LOC110527428 (LOC106575293)


Basic Information

Item Value
gene id LOC110527428
gene name LOC106575293
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18173554 ~ 18176952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608690.2
CCACAGGTCTGAACTCGCTACCCAGTACCACCCTATGCTCTCCTCAAGTGAAGGGCTGAACTGAAAAGAAGAACCTAACACGTTCTAATAAAGAAACCACAGGGATGACAAATCTGTCAGACGCAGACGACTTTATCGACTCGGAGGACTCATTTGGTGACGGCGACAAGGGAAGCAGTAGGCAGTCTGCTCAAGAGACCGTCTGCGACAATCGTCATAACTTCCATGGATCTACAGAGGGACCGTATCCCTCGTCTCAGCCCAGCCCCAGCCAAGCTCAGTCCGCGTCTGCTGCCTCGCCTGGTACCATGTTCCCACACCGGACACTGCACGGAGCCACCTACCCTGCCCTCGCCATCACCAGTTCGGGTCACTACATGGCACACCATCCTGTGGTCACGCAAGGCTCATATAATAGCCTCTTGACCACTACGTCACCTCAAGGCTTCCCAGCGCCCGGATATTTTTACGCCCAGCCATACGGGCATGGCCACCAAGGAGGTGCTTTCCACAAGACCTCAGCAATGCAAACCGGGATGGTTTTTGGTAAAGCGCAAGTTTATCTCTGCAATAGGGCTCTGTGGCTCACGTTTCACAGGCACCAAACAGAGATGATCATCACTAAACAGGGGCGACGAATGTTTCCATTCCTGAGCTTTAATATATCTGGACTTGATCCGACGgcaaattacaatatttttgtgGACGTCAGTCTCGCGGACCCTAATCACTGGCGGTTCCAAGGAGGACAGTGGGTACCCTGCGGTAAAGCTGAGTCAAATGGGACAGGGAACAAGGCCTACATGCATCCAGACTCTCCGAACACCGGCGCGCACTGGATGCGTCAAGAAATTTCTTTTGGAAAACTGAAGTTGGCAAATAATAAAGGGGCATTGGAAAGTGCAGGGCAGATGGTTGTCGTTCAGTCCCTCCATAGGTACCAACCCCGTCTTAATGTGGTCGAGGTGCACGAGGATGGGGCCGAGAACGCCAGTCAACCCAGACAGTCATTTACGTTCCCCGAGACGCAATTCGTTGCAGTCACAGCATACCAGAACACAGACATAACACAGCTGAAAATAGACCATAATCCTTTCGCAAAAGGTTTTCGGGACAATTATGACAAAATCTACACAGGCTACGATAGTGACCGGTTGACGCCATCGCCGAGTGACTCGACCTACGCCCAGTTTGTGCCCGGTGCCAGATATGCACTTGCTAATTCTTTCCTTCAGCACCAATTCGTCAGCACTTATGCCAAGTCCTGTTTCCGCCCTAGCGCAGGAGCTACGTCTGGACTAGACTATAACGTCCCCTTAACTAACAACATGCTGTCACCGCAAACCAGCGAGGAGGACACGATGGCGGCATCCCCGAGATGGTTTGTGACACCGACCAACAACAGACTGGACTATGCCTCCCGCACAAATGACGCGACTGGAAACACGGCAACTTTGCTGTCATATGCAACAGCTGGAAAGGCACTACAGCTGTCCGCAACGGACAGTTCGGGTAGAGCCCTTACTTATTACGCAGAACCAACGGATTTTGCGCCTACCTCACCCCAGTATTGCGGTGCGCCTAGCCCGGCTCTGTCCTGCTGGACTAATGGACACGCTATTGGTACTGCGGACTTTGATGAGGTCCTCTCACTTTCAAAGGAGAGTTTGCCAACGAGTGTCTCTGAAGACGCAAAACCACAAGATATCTCGGAGTCTAGTTGGATAGAGACATCATAAACTGAATTGAAGAGATATCCCATCCTAGGTTATTGGCACCAGTCGAAATAGTCATCTGGAAATTGTTCATTCGTTTTTTCATTAGACTGCATTTTTGGATTAGCCTACAGTGGGCTGTGGATATGACTGAAGTATTAAAATGTTAACGACAAAATGGTCTATTTAAGCTATAATAATGTATCTATATAACATTAGCTGTAGTCCCACTCTAGATGTTTTCATTGAATCCTGTTTTCTAATTTGactgatttgattgattgattttgatttgttgaatacATTTCTGGAACGTGTTCATGTCTTA

Function

NR:

description
T-box brain protein 1-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608690.2 True 2043 mRNA 0.49 6 18173554 18176952

Neighbor

gene id symbol gene type direction distance location
LOC110527425 LOC106575295 coding downstream 9552 18123948 ~ 18164002 (-)
LOC110527423 gran coding downstream 83283 18079991 ~ 18090271 (-)
LOC110527421 NA coding downstream 233509 17934794 ~ 17940045 (-)
LOC110527099 LOC106575332 coding downstream 346205 17823526 ~ 17827349 (-)
LOC110527420 LOC106575301 coding downstream 369903 17755326 ~ 17803651 (-)
LOC110527429 psde coding upstream 1503 18178455 ~ 18193482 (-)
LOC110528804 mospd2 coding upstream 17072 18194024 ~ 18199581 (-)
LOC110527433 LOC106575287 coding upstream 69035 18245987 ~ 18256261 (-)
LOC110527432 tceanc coding upstream 75285 18252237 ~ 18254010 (-)
LOC100170202 NA coding upstream 120566 18244368 ~ 18299083 (-)
G581136 NA non-coding downstream 51057 18121847 ~ 18122497 (-)
G581135 NA non-coding downstream 52516 18120246 ~ 18121038 (-)
G581134 adcy10 non-coding downstream 54629 18118636 ~ 18118925 (-)
G581125 NA non-coding downstream 65476 18107874 ~ 18108078 (-)
G581124 NA non-coding downstream 65685 18107594 ~ 18107869 (-)
LOC110527435 LOC106574410 non-coding upstream 207760 18384671 ~ 18401796 (-)
G581257 NA non-coding upstream 210343 18387295 ~ 18388151 (-)
G581258 NA non-coding upstream 212964 18389916 ~ 18391076 (-)
G581089 LOC106575297 other downstream 130174 18042927 ~ 18043380 (-)
G580487 NA other downstream 773018 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1372868 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1612409 16559930 ~ 16635251 (-)
G579278 NA other downstream 1708020 16464942 ~ 16465534 (-)
G581174 LOC101077481 other upstream 40206 18217158 ~ 18235038 (-)
G583661 NA other upstream 2038697 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2595915 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2661536 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 3244502 21421454 ~ 21424585 (-)

Expression


Co-expression Network