G583661 NA other upstream 2125378 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2682596 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2748217 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 3331183 21421454 ~ 21424585 (-)

Expression


Co-expression Network