LOC100170202


Basic Information

Item Value
gene id LOC100170202
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18244368 ~ 18299083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001129982.1
ATGTCTGACAAGCCAAATCTCGAGGAGGTTGCCAGCTTCGACAAGACCAAGCTGAAAAAGACCGAGACACAGGAGAAGAATCCGCTGCCGACTAAAGAAACCATTGAACAGGAGAAGCAGGCATCGTGA
>TU663143
GACACATTGCTGCAACGCAAAGCCTGGAGAAGTACCACTAGTCAATCAGTCCAACTTTGACACTTCGCAATCATGTCTGACAAGCCAAATCTCGAGGAGGTTGCCAGCTTCGACAAGACCAAGCTGAAAAAGACCGAGACACAGGAGAAGAATCCGCTGCCGACTAAAGAAACCATTGAACAGGAGAAGCAGGCATCGTGAAGACCATCCCTCCGTCATGCACTGTAACCCCCTCCTCCTGCATTGCCTTCTTTTCACTCACTTATTTTTAGCTGTATAACTTGTCAAGAAAATCCACACCAACAACACAAAGCTGCACTGCGATGGATGACCATCCATGTCCAGGCGCTGACCccacccctcctaccacctccaccaATAGAGGAGCAGGCCCTCGCCAGGCCAGGAATGAGGAAGTACTACCAACCAACCAGGGGCGGTATGGTGGACGGGCCCAAAGGTGTGGGTTGTGGTGTCCAAACATCAATACTGGGTAGAGAGGGCTACAGGATGTGGGCGTGGTCTTGGATCTAGGAATTTACATCCCTCGTTCGACATCCAATTTCCTGTGTGGCCTCTTGTCGACCTGGTAACACACGCCTCAATCGTGTCCGGCTTCTTTTATTTCATTTTCGGGAAAAATGCACaacctttttttgtttttacgCTGGTAATATGATTAACATACCCATCGGTTAATACAAGTTTTctgtcagatatttttttatcgAACCAAGGATGAAAAAACGGAAACCATCTAGTCTTCGGAGATACTCGTGTGGATTTTATTTACATTGATGTTTTTAAAACGTTATTGTACGATGACCTTTTTTATCAATGTGATTTGGGATAAGCTTTTTTTGTGTTGCACCCTGTCTCTGAATTGTTTAATATTGTAAGGAAAACATATCATTACTGGAAATGAATTCCATGTGTTCTGCGTCGATCAAATTATTTGGAGTTTTCTAAAGTCCCAACTCATGTTAATCTGCCACATACCTTTACCAAGAATGGAAACAGTGAAATGTTGtaataaaaaaatTTGTTTCTATGTTTTGCTGTAAAACAAGACCAACCATGACACACTAAAAACTGTAGGCCTATTATACTTTtgtttttatgtaaaaaaaatattgttggtTATTTGTCAAAAGACCCCCAATAACAGTGATGTTACCAGTATTCAAATGCGAACCAGTAATTTctacagcagggttccccaatTGGTAGCCCACGGCACACC
>TU663142
GACACATTGCTGCAACGCAAAGCCTGGAGAAGTACCACTAGTCAATCAGTCCAACTTTGACACTTCGCAATCATGTCTGACAAGCCAAATCTCGAGGAGGTTGCCAGCTTCGACAAGACCAAGCTGAAAAAGACCGAGACACAGGAGAAGAATCCGCTGCCGACTAAAGAAACCATTGAACAGGAGAAGCAGGCATCGTGAAGACCATCCCTCCGTCATGCACTGTAACCCCCTCCTCCTGCATTGCCTTCTTTTCACTCACTTATTTTTAGCTGTATAACTTGTCAAGAAAATCCACACCAACAACACAAAGCTGCACTGCGATGGATGACCATCCATGTCCAGGCGCTGACCccacccctcctaccacctccaccaATAGAGGAGCAGGCCCTCGCCAGGCCAGGAATGAGGAAGTACTACCAACCAACCAGGGGCGGTATGGTGGACGGGCCCAAAGGTGTGGGTTGTGGTGTCCAAACATCAATACTGGGTAGAGAGGGCTACAGGATGTGGGCGTGGTCTTGGATCTAGGAATTTACATCCCTCGTTCGACATCCAATTTCCTGTGTGGCCTCTTGTCGACCTGGTAACACACGCCTCAATCGTGTCCGGCTTCTTTTATTTCATTTTCGGGAAAAATGCACaacctttttttgtttttacgCTGGTAATATGATTAACATACCCATCGGTTAATACAAGTTTTctgtcagatatttttttatcgAACCAAGGATGAAAAAACGGAAACCATCTAGTCTTCGGAGATACTCGTGTGGATTTTATTTACATTGATGTTTTTAAAACGTTATTGTACGATGACCTTTTTTATCAATGTGATTTGGGATAAGCTTTTTTTGTGTTGCACCCTGTCTCTGAATTGTTTAATATTGTAAGGAAAACATATCATTACTGGAAATGAATTCCATGTGTTCTGCGTCGATCAAATTATTTGGAGTTTTCTAAAGTCCCAACTCATGTTAATCTGCCACATACCTTTACCAAGAATGGAAACAGTGAAATGTTGtaataaaaaaatgtgtttctATGAAGTGAA

Function

NR:

description
thymosin beta-11

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001129982.1 False 129 mRNA 0.50 2 18297518 18298064
TU663143 False 1243 lncRNA 0.43 4 18244368 18299083
TU663142 True 1060 lncRNA 0.43 3 18296659 18299083

Neighbor

gene id symbol gene type direction distance location
LOC110527433 LOC106575287 coding downstream 41257 18245987 ~ 18256261 (-)
LOC110527432 tceanc coding downstream 43508 18252237 ~ 18254010 (-)
LOC110528804 mospd2 coding downstream 97937 18194024 ~ 18199581 (-)
LOC110527429 psde coding downstream 104036 18178455 ~ 18193482 (-)
LOC110527428 LOC106575293 coding downstream 120566 18173554 ~ 18176952 (-)
LOC110527434 prps2 coding upstream 2327 18300391 ~ 18311994 (-)
LOC110528806 frmpd4 coding upstream 17352 18315416 ~ 18383323 (-)
LOC110527435 LOC106574410 coding upstream 86607 18384671 ~ 18401796 (-)
LOC110527440 LOC106575280 coding upstream 764765 19062829 ~ 19068838 (-)
LOC118965376 NA coding upstream 844082 19142146 ~ 19145574 (-)
G581136 NA non-coding downstream 175021 18121847 ~ 18122497 (-)
G581135 NA non-coding downstream 176480 18120246 ~ 18121038 (-)
G581134 adcy10 non-coding downstream 178593 18118636 ~ 18118925 (-)
G581125 NA non-coding downstream 189440 18107874 ~ 18108078 (-)
G581257 NA non-coding upstream 89231 18387295 ~ 18388151 (-)
G581258 NA non-coding upstream 91852 18389916 ~ 18391076 (-)
G581291 NA non-coding upstream 155324 18453388 ~ 18453682 (-)
G581293 NA non-coding upstream 156977 18455041 ~ 18455333 (-)
G581174 LOC101077481 other downstream 62480 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 254138 18042927 ~ 18043380 (-)
G580487 NA other downstream 896982 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1496832 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1736373 16559930 ~ 16635251 (-)
G583661 NA other upstream 1917585 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2474803 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2540424 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 3123390 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 3219331 21513832 ~ 21583054 (-)
LOC110527425 LOC106575295 coding downstream 80366 18123948 ~ 18164002 (-)
LOC110527423 gran coding downstream 154097 18079991 ~ 18090271 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location