LOC110527445 (nfip2)


Basic Information

Item Value
gene id LOC110527445
gene name nfip2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19823631 ~ 19832571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608715.2
AAGGAAGTATAGTGGGTAGGAGTAGATTTGGAATTCGGAGGCATTGCGTCACAAGTCAAAGAGCCCTCTGTGTTTCCACTCACTCGACGTTTCCTATCGAAAGTAGTTTTGCTTAATTTGAAGCGTAAATGGACGTTTTATTGTACGTCCCAGCGTGTATATTTAATCTACTTCACCTGAATGATGGCCATTAAAAAGTAAAATCAAGTTACGAAATAGCTAAATACACGATTGTTGACTTTTCGCTTGCTGGCTAGCTCCGCCAGCTGAGTCTAACGTCAAGATGGACCAGGCAGCGAGCCGATACCAAGTGttTGAGAATGATGAAGACGACTCCTGTGAGCCCTCCACCAGCGCCCAGCAGCCGTGCACCTCTGCCCAGGCCAACTCGTCCTCCCAGGCCTGCCCTGTCCCAGTAGCCCTGGGGGTGGATGCAGAGGCCCCACCTCCCCCGTATGCCAGCATCGCCCTGGGAGCCACCGCTGCCATGCCTGTAGAGAGCAGTTGTTACCCAAGTGATTTCCCCGTGCCGCCTCCCTACAGCGTGGCCACCTCTCTTCCCACCTACGACGAGGCAGAGAAAGCCAAAGCTGCAGCCATGGTACTCTCTGCTGTGGAGGTGATACCAGggGAGGATGACTTCAGCGATGTCGACCAGCTGAGGGTGGGGAACGACGGCATTTTCATGCTGGCCTTTTTCATGGCCTTCCTGTTCAATTGGATTGGGTTTTGCCTGTCATTCTGCCTGACCAACACCATCGCCGGCCGATACGGGGCCATCTGCGGCTTTGGCCTCTCTCTCATCAAGTGGATTCTCATCGTCAGATTCTCGGACTACTTTACTGGATACTTCAATGGGCAGTACTGGCTCTGGTGGATTTTCCTGGTCCTCGGTCTCCTGCTTTTCTTCAGAGGGTTCGTGAACTACCTGAAAGTGCGCAACATGTCTGAAAGCATGGCTGCCTCGCACAGAACACGCTTCTTCTTCCTGTACTGAGGTTGTCGCTCCAAACATTCCTCCTTAATGTGAAATTCCCTGAGGATTTGCGAGCCTTTTCTCGAATGAccaggacaaaaaaaaaacacagtgaAAAGACGTGAGGAAGAAAAGAACCAGTGCGTCATTACAGCTGCGAAAGTCTGGCGTCTTTCATTAAAAGCAAAAACAGCTGACTCGTCTCTTTTTTTCAGAAAGTCCATACAATACAGATTAACTCAGCTAAATATACCCTGTGTCTTTCTGATATTTCCACCAGCTTTGTTTGGCTCTGTCGATTTCAATTGCCTTCCTGATCTAACCCCTGTAATGGTCCCACCCTGCTTAATATCCCAAGTCTTGTACAGTGAATACACCTTAACAGTAGTATTGTGCAGTGTAGTAGCTGGGTCTAACTGTTGTGGACGTTTGTGGAAAAGCACACACAAGAAGATGGAAGAAAACAGTATGCAGCCAAGAGGTCTTATGCAGTTGTGTCCTTACCTGAACTGGATATCTGCTCCTAATGAGGAGGATGATAATGAAATGGTTAGTCTAGAGCTCTATCGGGAGTGTCAATATTACAATTTGAATTGTATCCCTTAATTTTAATCCCTGTATTTAATTGTCTTTGGTATAAAAAATGTTATTTGATGAAACTCATGACTTTTCTTATTGTGAAATGATTGAACTGTATCACAGCTTATGCCAATTTATATGTGCAACCTCTTTCTCCATCAGTTGTGAATTGCTTACTTGTCATAGTGCGTATACTGATCTCTCTGTCAGTCCAATTTTGAACTGGAATTTGTGTTTATCCCTAAAAAGGATATCTGCCTTTTGcaccatttttattttcaaaaaaatgtaattttcatTAAGTTGATTATTGCAATTAGCCTGAACTGTGACATTTTAAAGTATTGTCGCCTTTCTTTAATGCTTGAATGATGCCTTTGTCATTTTGTTTCTGTTACACAGAAGCCTCATCAGCAATATCGAAAAACGTAACTTAAATGCATGATTAGTCTGGCCGAGTTGGTTATAATAGTATTCAGCTAAAGCaacgttattattattattattatatttgtttgtttgtaaaaCAGCCAAACAATTTTTGTCAGAAATGATGGTACTCAGAGATGATGATGCGTGCTTGTTAACCCTTTAACCTGAAGTCTTGCAAAATGCAAATAAAGTTCCAAATGCACCCTG
>XM_021608716.2
AAGGAAGTATAGTGGGTAGGAGTAGATTTGGAATTCGGAGGCATTGCGTCACAAGTCAAAGAGCCCTCTGTGTTTCCACTCACTCGACGTTTCCTATCGAAAGTAGTTTTGCTTAATTTGAAGCGTAAATGGACGTTTTATTGTACGTCCCAGCGTGTATATTTAATCTACTTCACCTGAATGATGGCCATTAAAAAGTAAAATCAAGTTACGAAATAGCTAAATACACGATTGTTGACTTTTCGCTTGCTGGCTAGCTCCGCCAGCTGAGTCTAACGTCAAGATGGACCAGGCAGCGAGCCGATACCAAGTGttTGAGAATGATGAAGACGACTCCTGTGAGCCCTCCACCAGCGCCCAGCAGCCGTGCACCTCTGCCCAGGCCAACTCGTCCTCCCAGGCCTGCCCTGTCCCAGTAGCCCTGGGGGTGGATGCAGAGGCCCCACCTCCCCCGTATGCCAGCATCGCCCTGGGAGCCACCGCTGCCATGCCTGAGAGCAGTTGTTACCCAAGTGATTTCCCCGTGCCGCCTCCCTACAGCGTGGCCACCTCTCTTCCCACCTACGACGAGGCAGAGAAAGCCAAAGCTGCAGCCATGGTACTCTCTGCTGTGGAGGTGATACCAGggGAGGATGACTTCAGCGATGTCGACCAGCTGAGGGTGGGGAACGACGGCATTTTCATGCTGGCCTTTTTCATGGCCTTCCTGTTCAATTGGATTGGGTTTTGCCTGTCATTCTGCCTGACCAACACCATCGCCGGCCGATACGGGGCCATCTGCGGCTTTGGCCTCTCTCTCATCAAGTGGATTCTCATCGTCAGATTCTCGGACTACTTTACTGGATACTTCAATGGGCAGTACTGGCTCTGGTGGATTTTCCTGGTCCTCGGTCTCCTGCTTTTCTTCAGAGGGTTCGTGAACTACCTGAAAGTGCGCAACATGTCTGAAAGCATGGCTGCCTCGCACAGAACACGCTTCTTCTTCCTGTACTGAGGTTGTCGCTCCAAACATTCCTCCTTAATGTGAAATTCCCTGAGGATTTGCGAGCCTTTTCTCGAATGAccaggacaaaaaaaaaacacagtgaAAAGACGTGAGGAAGAAAAGAACCAGTGCGTCATTACAGCTGCGAAAGTCTGGCGTCTTTCATTAAAAGCAAAAACAGCTGACTCGTCTCTTTTTTTCAGAAAGTCCATACAATACAGATTAACTCAGCTAAATATACCCTGTGTCTTTCTGATATTTCCACCAGCTTTGTTTGGCTCTGTCGATTTCAATTGCCTTCCTGATCTAACCCCTGTAATGGTCCCACCCTGCTTAATATCCCAAGTCTTGTACAGTGAATACACCTTAACAGTAGTATTGTGCAGTGTAGTAGCTGGGTCTAACTGTTGTGGACGTTTGTGGAAAAGCACACACAAGAAGATGGAAGAAAACAGTATGCAGCCAAGAGGTCTTATGCAGTTGTGTCCTTACCTGAACTGGATATCTGCTCCTAATGAGGAGGATGATAATGAAATGGTTAGTCTAGAGCTCTATCGGGAGTGTCAATATTACAATTTGAATTGTATCCCTTAATTTTAATCCCTGTATTTAATTGTCTTTGGTATAAAAAATGTTATTTGATGAAACTCATGACTTTTCTTATTGTGAAATGATTGAACTGTATCACAGCTTATGCCAATTTATATGTGCAACCTCTTTCTCCATCAGTTGTGAATTGCTTACTTGTCATAGTGCGTATACTGATCTCTCTGTCAGTCCAATTTTGAACTGGAATTTGTGTTTATCCCTAAAAAGGATATCTGCCTTTTGcaccatttttattttcaaaaaaatgtaattttcatTAAGTTGATTATTGCAATTAGCCTGAACTGTGACATTTTAAAGTATTGTCGCCTTTCTTTAATGCTTGAATGATGCCTTTGTCATTTTGTTTCTGTTACACAGAAGCCTCATCAGCAATATCGAAAAACGTAACTTAAATGCATGATTAGTCTGGCCGAGTTGGTTATAATAGTATTCAGCTAAAGCaacgttattattattattattatatttgtttgtttgtaaaaCAGCCAAACAATTTTTGTCAGAAATGATGGTACTCAGAGATGATGATGCGTGCTTGTTAACCCTTTAACCTGAAGTCTTGCAAAATGCAAATAAAGTTCCAAATGCACCCTG

Function

NR:

description
NEDD4 family-interacting protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608715.2 False 2194 mRNA 0.44 8 19823631 19832571
XM_021608716.2 True 2191 mRNA 0.44 8 19823631 19832571

Neighbor

gene id symbol gene type direction distance location
LOC110527441 NA coding downstream 642541 19176035 ~ 19181090 (-)
LOC110527100 NA coding downstream 669032 19145757 ~ 19154599 (-)
LOC118965376 NA coding downstream 678057 19142146 ~ 19145574 (-)
LOC110527440 LOC106575280 coding downstream 754793 19062829 ~ 19068838 (-)
LOC110527435 LOC106574410 coding downstream 1421835 18384671 ~ 18401796 (-)
LOC110527446 LOC106574421 coding upstream 19233 19851804 ~ 19881758 (-)
cfap221 cfap221 coding upstream 164785 19997356 ~ 20017679 (-)
LOC110527451 LOC106575269 coding upstream 196063 20028634 ~ 20038269 (-)
LOC110528808 steap3 coding upstream 205909 20038480 ~ 20046983 (-)
LOC110527101 LOC106575264 coding upstream 217432 20050003 ~ 20055651 (-)
G583188 NA non-coding downstream 135 19819710 ~ 19823496 (-)
G583190 NA non-coding downstream 9133 19812037 ~ 19814498 (-)
G583206 NA non-coding downstream 32814 19790579 ~ 19790817 (-)
G583199 NA non-coding downstream 49594 19773815 ~ 19774037 (-)
G583192 NA non-coding downstream 58305 19765109 ~ 19765326 (-)
G583223 NA non-coding upstream 10863 19843434 ~ 19843829 (-)
G583186 NA non-coding upstream 15149 19847720 ~ 19851609 (-)
G583246 NA non-coding upstream 44609 19877180 ~ 19909687 (-)
G583255 LOC108249475 non-coding upstream 56818 19889389 ~ 19892589 (-)
G583260 NA non-coding upstream 61726 19894297 ~ 19894565 (-)
G581174 LOC101077481 other downstream 1588593 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 1780251 18042927 ~ 18043380 (-)
G580487 NA other downstream 2423095 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3022945 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 3262486 16559930 ~ 16635251 (-)
G583661 NA other upstream 383078 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 940296 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 1005917 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 1588883 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 1684824 21513832 ~ 21583054 (-)

Expression


Co-expression Network