LOC110527443 (LOC106575277)


Basic Information

Item Value
gene id LOC110527443
gene name LOC106575277
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19425365 ~ 19430875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608712.2
GAGAAAGTAACATTCACGCTGGAGGGCACTCGTATGCTGGGTTTGATGCAATACACACATCAGAGATTATTAGTCTTCATAAAATGCTCAAATTAATAATTAGATGAGGTTATAACCAACCTCCGATTTGGAAAAGAGTTGTCTCCAATACGTTGGCAATGCGTTATGTCGTCTAGTCTACTTtaaaaattacaaataaaataaaaaacagaagcGGATCTAAAGCAACGATTCAGCCTAAGCAGTAACATGACATAAGGAACGTTGTTTGGAATCCATAACCTTGTTGGCTTTAGAATATGAATATTATTGGTCAAAAAAGACTGAACAGATCAACAGCTTTTAGTGTGAACATTTTAACGCTTGCTAGTCCTGTATGTGGATAGATTTTTTTCAGCATTCCCTCAGACGGTGGATTTTTTTCCATTGCAGCTCAGTAGAGGGTGTGAGATCTTTCTAAGAGCACCGGGCAAGAACGAGCACAGTCTCTGTGTAACCTCTTTGTGATTCAAAATTACCAAAGAAAAGCACTGGAAACAAACGCAAGGAAACACCGAAAGGTGTGAGGAATGCGTTTATTTTTTTTCAGTGGCAGTGTGATCAGCACTAAATACCCAGCGTCGGTGTGAATTCAGCACCGAGGGGGAAAGAACAGCACCCACTGCTACCGCTGCACTACGAGAAAATCACGGATTTATAAAATTTGCAAGGTCAGTCATTACCGAACAAAAACCTAAAAATTTGTCAAATGCTATTGCGATTTGTTGTTTTCAATTATTTTCATACCAGCAAAAGGATCCATTCCATCTGAGGCATTATATATGGTCATTTTAAAGCTGGACGCCTGGACATAACGGGCTAGAAGAGCATGGATATTATAAAGGACTGTCGCCTTTTCTTTTAGACCCCTCGGTCTATCTTTTTGGGGATAAACTGGACTAAAAAAACATTGATTCAACAGCTCGTTTTCATGTCTTGAAATCGGGGATGAATTGTTTGTATTGAAAATGCTGCTTTGGATTGTCTTGCTGAAGGCGGCTCTTTGTGTGGCCATTGGAAATGTTACAAGGGACATTTGTAAGGAGCAGATATGCTCCTGCAATGAGATTGAAGGCGATTTGCACATTGACTGCGAAAAAAGGAGCTTTACTAATCTGCACCATTTGACTGGTCCCAGTTCCCAGTTTTATCACTTGCTATTGCATGGGAATTCTTTATCCAGGCTTTTTCCCAATGAGTTTGCTAACTTTTACAATGCCGTAAGCTTGCATTTGGAAAACAACGGTTTGCATGACATTGTCCCTGGTGCTTTTCTGGGACTGCAGCTCGTGAAAAGGCTACACATAAATAATAACAAGATACGGTCATTTAGGAAAAGCACCTTTCTTGGTTTAGATGACTTGGAATATCTTCAGGCTGATTTTAATCTATTGAGAGACATTGACCCGGCCGTGTTCAGGGACTTAAATAAACTTGAAGTGTTAATTCTAAATGATAACCTCATCAGTGCACTACCTATAAATGTGTTTCAACACGTCCCCATCACCCACCTCGACCTGCGAGGGAACCGAATCAAAACGGTGCCTTATGAGGGAGTTCTCGAACAAATACCGGGCATTGCGGAGGTTTTATTGGAGGATAACCCCTGGGactgcaactgcgacctggtttCCCTGAAGGAATGGCTGGAGAATATACCGCAGAACGCGCTTATCGGCCGGGTGATCTGCGAGGCTCCAACGCCACTGCAAGGGAACGACTTGAACGAGACATCGGAGATGGATCTGTGTCCTTCAATGAAAAGTGGTGCTGACGAGAGTTTAGTTGCACCTCCTACCCAAGAGGAGACCTCTGTACCTGGGCCCGTTCCAACGCCTTATAAAGCTAGTGGTGATCCTGGGTCCCCAACCCCAGGGAATGGGCAAAAGGGACGCTCTAAATCGCACTGGCAGTTGAAAACGAAGCCCACATCTATgacaggtgtgaatggggagagagagcagctgcAGATTGTGCAGAACGCATCATGTCCTGTGCCATGCAGCTGCAAGCTCATTGGATCCAggcaggggttaggggttaactgCGAGGGCAAGAAGATAGAGAGCTTGGCTAACCTAAAACCCAAACCCATCACTGCGCACGAATTAAACATGAGAGATAACAACGTCCATGCTATAAAAAAGAACCATCTCAATGGCTATTCAAGTCTAAATCTCCTTGATTTGGGTGGaaacaacatcaaattgataGACAACAGCACTTTTCAAAACCTCACCGAATTAAGATGGTTGTACATGGATAAGAATTACCTGGATACGCTCATTGCGGAAATGTTCACTGGACTTCAAAATCTGGAATATCTCAGTTTGGAATATAATGACATACAGTTGATACTGGCAGGCACATTCAGCCCTCTGCCTAATCTGCGAGTGCTTTTCCTCAACAATAACTTGCTGAAAGCGCTACCTGTGGATGCTTTCCTTGGAGTGTCTTTATCAAAGATTAGCTTGCATAATAATTATTTCACATATCTCCCTGTCGCAGGGGTCTTAGATCAACTCAATTCGATCATTCAAATTGATTTGCATGGGAACCCTTGGGATTGCTCGTGTAATATTGTCCCTTTCAAACAGTGGACGGAGAAACTGGGGGCAGATGTGATCGTTAGTGATCTCAAGTGTGAGTCCCCAGAAGAGTTCTGGAAAAGGGATTTCCGTCACGTCCGAAATGATCTGATGTGTCCCAAGTTGTATGATAAAGtctaccccacctctctctccaaaaACAGCACATTCACCGCAGACACGGGTACGCGCTCGAACTCCTATGTGGAGCCGAACAGGGTATCCATCTCTGTACTAGTCCCTGGGCTACTACTGGTATTTGTCACGTCTGCGTTCACTGTTGTAGGGATGCTTGTCTTCATTTTGCGGAATCGCAAGAGATCAAAGCGGAGGGATGGTAATTCCTCTGCGTCAGAGATCAATTCCTTGCAGACAGTGTGCGACTCGTCTTATTGGCATAGCGGGCCTTACCATGCGGACGGGGGCGCGCAAAGAGGGTTTGACTGTAGCGCCCATTTCTCCACAACAAATGATGCGTAAAACGACTATTGACAATTAAACCtggaatacaaacagacagacaaatatacTGCGTTCTCTTGACACAATGGCAAttgaagaaaaataaacaaatgcTATGTTACGAAGCTTCTTCATTCGCTTTTTGTCGGAGATAGACCATTTTTTGTTTGCTCCAGTTGACTGTGGTACCAATGAGTCTGCTACAGAACCAACTGTAATATATGTATAGACCCCTTCCCCGCCCCTGAATCCCAGTACAGCTATTTGCCGCAATCAGACTGACGATCTGAGAGAGAAGAATCGGGAAATTGTGCACGAGCGCATGAATGTAATGTAAATAACTGACTATCAGATCTGCATGATTTCGCATGGTTTCAACACACACTGGGGAACCATACCATAAGTAACGAAGAAGCCAACTCGACCCTTCTTTCATGTTGTCAAtatgaatatatacagtatatatatgcatataaaactatatatgaatatatacaaAGTGCCATTtctctatttttttgtgaactGCGTTATAGgatttgtatttgttgttttaaaacggtaaaaaaaaacggaaaaagaACACATTGGGACGAAAAATAAGATAAACGCTGTCCACGCATgttcttttttgtttgttttatcagTTGATTGTCGATAAATATCGGGGTTATTTATAATTGGTGCAGATCTCATCATATCTGCACATTCAGCTCTTTATGAATGTATAATGTGTTATTTTATGGTGTGCCAATTGTTGAATTTCAGATATTCGGGATGCAGATGAGCATGACCAATTAACGTCACTCATGGTTATGCTGCAAGGTTAATGTAGCTAAAAACAGTTCGTGGTTTTGTGTGTTAATGACTATAGCCTGATTTGGGGGAAAGGAGAAGGCTTTACCGAATTATATGGGTTTTTTTCTAACTGCATATTTTTTCAAAATTAAAATGTTTTCAATGGAAGTAATGGTATGTGCAGTTCGATCTATGTACAGAGCGCAGGTAGACTAAAATGCTTTTTTTATGTAAAAAGTATTCCTCCACAAAGCGTAGGCTATGATTCACCTCCATTTATGTGAGCTTTTGTAAAGCCATCTATTGTGTCCAAATATGACAAATggacttacattttttttaactaaCGTGCTTAAAATAGATTGGGCAATGGTCAGTTTGCATACAGTAAAAAATGACATAAAAACACGTCTTAACAATCGACAGTATTAGTCTGATGCCATAGGGAAGACATGGCAGGATCACCGCATTACTCTAGACGAGGAAACTCACGATGTCGCTGTTGTTGCATCTTCTCCATTGGAGGGAGGGCTGAGGTATAGGTGTTTTGCAAGAGGGCGTTTTGGAATGGGAATTTTTATCTTGAGATGTTAATTTAATCGGGTGTGAATGGGCAATGTTGCATTAAGAAACATATATATTCTTCATATTAGAAGTGTTCAGCAGTCGGTCTGTTGCCCAATGCAATTACATTTTACTGAACAACTATAGTGATATCAAGATGATGATTACAGTGTACAATAATGGTTAGCATTAAACGTGATATTCTGATAATCCATTCAAATTGATCAATGTCACTGATTCTGCAGTAAAACGGTACAGATCACACGACTGTGAAATGTTTTGGTTTTATATGAATACTCTGTAAATTCAAGCACTGAATTCGTTTTGTTCATACTGgtttttatttttcattaggATCAGGTCCATCAATGTACCCACTGTTTTTAATTTTCTTATAAATAAGCATATGTGCATATATGTGCATACATATGTCAATAAGGCATTACAAGTCAGACATGCACTGGTCTGCAAAAGGTCAAAGTGCTCAGAGCCAGTTCAATATCAAACATGTCTCCACcctgtctgattcatcatttatcTTAATACAGCAACAAGCATTTCCCCCAGGCCTTTTTAACACTGTGGACTGATAGACTATATGGTTAGCTGTGTGACTGCATTAGCAGAACAATGTTCATTGTCGAgtgtctgggctgtgtgtgtgtgtgtgtgtatgtatgcatttAAATAATTCAAATTATTGattaaatgtgtgtgcatgtgcactaGTGTCTGtctacatgtgtgtgtttgtctgtatgctcacacactcacccccccccccccatcactaaatGTAACCAATCACATAGGCTGACCTTGGGGAGTATTATCTTAGCAGGTCTTTGGCAACAACAGTGCTGTCCATCACTTCAGACTCGAGTCTGTTGGTGTATTGCTTCAAAGGGTAATTATCAGTCTCCACTGTGGAACGTTTTACCATGGCTCATGAATTATTGGTCATCTCTCAACGCTGTGTCCCAGAGTTACATTTATATGCTTTACTACATTTGACCTGCTTCTATTTTGTTAAATAAAACgtggttgaggttgagtgaaa

Function

NR:

description
SLIT and NTRK-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608712.2 True 5511 mRNA 0.41 1 19425365 19430875

Neighbor

gene id symbol gene type direction distance location
LOC110527442 LOC106575278 coding upstream 232410 19183383 ~ 19192955 (+)
LOC110527438 LOC106575281 coding upstream 843854 18523603 ~ 18581511 (+)
LOC110527437 LOC106575282 coding upstream 929676 18404754 ~ 18495689 (+)
LOC110527431 LOC106575289 coding upstream 1183202 18205301 ~ 18242163 (+)
LOC110527430 gemin8 coding upstream 1220532 18202651 ~ 18204833 (+)
LOC110527444 LOC106575275 coding downstream 351970 19782845 ~ 19788004 (+)
LOC110527447 LOC106575273 coding downstream 451693 19882568 ~ 19915181 (+)
LOC110527448 LOC106574424 coding downstream 486570 19917445 ~ 19958310 (+)
LOC110528807 LOC106574429 coding downstream 588607 20017855 ~ 20028775 (+)
LOC110527452 LOC106575339 coding downstream 632101 20062976 ~ 20064980 (+)
G582552 NA non-coding upstream 22552 19402612 ~ 19402813 (+)
G582455 NA non-coding upstream 97017 19328148 ~ 19328348 (+)
G582411 NA non-coding upstream 124331 19300819 ~ 19301034 (+)
G582252 NA non-coding upstream 187984 19222589 ~ 19237381 (+)
G582171 NA non-coding upstream 305574 19119559 ~ 19119791 (+)
G582591 NA non-coding downstream 1269 19432144 ~ 19432372 (+)
G582607 NA non-coding downstream 13201 19444076 ~ 19444284 (+)
G582620 NA non-coding downstream 20672 19451547 ~ 19451847 (+)
G582652 NA non-coding downstream 39659 19470534 ~ 19470825 (+)
G582800 NA non-coding downstream 150895 19581770 ~ 19581980 (+)
G581976 LOC106581475 other upstream 448366 18976678 ~ 18976999 (+)
G580997 NA other upstream 932456 18492227 ~ 18492909 (+)
G580365 NA other upstream 1608517 17813342 ~ 17816848 (+)
G580315 LOC106575303 other upstream 1744697 17670275 ~ 17680668 (+)
G580179 NA other upstream 2024832 17398793 ~ 17400533 (+)
G583605 NA other downstream 808036 20238911 ~ 20239797 (+)
G584643 NA other downstream 1649953 21080828 ~ 21082615 (+)
G585573 NA other downstream 2522154 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 2925708 22356500 ~ 22360232 (+)

Expression


Co-expression Network