LOC118965376


Basic Information

Item Value
gene id LOC118965376
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19142146 ~ 19145574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052702.1
TATTCTGAGAAATGGGACAACCTTTGACCTAGGTAATGTTTTATGGTATTTGATCCTTGTGTAATTTTGTAATCTCATTCAGTCTCCCGGAAACGTTGGATGCATTGAAATCATCTGCACAGCCAATGTGTTATACCTTTCGAGATGCCAGTGGATTAATACAATGATATAAATGATGACACTTTTCCACACTTGATCTAAAGCTCAGCACATTCACGCTTAATGTTACAGCTAGATCAAAGTTAACAGAGGCATTTTCCTCTTGTTCTGAAAGCCCACTTGCAACTGCTGAGTGTGTAACTTCTCTCTGGCCACAACTTTTTGGCAGTCTCATATTGAAGGAAGCGCTATGTTGTTGACCGATTGCCATGGAGCCGGAATTTATGTGGCAGCCAGATGAACAGACCCCAAGGCAAAGTCAACCTTGAAGACAGGTACCAAAGCACTTATCAGACTGTCGGCTCACGTGACaaaatacagacagagaaaggcaaATCACAAAGTTGCCACAACGTCTAGATCCCTGCACAAAAGATAAGGCTGTCACCATGGAGATCAGTGAGATCAGCAGGCCTCCCATTAGACTGAGACTGACTGAAGGAGACAAGGCGGTGAGTGTGCGCTGGTGCATCTAAGGCCCGTGAGGCAGCCCCTTCCACACACAGTGTGACTCATGTGATCCAAGGCTTTGACTAAAAGAATAAGGAGGACTCCTTTAGGGGGCTTGCTGCCTTCACTAGTTGCTTCCTTGTTGTTGTTTTCCCCCCCGGGAGGCATATGGTTTCATGTCGCTTTGTTTTTATGTAGGACAGGGAGCGTTTGTTGATGTTGGAGTTTGGGGAAAGAGTGCTAACTCACTCGCTAAGATGTTGTTCCATTTGGGGAAATATGGTGGAGATTCGAGCCGTGACATTCTGAGAACTATTTCGGTGACAACAAGCGACTAAACAGATGATATTCCCGTTTCATTTACTACACACCGGTGATCCTTACAGTATACATAAGTTGTATACATTAGTTGAAGGTGTTTATTTTTCTAGCTTAGATTTAATCTGTCATGGTCTTGTTTCTGTAGAGTTTATTCTGGATTTTACTTTTATTATAGTAAAATCATGTAGACATTTGGAAATTACATTCACTATTGCCCTTGCTTCagctaactatctctctctcttacaatAACTTGAATCCCCATTCTCCAACAGTATAGTACATCTGTTTGGAAAGTTATCCTCCGATTGTTGCAAAGTGATTAATATCAATGGCTTAAATGTGGAGAGCTCTTCTCATGATTACTAAGCACTTTCCTTCTCTGGATCACTGGACATGGTCAGTGAATAGATATTTAAACTACTTAGAGTATTAGCTACAGTTACAATTGTCAGGAAAGCGGATTAGAATTTACTGTGAAGATTAAAAGCTCGAGTAACCCTTGGTTCTGTTAGCCCCACAACAAAAGCTATCGCCACCTCATGCAAATTTAACGTGTCCCTGCAAGATACCTGGGGAGTCCAACAGCTTGAGTATACTGTGTTCTGGGTATGAAGATGATCCCAACATCAACCAGTTAACCAGATTTCAAATGGTCCAATAATTTTGAGTGACCTCTTTTATCGAAAACACATCTGTAAAAAGTCATTATCCTCTTAATTCATATAATCGAACGCACTGGCAATGAGGGTACAATTCTGTGTGCAGCTGAAGTATTGAAATCACTATTTTTCTGTTCTGCATAATGTTTCCATTAATCTTCCTGAGGACCTTTTTTATGTTATTAAATGGCAGGATGCCAGTTCAACACTGCGGTTCCTCAGAGGTTGACTCACATTGCCAGGTGTCGTCTGGCAGAGATGGAAGTCAGATATACTGTGgattattttcaaataaattgATGTGAGAATTGTTTATTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052702.1 True 1912 mRNA 0.41 3 19142146 19145574

Neighbor

gene id symbol gene type direction distance location
LOC110527440 LOC106575280 coding downstream 73308 19062829 ~ 19068838 (-)
LOC110527435 LOC106574410 coding downstream 740350 18384671 ~ 18401796 (-)
LOC110528806 frmpd4 coding downstream 758823 18315416 ~ 18383323 (-)
LOC110527434 prps2 coding downstream 830152 18300391 ~ 18311994 (-)
LOC100170202 NA coding downstream 844082 18244368 ~ 18299083 (-)
LOC110527100 NA coding upstream 183 19145757 ~ 19154599 (-)
LOC110527441 NA coding upstream 30461 19176035 ~ 19181090 (-)
LOC110527445 nfip2 coding upstream 678057 19823631 ~ 19832571 (-)
LOC110527446 LOC106574421 coding upstream 706230 19851804 ~ 19881758 (-)
cfap221 cfap221 coding upstream 851782 19997356 ~ 20017679 (-)
G582279 NA non-coding downstream 1614 19140290 ~ 19140532 (-)
G582017 NA non-coding downstream 136861 19005042 ~ 19005285 (-)
G582014 NA non-coding downstream 138434 19003479 ~ 19003712 (-)
G582013 NA non-coding downstream 139567 19002321 ~ 19002579 (-)
G582006 NA non-coding downstream 143055 18998841 ~ 18999091 (-)
G582343 NA non-coding upstream 76045 19221619 ~ 19223542 (-)
G582349 NA non-coding upstream 92064 19237638 ~ 19237864 (-)
G582422 NA non-coding upstream 160269 19305843 ~ 19306068 (-)
G582451 NA non-coding upstream 180041 19325615 ~ 19325952 (-)
G582502 NA non-coding upstream 219727 19365301 ~ 19365601 (-)
G581174 LOC101077481 other downstream 907108 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 1098766 18042927 ~ 18043380 (-)
G580487 NA other downstream 1741610 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 2341460 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 2581001 16559930 ~ 16635251 (-)
G583661 NA other upstream 1070075 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 1627293 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 1692914 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 2275880 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 2371821 21513832 ~ 21583054 (-)

Expression


Co-expression Network