LOC110527438 (LOC106575281)


Basic Information

Item Value
gene id LOC110527438
gene name LOC106575281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18523603 ~ 18581511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608707.2
ggctccgtctctctctctctctctctccctctctctctctctctctctctctctctatctctatcgtGCCGTGCTTCATTGTTTTCCCAGGTTGGTCATCCTACGCTTGTCTGTTCTCGGTTGGAGGATCACGAAAGAGTCTTGAATATAGCTGAGCAGTTACCCTGGATTTCGCTGACACGCCCGCGCCTGAGTTCCACCTGAGAGGATGGACGCGCTGGAGTCAGAGCTGACTTGCCCAATCTGCCTCGAGCTCTTTGAGGACCCACTGCTCCTGCCCTGTGCCCACAGCCTGTGCTTCGGCTGCGCCCATCGCATCCTGGTATCCCACTGCGCCTCCAACGAGCCCGTCCAGTCCATCGGAGCCTTCCAGTGCCCCACCTGCCGCTATGTCATCTCTCTCAGTCCGCAGCGTGGCCTAGAAGGACTGAAACGCAACGTCACCCTCCAGAACATCATCGACCGCGTCCAGAGGGCCGCCTCCTCCGGCCCCCTGGCCCTGCTGCCTCACAGCGGGCCCAACTCCCCTAGCGAGGACGCCGGGCGATTCGCCCTGGCCCTGGTCCCCGCCTCCACCGCCATGACCAGCCCCGGGACGCCGCCCAGCCACGTGCAGTGCCAGTTCTGCGAGCAGGACCCGCCGCAGAACGCTGTCAAGACGTGCGTGACATGCGAGGTGTCATACTGTGACGAGTGCCTGCGTGCCACGCACCCCAATAAGAAGCCCTTCACGGGCCACCGTCTGATTGAGCCCATGCCGGACTGCCACCTGCGGGGGCTGCAGTGCCTGGAGCACGAGGAGGAGAAAGTGAACATGTATTGCGTCACCGACGAACAGCTCATCTGCTCGCTGTGCAAACTGGTGGGAAGACACCGAGACCACCAGGTGGCGGCCTTGAGCGACCGCTTCGAGAAACTCAAGcaAGCGTTGGATTCCAACCTGAGTCATTTGGTCAAGAGGAACAATGAGTTGGAGGGGTTGATGGGAAAGTTGATCCAAACCTGTCAACATGTAGAGGTCAATGCATCGCGGCAGGAGGGAAAGCTGATGGAAGAATGCGACCTCCTGATTGACATCATCCAGCAAAGGAGACAGATCATTGGGACCAAAATCAAGGAGGGGAAGGCAGTCCGGATCAGGAAGCTAGCCCAGCAAATCTCCAACTGTAAGCAGTGCATCGAAAGGTCCTCTGCTCTCATCACCCAGGCCGACCAGACCTTGAAGGAGACGGACCACGCCCGCTTCCTCCAGACCGCCAAGAGTATCACCGAAAGGGTTTCCATGGCGACCGCCTCCTCTCAGGTCCTGATTCCAGAGATCAACCTGACAGACACATTTGACACGTTCGCTCTGGACTTCACCAAGGAGAAGAAGCTGCTGGAGAGCCTGGACTACCTCACAGCGCCAAGTCCTCCGGGCATCAGAGAAGAGCTCTGCACTGCATCGTACGACACCATCACCGTCCACTGGACCTCAGACGACGAGTTCACAGTGCTTTCCTATGAGCTCCAGTATGCTATCTTCACAGGGCAAGCCAACATTGTCAGCCTGTGTAACTCAGCAGACAGCTGGATGATTGTGCCTAACATCAAGCAGAACCACTACACCGTCCACGGCCTGCAGAGCGGCACCAAGTACATCTTCATCGTCAAAGCCATCAACCAGGCAGGTGCCCGCAGCAGTGAGCCAGGGACACTCAAAACCAACAGCCAACCATTCAAGCTGGACCCCAAGTCCGCCCACAAGAAGCTTAAGGTCTCCCATGACAACCTGACGGTGGAGCGCGACGAGACGGCATCGAAGAAGGGACACGGCCAGGAGCGCTTCACCAGCCAGAGTAGCTACGGAGTCGTCGGCAACGTTTACATCGACAGCGGACGCCACTACTGGGAGGCCCTGATTGGAGGAAGCACATGGTATGCGGTGGGCATCGCCTACAAGTCGGCCCCCAAGCACGAGTGGATCGGCAAGAACTCGGCTTCCTGGGTCCTGTGCCGCTGCAACAACTCGTGGGTGGTGCGCCACAACAGCAAGGAGCTGGCCATCGAGCCTTCGCCCCACCTGCGCCGCGTGGGTGTCCTGCTGGACTACGACGCCGGCTCGCTTTCCTTCTACGACGCCGTGGGCTCGCAGCACCTGCACACGTTCCACGTGTCCTTCGCCCAGCCCGTGTGCCCCGTCTTCAACGTGTGGAACAAGTGTCTGACTGTCCTCACGGGTCTGCCCATCCCTGAACACCTAGAAGGGTTGGAAACCCAGAACTGAGACCCCCTGGGAACTAGAATTCCCCCTGGCCAAACCAGACTAAGTTGGTTTGGGTTAGGTTAAGCCACCTTCAAGGCACTTTGGGCCTCTATGAACTAGCAAAGGTCGTCTTCAATCTGGAATCATCTCAGAAAACGTCATGCTACCAcctcatttcatttcattttagGCACTTTGGACCACCCCTTGGGCCAACGTCAATCACACAGACCACCCTCTATTCATCTACAGAACGCTGTTTGCAGTGGGAAAGAAGGAAAAAGCTACATAGCTGTACAGTTGTGAATTATAGCATTGcccaacacacacattcatgatTATGGAACCAAAGTAGCCATGAATTTAAATgattttattactattttcttGTGCTTATATGATAGATATTCATTATTGAAGTGTAAGAAATTAGGCTAGATAAATTCCAATATGTACAATTTCCCTTATGTTTACACATTGTTCATACATTATTTATGGTCAGTTTACCAGGGATAGGATACATTTATAAATCTAGGGAAATTATTTTGATGCAATTTATCGATGTTACTTTCTAATCTAGAAAAGGTATTGTGTCCTAATACATTCATGTGTAAATTATACATATTTTGTGACAACATAATTACTTTCTTCCTTACAATACCTTAAACCCACAAGTGTAAAAGTACTGTCGCATTTTAGACAAGCAGGGAAACACAACAAATTGCGTGTTTAATTTTTGTCATGTTTTGTCCTCTTTGCAATGGGATAGGTCCTTTGTTGTTCAGCCATGCATGTTAGTGAGAATCTCTCAGGTCTATTCCAAATCCTGTTTTCATCCATGAAAATAATGCAAACTACTTTGTCCTCTCCTGAGTGAATACTAACCCCCTACTGTCCTTAGCAGTTGTCACAAACCTAAACTGAAAAACACTTCCACTGTGTTGTTAGGTACAGTGAGGACAAGACTATTACAATAATTTCTCTATTCAGGTCCAGTGGCCGCTGGGAGGTACATTTCAATGACAACAACCATGCCTCTGGGCATTTGTCATCCATATGTCACACAGGGAAGCACCACACTTACAAACTCGGTCATTATTTCACCAACGTCGATGCCACCTCGAGCCACAGCTTGACCTCAGCTTGACCACTGTATGACCCAGTGACCATGAACTCAAACGTCTCGCCACCACAAACAGGAACTCCATGATGTACATAGCATATTATGTTCTCTTTATTCTGTCTTCTTTCGAAAGAAGGACCATCTGGATATTTTACAGACCATCCTTAAGTTTTTAAAGGAACACAATGGATTGGTTCACTCATTAATATGTGTCTTAGGTTTGGGATGATCTGTTTCCTTGTAATGGATGCAGCGATTATCTGCTCTTTAATGTTGCCACAGAAACTGTTTCAATTCAGTTGTATGTTTGAATCCGGTGGACACTATTTTAGGAAAGAGGATCGGAATGCTTGTGTCTCTGTACAAATATGAAGTAGCATTTGTCGATTGTCAAAGGTTCAATAAAGAAAGATACCATTTAACTT
>XM_021608705.2
CTCCTCCTGCCTGCGTGTTCTCACTGGGCTGGGGAGAGGAGCGGCTTTAGGGTGCGAGGAAATATGCCACGAGAGGCGATGTGACAGCCAGAGACAGACGTACACTGACACAAAGTTCCCCCAGTCGGACTGGAGTATAGCAGGTCGACTACTGCTGCAGCTGGTCTGTTGTTAACGGAGAATGAAGGGCCTCCTCTGACCTGACGGTTCAGCAGCTCAGTTCAGCTCTCTCATTTCTTCTTCCTCTCTTATTTCACTTTGTTGATGGACAATGGGATTTTAACCatgtggcagATAGCTGAGCAGTTACCCTGGATTTCGCTGACACGCCCGCGCCTGAGTTCCACCTGAGAGGATGGACGCGCTGGAGTCAGAGCTGACTTGCCCAATCTGCCTCGAGCTCTTTGAGGACCCACTGCTCCTGCCCTGTGCCCACAGCCTGTGCTTCGGCTGCGCCCATCGCATCCTGGTATCCCACTGCGCCTCCAACGAGCCCGTCCAGTCCATCGGAGCCTTCCAGTGCCCCACCTGCCGCTATGTCATCTCTCTCAGTCCGCAGCGTGGCCTAGAAGGACTGAAACGCAACGTCACCCTCCAGAACATCATCGACCGCGTCCAGAGGGCCGCCTCCTCCGGCCCCCTGGCCCTGCTGCCTCACAGCGGGCCCAACTCCCCTAGCGAGGACGCCGGGCGATTCGCCCTGGCCCTGGTCCCCGCCTCCACCGCCATGACCAGCCCCGGGACGCCGCCCAGCCACGTGCAGTGCCAGTTCTGCGAGCAGGACCCGCCGCAGAACGCTGTCAAGACGTGCGTGACATGCGAGGTGTCATACTGTGACGAGTGCCTGCGTGCCACGCACCCCAATAAGAAGCCCTTCACGGGCCACCGTCTGATTGAGCCCATGCCGGACTGCCACCTGCGGGGGCTGCAGTGCCTGGAGCACGAGGAGGAGAAAGTGAACATGTATTGCGTCACCGACGAACAGCTCATCTGCTCGCTGTGCAAACTGGTGGGAAGACACCGAGACCACCAGGTGGCGGCCTTGAGCGACCGCTTCGAGAAACTCAAGcaAGCGTTGGATTCCAACCTGAGTCATTTGGTCAAGAGGAACAATGAGTTGGAGGGGTTGATGGGAAAGTTGATCCAAACCTGTCAACATGTAGAGGTCAATGCATCGCGGCAGGAGGGAAAGCTGATGGAAGAATGCGACCTCCTGATTGACATCATCCAGCAAAGGAGACAGATCATTGGGACCAAAATCAAGGAGGGGAAGGCAGTCCGGATCAGGAAGCTAGCCCAGCAAATCTCCAACTGTAAGCAGTGCATCGAAAGGTCCTCTGCTCTCATCACCCAGGCCGACCAGACCTTGAAGGAGACGGACCACGCCCGCTTCCTCCAGACCGCCAAGAGTATCACCGAAAGGGTTTCCATGGCGACCGCCTCCTCTCAGGTCCTGATTCCAGAGATCAACCTGACAGACACATTTGACACGTTCGCTCTGGACTTCACCAAGGAGAAGAAGCTGCTGGAGAGCCTGGACTACCTCACAGCGCCAAGTCCTCCGGGCATCAGAGAAGAGCTCTGCACTGCATCGTACGACACCATCACCGTCCACTGGACCTCAGACGACGAGTTCACAGTGCTTTCCTATGAGCTCCAGTATGCTATCTTCACAGGGCAAGCCAACATTGTCAGCCTGTGTAACTCAGCAGACAGCTGGATGATTGTGCCTAACATCAAGCAGAACCACTACACCGTCCACGGCCTGCAGAGCGGCACCAAGTACATCTTCATCGTCAAAGCCATCAACCAGGCAGGTGCCCGCAGCAGTGAGCCAGGGACACTCAAAACCAACAGCCAACCATTCAAGCTGGACCCCAAGTCCGCCCACAAGAAGCTTAAGGTCTCCCATGACAACCTGACGGTGGAGCGCGACGAGACGGCATCGAAGAAGGGACACGGCCAGGAGCGCTTCACCAGCCAGAGTAGCTACGGAGTCGTCGGCAACGTTTACATCGACAGCGGACGCCACTACTGGGAGGCCCTGATTGGAGGAAGCACATGGTATGCGGTGGGCATCGCCTACAAGTCGGCCCCCAAGCACGAGTGGATCGGCAAGAACTCGGCTTCCTGGGTCCTGTGCCGCTGCAACAACTCGTGGGTGGTGCGCCACAACAGCAAGGAGCTGGCCATCGAGCCTTCGCCCCACCTGCGCCGCGTGGGTGTCCTGCTGGACTACGACGCCGGCTCGCTTTCCTTCTACGACGCCGTGGGCTCGCAGCACCTGCACACGTTCCACGTGTCCTTCGCCCAGCCCGTGTGCCCCGTCTTCAACGTGTGGAACAAGTGTCTGACTGTCCTCACGGGTCTGCCCATCCCTGAACACCTAGAAGGGTTGGAAACCCAGAACTGAGACCCCCTGGGAACTAGAATTCCCCCTGGCCAAACCAGACTAAGTTGGTTTGGGTTAGGTTAAGCCACCTTCAAGGCACTTTGGGCCTCTATGAACTAGCAAAGGTCGTCTTCAATCTGGAATCATCTCAGAAAACGTCATGCTACCAcctcatttcatttcattttagGCACTTTGGACCACCCCTTGGGCCAACGTCAATCACACAGACCACCCTCTATTCATCTACAGAACGCTGTTTGCAGTGGGAAAGAAGGAAAAAGCTACATAGCTGTACAGTTGTGAATTATAGCATTGcccaacacacacattcatgatTATGGAACCAAAGTAGCCATGAATTTAAATgattttattactattttcttGTGCTTATATGATAGATATTCATTATTGAAGTGTAAGAAATTAGGCTAGATAAATTCCAATATGTACAATTTCCCTTATGTTTACACATTGTTCATACATTATTTATGGTCAGTTTACCAGGGATAGGATACATTTATAAATCTAGGGAAATTATTTTGATGCAATTTATCGATGTTACTTTCTAATCTAGAAAAGGTATTGTGTCCTAATACATTCATGTGTAAATTATACATATTTTGTGACAACATAATTACTTTCTTCCTTACAATACCTTAAACCCACAAGTGTAAAAGTACTGTCGCATTTTAGACAAGCAGGGAAACACAACAAATTGCGTGTTTAATTTTTGTCATGTTTTGTCCTCTTTGCAATGGGATAGGTCCTTTGTTGTTCAGCCATGCATGTTAGTGAGAATCTCTCAGGTCTATTCCAAATCCTGTTTTCATCCATGAAAATAATGCAAACTACTTTGTCCTCTCCTGAGTGAATACTAACCCCCTACTGTCCTTAGCAGTTGTCACAAACCTAAACTGAAAAACACTTCCACTGTGTTGTTAGGTACAGTGAGGACAAGACTATTACAATAATTTCTCTATTCAGGTCCAGTGGCCGCTGGGAGGTACATTTCAATGACAACAACCATGCCTCTGGGCATTTGTCATCCATATGTCACACAGGGAAGCACCACACTTACAAACTCGGTCATTATTTCACCAACGTCGATGCCACCTCGAGCCACAGCTTGACCTCAGCTTGACCACTGTATGACCCAGTGACCATGAACTCAAACGTCTCGCCACCACAAACAGGAACTCCATGATGTACATAGCATATTATGTTCTCTTTATTCTGTCTTCTTTCGAAAGAAGGACCATCTGGATATTTTACAGACCATCCTTAAGTTTTTAAAGGAACACAATGGATTGGTTCACTCATTAATATGTGTCTTAGGTTTGGGATGATCTGTTTCCTTGTAATGGATGCAGCGATTATCTGCTCTTTAATGTTGCCACAGAAACTGTTTCAATTCAGTTGTATGTTTGAATCCGGTGGACACTATTTTAGGAAAGAGGATCGGAATGCTTGTGTCTCTGTACAAATATGAAGTAGCATTTGTCGATTGTCAAAGGTTCAATAAAGAAAGATACCATTTAACTT

Function

NR:

description
E3 ubiquitin-protein ligase Midline-1-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08285 TRIM18, MID1; midline 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608707.2 False 3793 mRNA 0.51 10 18523603 18581511
XM_021608705.2 True 3940 mRNA 0.51 10 18539259 18581511

Neighbor

gene id symbol gene type direction distance location
LOC110527437 LOC106575282 coding upstream 27914 18404754 ~ 18495689 (+)
LOC110527431 LOC106575289 coding upstream 281440 18205301 ~ 18242163 (+)
LOC110527430 gemin8 coding upstream 318770 18202651 ~ 18204833 (+)
LOC110528803 adcy10 coding upstream 399288 18111715 ~ 18127563 (+)
gcg2 gcg2 coding upstream 411952 18108790 ~ 18111651 (+)
LOC110527442 LOC106575278 coding downstream 601872 19183383 ~ 19192955 (+)
LOC110527443 LOC106575277 coding downstream 843854 19425365 ~ 19430875 (+)
LOC110527444 LOC106575275 coding downstream 1201334 19782845 ~ 19788004 (+)
LOC110527447 LOC106575273 coding downstream 1301057 19882568 ~ 19915181 (+)
LOC110527448 LOC106574424 coding downstream 1335934 19917445 ~ 19958310 (+)
G581319 NA non-coding upstream 13369 18509918 ~ 18510234 (+)
G581037 NA non-coding upstream 43055 18480283 ~ 18480548 (+)
G581031 NA non-coding upstream 64733 18458636 ~ 18458870 (+)
G581018 NA non-coding upstream 95022 18428256 ~ 18428581 (+)
G581493 NA non-coding downstream 60830 18642341 ~ 18642583 (+)
G581498 NA non-coding downstream 64136 18645647 ~ 18645847 (+)
G581503 NA non-coding downstream 68367 18649878 ~ 18650294 (+)
G581514 NA non-coding downstream 76900 18658411 ~ 18658738 (+)
G581515 NA non-coding downstream 78072 18659583 ~ 18659820 (+)
G580997 NA other upstream 30694 18492227 ~ 18492909 (+)
G580365 NA other upstream 706755 17813342 ~ 17816848 (+)
G580315 LOC106575303 other upstream 842935 17670275 ~ 17680668 (+)
G580179 NA other upstream 1123070 17398793 ~ 17400533 (+)
si:ch211-181l5.2 cl10a other upstream 1189474 17333699 ~ 17336419 (+)
G581976 LOC106581475 other downstream 395167 18976678 ~ 18976999 (+)
LOC110528807 LOC106574429 other downstream 1436344 20017855 ~ 20028775 (+)
G583605 NA other downstream 1657400 20238911 ~ 20239797 (+)
G584643 NA other downstream 2499317 21080828 ~ 21082615 (+)
G585573 NA other downstream 3371518 21953029 ~ 21953269 (+)

Expression


Co-expression Network