LOC110527440 (LOC106575280)


Basic Information

Item Value
gene id LOC110527440
gene name LOC106575280
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19062829 ~ 19068838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608710.2
AAATTGTGCATGACATTCAGCAATGCTTGCAAATCCGTTTTTGCTTTTAATCAACTTGGGTCTCTTTTTTTCGCCCGAGGGATGAAGGGCTGTGACTGTCCCTATGTAACAATCAGTATTTCTAACGCATGCAGGCTTGAGGATGAACACCTTCCATAATGACCACGACTAGCCTATTTATCATTTATTAACAAAATATCTCCGGATATCTGATGATAATGATTGATACCCGGCGGTTTCTATACTATTCGCAAATTGTCGGGATCTGCAGGATGACACCCCATACCGGCACCATACTTCAGTGAGCTGGGGCACCTTCTCCCTCGAAAATGCATATCTGGATACTGAAAATAATCCTTCTGATCGCAGCATCTCTGAGTCTGGTCGAGATGTACGACAATTACGGGGAGATCTGTAGGAATCTATGTACATGCGAAGAGAAGGAAGGGATACTGACGGTAAGCTGTGAGAATAGAGGGATCATCCGACTGACAGAAATAAGCCCGGTGCATTTTTCAATGTACCACCTTCTGCTGACAGGGAACCTCTTAAAGAAACTGTCCCTCAACGACTTCATCAACTACACTGGGGCGACCATATTGCATTTAGGCAACAATGCTATCGATGAAGTGGAAACGGGTGCTTTCAACGGACTCCAGGGATTAAAGAGATTGCACTTGAACAACAACAAGATAGACGTCCTAAGGGATGATACGTTTGTCGGCCTGGAGAGTTTGGAATACCTTCAGATTGATTACAATTACATCACCAATATAGAGCCTAATGCCCTGAGTAAACTGCATCAGCTCACAGTTCTCATTTTGAATGACAATTTGCTCTCTGCTCTGCCTACAAACATTTTCCGGAATGTTCCCTTGACACATCTGGACCTCAGGGGCAACCGGTTGAAAATGTTTCCTTACATTGGGCTCCTGGAGCACATGGACAAAGTGGTGGAATTACAACTTGAGGAGAACCCGTGGAATTGCTCGTGTGAGCTCATTGCCCTGAAAGCTTGGCTGGAGAGCATATCGTACACAGCTTTGGTGGGGGAGGTGGTCTGTGAGACACCGTTCAGACTGCATGGCAGAGACCTGGACGAGGTCTCCAAACAGGAGCTGTGCCCCCGACGAGCAATTTCTGAATATGAAATGCGACCCCCTCCCCCACTCAGCACCAATGGATATTTCCAAACCACGCCAGCTTCGGTGACGGCCTCAGCCACCTCGTCAAATGCTTTCAAGGCATCGTCAAGGCCTACCAAGGGCACCCGTCAATCAAACCGAACCAGGTCAAAGCCCACCTCCCGGATTCCAGCTAACCCTTACAACTATGGCCCCATCATTGCTTATCAGACCAAATCTCCTGTGCCTTTGGACTGTCCCACCACCTGTACATGTAATCTGCAGATTGCTGATCTTGGACTAAACGTCAACTGCCaagagagaaagattgagaaCATATCTGACCTGAAGCCCAAGCCATACAATCCCAAAAAAATGTATCTCACAGGGAATTACATTCCTGTGGTACGCAGATCTGATTTCTTGGAGGCTACCGGATTGGATTTGCTTCACCTAGGAAACAATAGGATATCCCTCATCCAAGACAGAGCTTTTGGGGATTTAACCAACCTGCGTAGGCTGTATTTAAATGGTAATCTAATCGACAGGCTTACAGCAGAGATGTTTTTTGGCCTGCAGAGTTTGCAGTATCTCTACTTAGAATACAACAAAATCCGTGAGATTGTAGGGGGCACGTTCCGGTTTGTGCCAAACCTTCAGCTGCTTTTCCTCAACAATAACCTTCTGAAAACCTTACCAGCGGGAATCTTTACTGGGCTGTCCCTCTCTAGACTTAATCTCCGCAGTAACCACTTCCAAAACCTGCCTGTGAGCGGTGTGTTAGATCAGTTAAAATTGCTGTTGCAGATAGATCTGATTGAGAACCCATGGGATTGCTCGTGTGACGTCGTCGGCATGAAGATATGGCTCGAGCAGCTCAGTGCCGGCACCGTTGTTAATGAGGTTAAATGTGAGACACCCAAACGTCACAGCGGGATTGATATGCGTTCCATTCAGTCTGAACAGCTGTGTCCAGATTACTCTGACGTAGTCGTCTCAACAGCGCCCCCCTCTGATGAGCCTCTGCCGGACAGAGCCACCACCACAGAGACCTACCAGAGATCTAACCCCACTAGCAGCgtcgtccctctctctgtcctcatcctCAGCCTGCTGCTCGTGTTCATCATGTCCGTCTTTGTGGCGGCGGGGCTGTTTGTTGTCGTGGTGAAAAAGCGTAAAAAGTCCCAGAGCGACCGCACCAGCACCAACAACTCTGACGTGAGCTCGTTTAACTTGCAGTACAGCCTTTACAGTAATAACCGAACCGTCCCCAAAGTCAAAGCCCCCGCCGGACACGTGTATGAGTACATCCCTCACCCTATGGGCCACATGTGCAAAAATCCCATTTACAGGTCCAGGGAAGGCAACACAGTCGAGGATTACCGCGACCTCCATGAATTGAAGGTGACTTATAGGAGCGATGTGGATGAGGAGAGGAACAGCAACATGAGAAGTCCCACTTATAGCGTGAGCACTATTGAGCCTCGCGAGGACCCCTCCCCTGCAGAAAATGCCGAGCACTTCTTCAGGGGCATCATAGAGGCGGACAACCAATCCCCCTCCGGTAACAGTCTAGAATACAAGTACACTGGCCCTGTCTCGTACACGTACAACCCAAACTTTGATGTTAGACGCCAGTTCTTACACCCAGAGAGGATACGAGAAACAGTGCTTTATGGCACAGCGCCGAGTACTGTTTACGTGGAGCCCAACAGAAATGAATATTTGGAACTAAAAGCGAAACTTCAAGTCGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACCACTTTCAGTCAGTTTTGAGCAACAGATTTGTCCATGTATGAAGGATTTCCCCCCTTAAACCCACTGGCTCAATATTGAGGGTGCCTTGGCACGACACATCAACAAAATAAGCATTAAACGGGGTGTGCCAAACTCTATTATTCTTATTTCTTAATTACATGACATTGCAGGAACTGAAAGTCTCTCTCTGAACCTAACTGGACGAAAGTTGTTCTACTTAACTGGTGATTTAGAATCTATTTTTATATGGTGAAGATTGAATATACATACATGTAAGTGTACAGGTCAACTTACCCAACTACATTTTCAGGAATATAACCATACATATATTGTGAATCACAAAAATGTTTATAAATCACCATCTGACGAAAAAACACTGTACGGCAGTGTCTCCATCAAACTGCGCAGGACAATTCTCTGCTTTAGTCTGTAAGTAAGTATTTATTGGAGTACTCTGCCATGTATTTTCAAACATTTTGATTCTTCATCAGTATTACCTGTGTCATAATTCCATGATCCTCTGTAAACGTTTATGTTTGTAGTTCCATATCATTTACTGTAGCTCGCATTGTAAAAgtggcttttttttttaaaatggtgGCACACCCCCAATGTTAAAGAAAGACTGCGTCatttaaagaagaaaaaaagttgTCTTTGTATGCTTTCTGCACTTTTTGGAGTTGGAAGGCAAGTGGGCCTTTAAACAGCTATCATTAGGATGATTACTATTAAAAATGAATATGTGCGTTCATTCTTAATATGTATTCTTGATATGTTATCAAATTCATGAATAATAATTGAAGTAATAATTATGTTGTGTAATACTGATCTTTTAATGTGACACCTATTTTTATACAAGCATTCGCAATTCTCTTTCCCTCATCAATTTCATTCGTTTTAATTGCTTTGCACTTATTGCACTATATTGACCAAAATATGTTAATGTCATCAATAAATATGATGTCAGGTT
>XM_021608709.2
AAAACGCATAATTGATTGCGCAGAGACATAGGAAGGACATCATATTATTTCGTCAGACAATGTTGAATTAAAGTCAACTATCTAAGATGCGCATACATATTCAGTCAAATTGTGCGGTCAACGCTGAGGAGAAAAATAAGGATCTTGGGTAGATCTATTCACAACGCAATACAAGCCGTACCACTCACAAGATACAAAGGGATTCGTGCCTTTCCACCGATTCCCCGGCGCGCATGCTACAGAGGGAGATCTCGGTTGAAATGGATGTATCTGATGTTTTGCAGTTCAGTTTATTACACTTTTCCCATATGAAATTATTACTTTTCTTTGATTCCATTCCACAATGAGAGACCAAGATTCGCTGTGAGAAATACAAGAACCCGCTTTTTGTCGCGCTGATCGTCACGTTGCAGGCGTGAATGAGACAGTTTGTGCAATTCATTGCCAGGTATTTGGAGCTAAAGACCGCCGCGGCTCTACTTTGAGGATTTTACATCGGGGAAAAAGGAAGGAAAATCACAGATTCCACATTACCATAGGACAGGATGGTAAACAGCGGAAGGTAGTTGGAATGCTTTCGCATTGACAAGGTTCAACATGATGACACCCCATACCGGCACCATACTTCAGTGAGCTGGGGCACCTTCTCCCTCGAAAATGCATATCTGGATACTGAAAATAATCCTTCTGATCGCAGCATCTCTGAGTCTGGTCGAGATGTACGACAATTACGGGGAGATCTGTAGGAATCTATGTACATGCGAAGAGAAGGAAGGGATACTGACGGTAAGCTGTGAGAATAGAGGGATCATCCGACTGACAGAAATAAGCCCGGTGCATTTTTCAATGTACCACCTTCTGCTGACAGGGAACCTCTTAAAGAAACTGTCCCTCAACGACTTCATCAACTACACTGGGGCGACCATATTGCATTTAGGCAACAATGCTATCGATGAAGTGGAAACGGGTGCTTTCAACGGACTCCAGGGATTAAAGAGATTGCACTTGAACAACAACAAGATAGACGTCCTAAGGGATGATACGTTTGTCGGCCTGGAGAGTTTGGAATACCTTCAGATTGATTACAATTACATCACCAATATAGAGCCTAATGCCCTGAGTAAACTGCATCAGCTCACAGTTCTCATTTTGAATGACAATTTGCTCTCTGCTCTGCCTACAAACATTTTCCGGAATGTTCCCTTGACACATCTGGACCTCAGGGGCAACCGGTTGAAAATGTTTCCTTACATTGGGCTCCTGGAGCACATGGACAAAGTGGTGGAATTACAACTTGAGGAGAACCCGTGGAATTGCTCGTGTGAGCTCATTGCCCTGAAAGCTTGGCTGGAGAGCATATCGTACACAGCTTTGGTGGGGGAGGTGGTCTGTGAGACACCGTTCAGACTGCATGGCAGAGACCTGGACGAGGTCTCCAAACAGGAGCTGTGCCCCCGACGAGCAATTTCTGAATATGAAATGCGACCCCCTCCCCCACTCAGCACCAATGGATATTTCCAAACCACGCCAGCTTCGGTGACGGCCTCAGCCACCTCGTCAAATGCTTTCAAGGCATCGTCAAGGCCTACCAAGGGCACCCGTCAATCAAACCGAACCAGGTCAAAGCCCACCTCCCGGATTCCAGCTAACCCTTACAACTATGGCCCCATCATTGCTTATCAGACCAAATCTCCTGTGCCTTTGGACTGTCCCACCACCTGTACATGTAATCTGCAGATTGCTGATCTTGGACTAAACGTCAACTGCCaagagagaaagattgagaaCATATCTGACCTGAAGCCCAAGCCATACAATCCCAAAAAAATGTATCTCACAGGGAATTACATTCCTGTGGTACGCAGATCTGATTTCTTGGAGGCTACCGGATTGGATTTGCTTCACCTAGGAAACAATAGGATATCCCTCATCCAAGACAGAGCTTTTGGGGATTTAACCAACCTGCGTAGGCTGTATTTAAATGGTAATCTAATCGACAGGCTTACAGCAGAGATGTTTTTTGGCCTGCAGAGTTTGCAGTATCTCTACTTAGAATACAACAAAATCCGTGAGATTGTAGGGGGCACGTTCCGGTTTGTGCCAAACCTTCAGCTGCTTTTCCTCAACAATAACCTTCTGAAAACCTTACCAGCGGGAATCTTTACTGGGCTGTCCCTCTCTAGACTTAATCTCCGCAGTAACCACTTCCAAAACCTGCCTGTGAGCGGTGTGTTAGATCAGTTAAAATTGCTGTTGCAGATAGATCTGATTGAGAACCCATGGGATTGCTCGTGTGACGTCGTCGGCATGAAGATATGGCTCGAGCAGCTCAGTGCCGGCACCGTTGTTAATGAGGTTAAATGTGAGACACCCAAACGTCACAGCGGGATTGATATGCGTTCCATTCAGTCTGAACAGCTGTGTCCAGATTACTCTGACGTAGTCGTCTCAACAGCGCCCCCCTCTGATGAGCCTCTGCCGGACAGAGCCACCACCACAGAGACCTACCAGAGATCTAACCCCACTAGCAGCgtcgtccctctctctgtcctcatcctCAGCCTGCTGCTCGTGTTCATCATGTCCGTCTTTGTGGCGGCGGGGCTGTTTGTTGTCGTGGTGAAAAAGCGTAAAAAGTCCCAGAGCGACCGCACCAGCACCAACAACTCTGACGTGAGCTCGTTTAACTTGCAGTACAGCCTTTACAGTAATAACCGAACCGTCCCCAAAGTCAAAGCCCCCGCCGGACACGTGTATGAGTACATCCCTCACCCTATGGGCCACATGTGCAAAAATCCCATTTACAGGTCCAGGGAAGGCAACACAGTCGAGGATTACCGCGACCTCCATGAATTGAAGGTGACTTATAGGAGCGATGTGGATGAGGAGAGGAACAGCAACATGAGAAGTCCCACTTATAGCGTGAGCACTATTGAGCCTCGCGAGGACCCCTCCCCTGCAGAAAATGCCGAGCACTTCTTCAGGGGCATCATAGAGGCGGACAACCAATCCCCCTCCGGTAACAGTCTAGAATACAAGTACACTGGCCCTGTCTCGTACACGTACAACCCAAACTTTGATGTTAGACGCCAGTTCTTACACCCAGAGAGGATACGAGAAACAGTGCTTTATGGCACAGCGCCGAGTACTGTTTACGTGGAGCCCAACAGAAATGAATATTTGGAACTAAAAGCGAAACTTCAAGTCGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACCACTTTCAGTCAGTTTTGAGCAACAGATTTGTCCATGTATGAAGGATTTCCCCCCTTAAACCCACTGGCTCAATATTGAGGGTGCCTTGGCACGACACATCAACAAAATAAGCATTAAACGGGGTGTGCCAAACTCTATTATTCTTATTTCTTAATTACATGACATTGCAGGAACTGAAAGTCTCTCTCTGAACCTAACTGGACGAAAGTTGTTCTACTTAACTGGTGATTTAGAATCTATTTTTATATGGTGAAGATTGAATATACATACATGTAAGTGTACAGGTCAACTTACCCAACTACATTTTCAGGAATATAACCATACATATATTGTGAATCACAAAAATGTTTATAAATCACCATCTGACGAAAAAACACTGTACGGCAGTGTCTCCATCAAACTGCGCAGGACAATTCTCTGCTTTAGTCTGTAAGTAAGTATTTATTGGAGTACTCTGCCATGTATTTTCAAACATTTTGATTCTTCATCAGTATTACCTGTGTCATAATTCCATGATCCTCTGTAAACGTTTATGTTTGTAGTTCCATATCATTTACTGTAGCTCGCATTGTAAAAgtggcttttttttttaaaatggtgGCACACCCCCAATGTTAAAGAAAGACTGCGTCatttaaagaagaaaaaaagttgTCTTTGTATGCTTTCTGCACTTTTTGGAGTTGGAAGGCAAGTGGGCCTTTAAACAGCTATCATTAGGATGATTACTATTAAAAATGAATATGTGCGTTCATTCTTAATATGTATTCTTGATATGTTATCAAATTCATGAATAATAATTGAAGTAATAATTATGTTGTGTAATACTGATCTTTTAATGTGACACCTATTTTTATACAAGCATTCGCAATTCTCTTTCCCTCATCAATTTCATTCGTTTTAATTGCTTTGCACTTATTGCACTATATTGACCAAAATATGTTAATGTCATCAATAAATATGATGTCAGGTT

Function

NR:

description
SLIT and NTRK-like protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608710.2 False 3888 mRNA 0.45 2 19062829 19067466
XM_021608709.2 True 4216 mRNA 0.44 2 19062829 19068838

Neighbor

gene id symbol gene type direction distance location
LOC110527435 LOC106574410 coding downstream 661033 18384671 ~ 18401796 (-)
LOC110528806 frmpd4 coding downstream 679506 18315416 ~ 18383323 (-)
LOC110527434 prps2 coding downstream 750835 18300391 ~ 18311994 (-)
LOC100170202 NA coding downstream 764765 18244368 ~ 18299083 (-)
LOC110527433 LOC106575287 coding downstream 806568 18245987 ~ 18256261 (-)
LOC118965376 NA coding upstream 73308 19142146 ~ 19145574 (-)
LOC110527100 NA coding upstream 76919 19145757 ~ 19154599 (-)
LOC110527441 NA coding upstream 107197 19176035 ~ 19181090 (-)
LOC110527445 nfip2 coding upstream 754793 19823631 ~ 19832571 (-)
LOC110527446 LOC106574421 coding upstream 782966 19851804 ~ 19881758 (-)
G582017 NA non-coding downstream 57544 19005042 ~ 19005285 (-)
G582014 NA non-coding downstream 59117 19003479 ~ 19003712 (-)
G582013 NA non-coding downstream 60250 19002321 ~ 19002579 (-)
G582006 NA non-coding downstream 63738 18998841 ~ 18999091 (-)
G581991 NA non-coding downstream 77168 18985435 ~ 18985661 (-)
G582279 NA non-coding upstream 71452 19140290 ~ 19140532 (-)
G582343 NA non-coding upstream 152781 19221619 ~ 19223542 (-)
G582349 NA non-coding upstream 168800 19237638 ~ 19237864 (-)
G582422 NA non-coding upstream 237005 19305843 ~ 19306068 (-)
G582451 NA non-coding upstream 256777 19325615 ~ 19325952 (-)
G581174 LOC101077481 other downstream 827791 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 1019449 18042927 ~ 18043380 (-)
G580487 NA other downstream 1662293 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 2262143 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 2501684 16559930 ~ 16635251 (-)
G583661 NA other upstream 1146811 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 1704029 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 1769650 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 2352616 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 2448557 21513832 ~ 21583054 (-)

Expression


Co-expression Network