LOC110527432 (tceanc)


Basic Information

Item Value
gene id LOC110527432
gene name tceanc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18252237 ~ 18254010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608697.2
TCTCGCGTCGCCTCTTCCTCTGTGCTACAATGTTGCAACAAGAGACAGTTGGACCccgcaaaacaaaacaaatatggcGGCTGACGGCTTAAGAACTGCAATTCGATTCGAGTTGTAGGCTGCGCTGTAATTTTCGAACCGAAAAGGGTCTCTAAGAATATGACCACCATGGACACAAAACAGATCACTCATCATGCTCTTCAAATGGACAAATTTAACAGGGCAGGTAACTATGGCAACATTATGCCTCTCCTCACCGCCCTTGTTAATGCCTGTGTGACTTGTGAGCAGCTGCAAGGCACAGACATTGTCAGGGTCCTTTACAGACTCCTCAAAACCTGCTCAGACAATTCAGTGAAAAAAACAGCCAAGCACCTGTTGTCAAAATGGAAGAAACTCTACAGTCACCCCTATCATATCTCAAAGGAGAATGGAAGTGAAGAAGAATTCACTGTCATTGGAGAGAGTATGCTGGCTGATAAAGCGTGTCTGGCAGGCAGAGGTGGCCTAGCTGCTGGTGATGCTAGTAAACCAGTGGAGTTGGGTGTGGTTTTCCATACTGGGTCAGAGGACAGAACACTCAAAAATGGGACCAAGTGTGGGAGAGCTAAGGGAGAAGGGTTGTCACTGTGGCAGGCAGCTGGTGATTTGTCTTCGGGGTCAATTTTGCCCACCCTCTCAAAGCAGTCAGAACCTCCTGCCACCACTTCCCTGGATACCCCTCCCCTCTGTAAGGATTCCTCTGATTCGGGTTTGAGGACAAAGTGCATCCAGCTTCTCCATGGTGCCCTCGATCCAGAAACTTCCAAGGAAGCAGAGGGGAAGACTGCAGATCTGGCCCGCGTCATAGAGGTGCACATCCACGCGCTGCACCGTGCAAACCAGGCCAAATACAAGGCCTGCATCAGGAGTAAGGTCGCCAACCTAAGGAACCCCAAAAACGGCCACCTTCGGTGTGGTCTCCTGGGCGGCAGCCTGGGGCCGGAAGTCTTCGCCGGGATGTCTTTGGAGGAGATGGCCAACGAGGAGCTCCAGCGGCTGAGGGAGGAGTACTCATCGCGGGGGGTGAGTGAGAGGCAGCTACCCCAGGGGGTGGAGGGGACGCCCACCCAGAAGCTGCGGTGCAGGCGGTGCGAGGGGTCGGACTGCAGAGTGACGCAGGTGTCCCGGAGCACTCTGTTTCTGCCGGCGTGGGTCCGCCAGGCCACCGCAGACCAGGATGCCATGACCTTTGTGACCTGTAGCAGGTGTGGGGAGCAGTGGTACCACAGCGGCTGGGTGTGCCTCTGATAGGCCATCCTCACCACACTACATGTAAAATGCCTGCTTTGTTTTTGTTGAGATTCTGTTGAAATGGCTTTACCCTATCAAACTGAATAATGTCATGTTTTAATCACAGAAATAAAGGTACATTTTACCACATGATTATGCAATACATTGTCATTAAACTTGCTGCACTACATACT

Function

symbol description
tceanc Predicted to be involved in transcription, DNA-templated. Predicted to be located in nucleus.

NR:

description
transcription elongation factor A N-terminal and central domain-containing protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608697.2 True 1466 mRNA 0.52 2 18252237 18254010

Neighbor

gene id symbol gene type direction distance location
LOC110528804 mospd2 coding downstream 52656 18194024 ~ 18199581 (-)
LOC110527429 psde coding downstream 58755 18178455 ~ 18193482 (-)
LOC110527428 LOC106575293 coding downstream 75285 18173554 ~ 18176952 (-)
LOC110527425 LOC106575295 coding downstream 88235 18123948 ~ 18164002 (-)
LOC110527423 gran coding downstream 161966 18079991 ~ 18090271 (-)
LOC100170202 NA coding upstream 43508 18244368 ~ 18299083 (-)
LOC110527434 prps2 coding upstream 46381 18300391 ~ 18311994 (-)
LOC110528806 frmpd4 coding upstream 61406 18315416 ~ 18383323 (-)
LOC110527435 LOC106574410 coding upstream 130661 18384671 ~ 18401796 (-)
LOC110527440 LOC106575280 coding upstream 808819 19062829 ~ 19068838 (-)
G581136 NA non-coding downstream 129740 18121847 ~ 18122497 (-)
G581135 NA non-coding downstream 131199 18120246 ~ 18121038 (-)
G581134 adcy10 non-coding downstream 133312 18118636 ~ 18118925 (-)
G581125 NA non-coding downstream 144159 18107874 ~ 18108078 (-)
G581257 NA non-coding upstream 133285 18387295 ~ 18388151 (-)
G581258 NA non-coding upstream 135906 18389916 ~ 18391076 (-)
G581291 NA non-coding upstream 199378 18453388 ~ 18453682 (-)
G581293 NA non-coding upstream 201031 18455041 ~ 18455333 (-)
G581174 LOC101077481 other downstream 17199 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 208857 18042927 ~ 18043380 (-)
G580487 NA other downstream 851701 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1451551 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1691092 16559930 ~ 16635251 (-)
G583661 NA other upstream 1961639 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2518857 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2584478 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 3167444 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 3263385 21513832 ~ 21583054 (-)

Expression


Co-expression Network