LOC110527433 (LOC106575287)


Basic Information

Item Value
gene id LOC110527433
gene name LOC106575287
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18245987 ~ 18256261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608698.2
GTACAGGGAGGACGGACTGCGGCAGCGGGCCAAGCAAATCATTCAATAAGATCCAAAGGAGCCTGGTGCGAGTTTTTAGGAAGTCCTGTCATTCCTGGTTGCAGTTAGATCAGCACACTGGGGCCAGTCATTGTTGTGGTAGACCTACAGCTGGTTTTCCCCTTGACTAATCAACAGACCATCCTGACTCCACCCATCTCCTTCCCCATATTGTAGCATGATAAGGCCCACAGTAGGCGTGACAAACGATCGGTCATATGAGCGTCAGTAGCGCTCGAGCAGTCCTGCCCAGTAGCGCCAAGTCACCGGGAAACCTCGGCCGCTCGTAAGGATTTTGCAAAGGGATGGAGCGGTATGGCGACGCCGACGTACATTATAAACATCAAGGTGCTGAATTAGGCTATGGTTTGCCCTGATACATAACGGTAACAGCAGCGCttcccagacccccccccccccccccccccccccaagccagCTACTCCACCAACCCTTCAGCCCAGGCCCAGCCATGACAGCCAAGTCGTCCCTGCTCAAGGTGATCCTCCTTGGGGACGGAGGCGTGGGCAAGTCCTCCCTCATGAACCGCTACGTCACCAACAAGTTTGACACGCATCTCTTCCACACCATTGGCGTGGAGTTCCTAAACAAGGAGCTGGAGGTGGACGGGCGCACCGTGACGCTCCAAATCTGGGACACGGCGGGCCAGGAGCGCTTCCGCTCACTCCGGACACCTTTCTACCGTGGCTCCGACTGTTGTCTCCTAACCTTCAGCGTGGATGACAACCAGAGCTTCCACAATCTCAACAACTGGAAGAAGGAGTTTGCCTACTACGCTGATGTCAAGGAACCTGAGAAGTTCCCATTCGTGATCCTGGGTAATAAGTTGGATGTGCCAGAGAGGCAGGTTTCGGGCGAGGACGCCCGCCAGTGGTGCCGCGACAACGGCGGCCACCCGTACTTTGAGACGAGCGCCAAGGACTCGACCAACGTGGCGGCCGCGTTTGAGGAGGCGGTGAGGAGGGTGCTGGCGCAGGAGGAACGGGGGGAGCACCTCATCCCGACGGACACAGTGGACCTGCACAGGAAGCCGCGCTCTGGCGCCTCCTGCTGCTGAGGAGATGTAGGGTTGATTACCTTTATTTGActcttaaaggcccaatgcagctgtttttcaatttgaaatgcaaaaaaaatatttctcaagcaagaattttgctaagactgggaaaactagctgtttattggaagaggtttggaacagttttTGTTATTGGTATATTAACCAGTCTACCGAACAGTGATGTCACCATTGAAAGCTGAAACTCCCatccatgcaaacctgctgattataatgtcctgtgtagattgtattttcaaccaccaactatcaggaaataaacTGATCAAATTTTTTCACAATT

Function

NR:

description
ras-related protein Rab-9A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07899 RAB9A, RAB9; Ras-related protein Rab-9A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608698.2 True 1424 mRNA 0.53 4 18245987 18256261

Neighbor

gene id symbol gene type direction distance location
LOC110528804 mospd2 coding downstream 46406 18194024 ~ 18199581 (-)
LOC110527429 psde coding downstream 52505 18178455 ~ 18193482 (-)
LOC110527428 LOC106575293 coding downstream 69035 18173554 ~ 18176952 (-)
LOC110527425 LOC106575295 coding downstream 81985 18123948 ~ 18164002 (-)
LOC110527423 gran coding downstream 155716 18079991 ~ 18090271 (-)
LOC100170202 NA coding upstream 41257 18244368 ~ 18299083 (-)
LOC110527434 prps2 coding upstream 44130 18300391 ~ 18311994 (-)
LOC110528806 frmpd4 coding upstream 59155 18315416 ~ 18383323 (-)
LOC110527435 LOC106574410 coding upstream 128410 18384671 ~ 18401796 (-)
LOC110527440 LOC106575280 coding upstream 806568 19062829 ~ 19068838 (-)
G581136 NA non-coding downstream 123490 18121847 ~ 18122497 (-)
G581135 NA non-coding downstream 124949 18120246 ~ 18121038 (-)
G581134 adcy10 non-coding downstream 127062 18118636 ~ 18118925 (-)
G581125 NA non-coding downstream 137909 18107874 ~ 18108078 (-)
G581257 NA non-coding upstream 131034 18387295 ~ 18388151 (-)
G581258 NA non-coding upstream 133655 18389916 ~ 18391076 (-)
G581291 NA non-coding upstream 197127 18453388 ~ 18453682 (-)
G581293 NA non-coding upstream 198780 18455041 ~ 18455333 (-)
G581174 LOC101077481 other downstream 10949 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 202607 18042927 ~ 18043380 (-)
G580487 NA other downstream 845451 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1445301 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1684842 16559930 ~ 16635251 (-)
G583661 NA other upstream 1959388 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2516606 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2582227 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 3165193 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 3261134 21513832 ~ 21583054 (-)

Expression


Co-expression Network