LOC110528806 (frmpd4)


Basic Information

Item Value
gene id LOC110528806
gene name frmpd4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18315416 ~ 18383323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982858.1
ATTAGCAACGCCCTCACCTCACACAACTCCTCACCTCTTTCTTTAGTTTCATCTCTCCTTTCttactctcatccctccatctcaccatcaTTCTCCAGCGTGGCCATCGGGGCATCATGAAGGGTGGTGATGGAGCGCAGGCCGGAGAGAATAGAGAATATGGACACTAACCCCAGTGTTGACGTGTCAGCGATGGATGTGGGGTGGCAGGAGACAGCTATTACCCAGCAGCCTGCAGACCACAAGACCAAATCATCGGGCTGGCCTCCCCCCTCTGGATCCTGGGGCTCCCTGCCGGGACCCCCCTATGGCTGGGACATGGGCTCTTACAGGGACGGCCGAGACTACTTCAGCAACCACGTGTCCCAGAGCAGCTCCCTGGAGGAGGTGCACCGTCTGGATGGGGTGCAGCTGGTGCCCCCTGACCCCCGGCTGGTGGAGATGAGACGGGACCCTGTCCTGGGGTTTGGCTTCGTGGCCGGGAGTGAGAAACCGGTGGTGGTACGCTCTGTTACGCCTGgagGTCCCTCGGAGGGAAAGCTGATCCCAGGAGATGAGATCATCATGATCAACGACGAGGCAGTCAGCTCAGTGCCCAGGGAACGAGTCATCGACCTCGTCAgAAACTGTAAGGAGTCCATTATGTTGACTGTTGTCCAGCCGTACCCTTCGCCCAAATCAGCGTTCATCAGTGCAGCCAAAAAAGCCAGGCTCAAGTCCAATCCGGTCAAAGTGCGCTTCGCAGAAGAGGTCATCATTAACGGTCAGGTTCCGAACACAGTGAAGGACAACTCTCTCCTCTTCATGCAGAACGTTCTGAAGGTGTACCTGGAGAACGGGCAGACCAAGTCGTTCCGGTTCGACTGCAGCACATCCATCAAGGATGTTATCATGACCTTACAAGAGAAGCTGTCCATCAAGTGCATTGAGCACTTCTCCCTGATGCTGGAACAGCGGACGGAGGGATCGGGCAGCAGGCTGCTACTGTTGCATGAACAGGAGATGCTAACTCAGGTGACACAGAGGCCGGGGTCTGATAAGATGAAATGTTTCTTCAGAATCAGCTTCGTCCCCAAGGACCCGGTGGATCTGCTCAGACGGGATGCCGTGGCATTTGAATACCTCTATGTTCAGAGCTGTAACGATGTGGTTCTGGAGCGCTTCGGCTCGGAGCTGAAGTACGACGCCGCGCTCCGATTGGCCGCTCTGCAGATGTACGTCCTCACTATGACGACCAGGCAGACGCAGAAGGTCTCGCTCAAATACATCCAGAAGGAGTGGGGTCTGGCCCTTTTCATCCCACCAGCGGTGATGACCAGcatgaaggagaagaacatcaagAAAGCACTGACGCACATCCTCAAAACCAATCAGAACCTAGTGCCTCCGGGAAAAAAGTTGACTGCGTTGCAGGCAAAGGTGCACTACTTGAAGTATCTCAGTGAGCTGAGGTTGTATGGAGGGAGAGTGTTCAAATCCATACTTTTGCAAGGGGAGAAGCAGACAGAGGTGACCTTGCTAGTGGGGCCCAGGTACGGCATCAGTCACGTGATCAACACCAAGACCAACCTGATGGCCCTGCTGGCAGACTTCAGCCACGTGAACCGCATCGAGATCCTCACAGAGGATGATATCAACGTCCGCGTGGAGCTACACGTCATGGATGTCAGGCCCATCACATTGATAATGGAGTCCAGTGATGCCATGAACCTGGCGTGTCTGACAGCAGGGTACTATCGACTCCTAGTGGACTCTAGGAGATCTATCTTCAACATGGCCCACTGCAACAGCATTGCTGAAGAAATGGATCAGGACAATCTTCTGGAGTGGCCGTACAGCACTTCGTTAGGCAACTGTGAGGACCCCAATGCTGCCGGCCAGGATGAGCATTACAGCAGTGACATGGACTTCTCTaacaatggagggagagagaacaacatCTCTCCCCACGTTCCCGAACCCCAAAACCATACCCTAACCCTGCAGCAGAACGAGAGGCCATCGGAGGGGCGGAGGAGTCCCCAGCCCCCACCTCTCCCCCCCGCCAGAAACAAACCCAAAGACTCCCCCCGGAGCGCCAAGGTCTCCTTCATCTTCGGAGACCCCCCTTTGAACACTGTGAACCCCCAGAACTTAGGCTACGAGTGCCTGATGGATGAGAGTCCCGAGGTGCCCGAGAACAGGCCCATAGCCTACTTGCACAACAACGTCAACAACACGGGGGACTTCAGGACCCAGGTGACCGTGCCCTATCAGTTCGCCGACGGCAGTCCGCATGTGGTCTACAGCAACATCGGCGAGGAGCTGGTGGAGGAACCGCTGCTCAGGGACCTTTGTTATGCAGACACCACGGACGACGCCGAGGATGAGGACGACGCCAGCTGTGAGGAAGACTCtactggggggggagggggggaggatggCGGCAGAGGTGGAGAGGGCGGCTCGACGGTGGCAAGCAAAGCCACGTTCCTCACCCTCTCAGGCTCCAGCGATGACATCATCGACCTGACCTCACTTCCTCCACCCGAGGGGGGCGATGACGAAGATGATGATACTGACGGCGTCCTCCATTCCCTAAATCTCGCCATTGCAGCCCCGCCCCCGGGGTTCAGAGACAGTTCTGATGAGGAAAGCCCCGAGGGTCGCCCTTTGGCCACTGCTGACAACGATGACATGCCCGTGTCGCTGATCGACGCTGTCCCCACGGGGTCGCGTGTCGAGGGGAGCGGCGGGGAAAGGAGGCTGGAGGATGCCATGGTGACAACCCTGCAGGCACTGGAAGCCCTGACAGTGTCCGAGGAGAGGCCACGCCCACCACGCCCACAGCGACCACAGCCCAACAGTAACCCAGGTGTGCATATGTCTCGGGCTTTCAGTCCTGAGTCTTCCTCTGACTCAGGCAACGAGACCAACTCCTCAGAGATGACCGAGACCATGGAGCAGGCCGCCGCCCACAAACTCATCCACGAGAACCACAGGCGCCTCCTTATCGCCACCTCCGAGGGCTACCAGCCTCTGACGGAGGAAAAGACAGACTTCCCTGTCTCACCCAGAGTGGCCACCCAAAAGAAAGCCCACAGCCCCTCCCACCATCGAGACAGCGGGCCGCCGTCGTCCACCGCACTCCCTAAACAGACCCTCCATCCAGATGGCATAGAGCTGGATCCAGAAACCACTGATTCTCTGACTAACCTCTCCTCCGGCTTCAGCAAGCGACCCAACTCTGTGGTTGTTGGAGGGAAACGGCTAAAAAAGTTGGCCGACACCAACGGGAAGTTCAACACGTTCAGTACCAGAGACGGCCACAGGGGGAGCCAGCTGGATGTGGAGCGTACCTCGTTCTGTGAGAGGTTGCAGAGAAGGCCGCCTCTTCCTCTACCAGAGAATTCCATCTCCATCATGGCAGAGAACCTGCCGGTGAACAGCCTGCCGAGGAGTCACCGCAGGCTGCCgtgcccccctcccccacaccctGAACGGACAGAGCCTGTGGAGGAACTTGGGGAGGCTGCAGGGGGGGACACTGGGGCGATGGGCGGCCAGGAGGAAGAGTACCTGGGGGGAGCGGCAggtcccttcccctcctcccctaccAAGAAGCCCCGGGACCCCCCCGGTGGACAGGGAGATGCCCCAGGGGAGCAGCTGCAGCAAGTCAGGCAAGGAGTTGCCCGGCTGTGTGAGTACCACCTAGCCAAACGGATCTCGTCCCTCCAGAGCGAGGCCCACAACTCCCTGCAGGGCTCCCAGTGCTCATCACTGGACGCGGGCTGCAGCACGGGGAGCAGCGCCTGTGGCACCCCAACGGATTCGCCCCTCTGTGCCCCTGACGGCAACCACCATCCACTCTCTGAATCTTCCACATCCCTCAGGGTTTTCACCTATGAGGACAAGGCTCCCCATGGCACCCCGGGCCAGATCCCTGGGGGCAGAGACCTCCACCCCCAAGCAGACCCCACACTCCTGCGGAAGATGCTGCCCAACATACACCCTCCTGGGTCAGACACCAGCAGAGAGGGTTCCATCCGGTCGGCCAAGATGAAAGAAACCACAGGTAGTACAGCTAGAAGGAGTAACCTTCAAAATGATCTGCATGCCAAGACAGCCTGTGTAAGGGGTGCTAACTCCAAGGAGGGGAATGAGTCCTATAGGCAGCTCATTAACTACCTGACAGTGAGCCAGATGCATCAGGGAGGCAGGTTGCACAGTGCAGGCCTGGGAGGGGGAGTCAGAAAGGACACTAGGAGATATATTACCAGTAATCCCCAACTGATAGAGATGGTTAGGAGTAAAGGGAACACCATTCACCGCTATCCCTGCATGCCCTCCTCGTCCTTCCTCAGCCCGAGTCTAGTGAACCCCAATGCAGCCACCTCACGGGGTGACAAAGGCTCCCGACCATATCACTCCGCCACGCTGCCCACTAAGTTGAAGAGCAATCCTGACTTGCATGCTCAGAGACCTGCTGACAGTCTTGAAGTAAGGCCCAGTGGCACAGAGAGGAGGAGCTCCTTTTCAGGCCTTGAGAGTGAGTTAGAGAGGGGCGCCATCGACCCTGAGGTCGAGCGGTTCCTGTCTCTGAGGGACAGCATCCATGGAGGGGGTGGGGGCAGGCCCCCCTCCAGAGCGCGGAGTGTGATGTCCCAAAGCGGTGCCAGCATCTGTGGCCCAGAGGACTGGCTCAGATCTGACTGCAGGACAAAGCATGCCGTCCGACAGGCTCTTAAcgattctctctgtttctctactgCCCCTAGTGTAGCTCGCACAGAGCAGCTGGGGACGTCACTGGGAGCGGAAGCAGGAGATCACCCATCAGCTTTCACTAAGCAGGCCCGAGCCTGTGCCacggctcctcctcctcctccaccacctcctccacctcccctacCAGCCAACATGAGAACCCACAACTCCACTGTGCCAAAGCAGGAGTCCACCGTCACATACAGACAAAACCACATCCAGTCAGTCACAGCCAGCCTCCACCACCAGTGCGAGCCCAATATGAACAGCCTCCAGCGGGGCAGGGACCCCAGTGTGAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTGCAGCGGGGCAGGGAGCTCAGGCGGAGCACCAGTAATGTAACTGCGGGCTGCGGGAGTGTGGAGGTGCTCTTCGACAAAGGCAGAACTAAGTGCCAGCAGCAACAAAGACCAGTTGACCCCAAACTACAGAGGAGACCGACGAGGAAGAGGCTGTCGAAGAGCTACTCGCAGGGCTCGGTAGCGTCCACCTGCTGGTCGGCTGGGGGCAGAGACAGCCGGAGGGCCTCAGTGATGTTCCCCCTGCAGAAGGACACCAAGCACATGAAGGGCTCGCAGAAGCTGGACTCGGGCAGCCCTTGGAGGTGCCATGGTCCCTTCAGCTACTGCTTCTTCAAGAGGAAGAGCCAGGCGGATGAGGATGAGGTAGAGGGAGACGAGAGGGACGAGAGGGGCGAGAGGTCCAGGCGCAGCCGTGGCGGGGAAATGGAAGAAGCAGCGTCTAGCTACGGCCCGGCCATGGACGCAGCAGGCGACCAGCTCTACAGCGAGGTCCTGACCAACATGAGCTTCAGCGACCGGCTGTCGCGCATCAACACGCTCAAAGACCGCATGTATGTCTTCCCCGTTGGCTTCTCGGATGTACACCGCGACGCCAGCGAGCTCATCGCTCTAGTGCGCTCAAGCGTAGGCAGGGGGGACCGCAGCGGGCAGGTGCCACAGATCACAGCAGACCTGTCCCAATACAAACAGCTGCTGTCCATCGAGTCTAAAGAGCTGGGGCGGGCATGTCGCAGGATGGCCCAGGCCCACGGCAGCCCAGAGGAGATGCTGCTGGCCATCACCTGCAGTTTCCAGGTGCTGTGCTGCCTGTCTGAGGCCTGCATGTGCCTGGTGAGGGGCCTGGGGGCATCAGCCGCCCAACAGCAGAGGGAGGTGGTGGGCAAGGTGGACGAGCTGGTCATGAACTACATCTGCCTGTTGCGCGCAGCCGAGGTGGCGTCCATCGGAGCGCCCAGCGACCACAGCGTCAATGCCCTGGTCCGCCACTCCAGCACCATGTCAGCCATCGCCAACGCACTCACCCGCTCCCTCAAAACGCTGCTTAGCAAGTAGTAGGACGGCCAGCCGGCGGCACCATCTTTTAGTGTTATGTACATTATACAAAGCCATACAAGTCCAGAACTTTGTAATAAGAACTGATGTTATTATAGACACCCTTCTTCCTGTGTACATTTTTTTTCCATGTATataatgtacatacagtacatatgatACACTATATGAATATATAAATTACTAAAGATATTTTGAGTGGTCATTGGGAAGACATGTACTCTTTAATGTGATATTGACGATGCAGTTATAGGTTGCAATGTGGAGAGGATTGATGTACCGTAGCACTGAAATTGCACTGCATTTAACACTCCTTAGTGTAATTTCTAAATtattttgacatgtttttttttaaatacagaggGCAAAAACATATAATGAAAAGACATAAAATATGTAAGCAACTATCTTATTAAAGCGCTTTTAAGTCAGTGTGTAATGTttaataatttttaaaaagtTATTTCATTGTATTTGTTTTAATATGATCCTCTCTGGACTCAATGGTGTCCTTCAACAgctatagttgaagtcggaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaatatttcttgttaacgaactatagttttggc

Function

symbol description
frmpd4 Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 104. Orthologous to human FRMPD4 (FERM and PDZ domain containing 4).

NR:

description
FERM and PDZ domain-containing protein 4-like

GO: NA

KEGG:

id description
K23956 FRMPD4; FERM and PDZ domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982858.1 True 6896 mRNA 0.57 16 18315416 18383323

Neighbor

gene id symbol gene type direction distance location
LOC110527434 prps2 coding downstream 3422 18300391 ~ 18311994 (-)
LOC100170202 NA coding downstream 17352 18244368 ~ 18299083 (-)
LOC110527433 LOC106575287 coding downstream 59155 18245987 ~ 18256261 (-)
LOC110527432 tceanc coding downstream 61406 18252237 ~ 18254010 (-)
LOC110528804 mospd2 coding downstream 115835 18194024 ~ 18199581 (-)
LOC110527435 LOC106574410 coding upstream 1348 18384671 ~ 18401796 (-)
LOC110527440 LOC106575280 coding upstream 679506 19062829 ~ 19068838 (-)
LOC118965376 NA coding upstream 758823 19142146 ~ 19145574 (-)
LOC110527100 NA coding upstream 762434 19145757 ~ 19154599 (-)
LOC110527441 NA coding upstream 792712 19176035 ~ 19181090 (-)
G581136 NA non-coding downstream 192919 18121847 ~ 18122497 (-)
G581135 NA non-coding downstream 194378 18120246 ~ 18121038 (-)
G581134 adcy10 non-coding downstream 196491 18118636 ~ 18118925 (-)
G581257 NA non-coding upstream 3972 18387295 ~ 18388151 (-)
G581258 NA non-coding upstream 6593 18389916 ~ 18391076 (-)
G581291 NA non-coding upstream 70065 18453388 ~ 18453682 (-)
G581293 NA non-coding upstream 71718 18455041 ~ 18455333 (-)
G581174 LOC101077481 other downstream 80378 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 272036 18042927 ~ 18043380 (-)
G580487 NA other downstream 914880 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 1514730 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 1754271 16559930 ~ 16635251 (-)
G583661 NA other upstream 1832326 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 2389544 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 2455165 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 3038131 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 3134072 21513832 ~ 21583054 (-)

Expression


Co-expression Network