LOC110527446 (LOC106574421)


Basic Information

Item Value
gene id LOC110527446
gene name LOC106574421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19851804 ~ 19881758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982864.1
TAGATGAATATCTGGAGTGAGCGGGGTTGGCTCCAATCCAAGCCATTACCTTTACTGCCTCCACCGGTGGAGTCTTTGCCAGTAGCCTACATACATTTCAGTGAGGAGTATAGTTCTTTCATGTCTCCCGGttgcatagagagagaggagagaaatccGAAATACGAGGGATGTCAAACCGAACAGATCTGAAGGGTGTGAAAAGCCAACGACTTCCTCCACGAGAACTTGCCAATGGAATAATCTGATTTGTAAACATATTGTACCGTTTTTGCGTTGCACTTTTTTCCCCACCTAAACAGTAAGGAATGTGGGCTTTTCTGAGTGGAAAATTATTTAGTGTTCTTTCAGCACCAGTGATTGTAGCTGTCGTTTGTTGCGCACAAAGcgTGAATGAACCAGGGAACATGTCTTTTGTGAAAGAGACGGTGGACAAACTACTAAAGGGATATGATATTCGTCTTCGACCAGACTTTGGAGGGGCCCCTGTTGCAGTTGGCATGAGTATAGATGTGGCGAGCATAGACATGGTATCCGAAGTCAACATGGACTACACTTTAACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACTTAGGGATCCCACTGAACCTCACCCTGGATAACCGGGTAGCAGATTCACTCTGGGTCCCTGACACCTACTTCCTGAATGACAAGAAGTCCTTCGTCCACGGTGTGACGGTCAAGAACCGCATGATCCGCCTCCACCCGGATGGAACAGTGCTCTACGGCCTGAGGATCACAACGACGGCAGCCTGTATGATGGACCTGAGGAGGTACCCTCTGGACGAGCAGAACTGCACTCTGGAGATCGAGAGCTATGGATACACGACAGATGACATTGAGTTCTACTGGAAGGGAGGAGACAATGCGGTGACGGGGGTGACACGCATTGAGCTGCCACAGTTCTCCATAGTGGACTACAAGCTGGTGTCCAGAAATGTTGTCTTTTCCACAGGTGCCTACCCACGACTGTCTTTGAGCTTCAAGCTAAAGAGGAACATCGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATCTTGTCCTGGGTCTCCTTCTGGATCAATTACGATGCCTCGGCTGCAAGAGTGGCATTAGggatcaccactgtgcTCACCATGACCACCATCAACACCCATCTGAGAGAGACGCTCCCCAAGATCCCCTACGTCAAGGCCATCGACATGTACCTGATGGGCTGCTTCGTCATGGTCTTCCTGGCCCTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGACCACAAATGCAGAAGAAGCTGGCAGAGAAAGCCGAGAGGGCCAACAATGAGAGGGCGGCCAAATATGACACCAATCGGGTAAGTCTTCATGAAGATCTCTGTCGAGATGCTCTAACTTCTTCAAAGTTCTTCCAAGTTGTCGGGCGTTATCTTTGCGGTCCGCACACTCTTATGACGGCAGATCAGAAACTCTATAAATATGGTGACCATCATGTTGTCGTAGCTCCAGATAATACATCAATGTTCTACTTCCGTCTCCAGGCGGAGTCCCACGGTAATATCCTGCTGACCACCCTGGAGATCCATAACGAGGTGGCAGGAAATGAGGTCACCACCAGCCTGGCGGACAGCAGGAACTCCTCCGTCATGGGATTTGACAACACCAGCACAGGTACCGGCGTCCAGTGCAGGAAGGCGAGCCGGTCCTCGGGTCCTCGCCACAGCCTCGACAGGCACGCCCAGCTCAAGAGGCACAAATTGCGGCGGCGCTCGTCGCAGCTCAAAATCAAAATCCCTGACCTGACGGACGTAAACGCCATCGACAGGTGGTCGCGGATTATCTTCCCCTCCGTTTTCTCCCTCTTTAATCTAATCTACTGGATGTATTATGTCAACTGATTGACTGATTTTAGGGTTAGGTGGTGTTAAgagtattttaattttttttcccTTCGTCATTGTTTTGTCTTTTTTACGCGACAGGAAATGTTTTGCTATCGAGAAACAAAGGACTGCCTCTATATGGCACAGACAAAATTATTTGACTTCTTTGTTAAAGTTTTTATATTTGCAGTCATACTCAAATTATGGATTGCGGTGGATTGCTAATTCTTAAAATGGTGTACAGAACTATGTGCATAAATACCCATACCGtaggactggtactgtatatttcccaGTAGTCTTGCCCCTCTGTAGTTTGATAATGGAGATCTTTATACCCAATTCAATATTTGCAAGAAAGAAAAGGTCATTCttacattgttttttttgtttttttaacaaacccaaataaaataaaaatgttatgtAATGTATTACACTTGAAAATTATATTATCTGACcaagacaaaaaatatatataca
>XM_021608719.2
CTGGAGTGAGCGGGGTTGGCTCCAATCCAAGCCATTACCTTTACTGCCTCCACCGGTGGAGTCTTTGCCAGTAGCCTACATACATTTCAGTGAGGAGTATAGTTCTTTCATGTCTCCCGGttgcatagagagagaggagagaaatccGAAATACGAGGGATGTCAAACCGAACAGATCTGAAGGGTGTGAAAAGCCAACGACTTCCTCCACGAGAACTTGCCAATGGAATAATCTGATTTGTAAACATATTGTACCGTTTTTGCGTTGCACTTTTTTCCCCACCTAAACAGTAAGGAATGTGGGCTTTTCTGAGTGGAAAATTATTTAGTGTTCTTTCAGCACCAGTGATTGTAGCTGTCGTTTGTTGCGCACAAAGcgTGAATGAACCAGGGAACATGTCTTTTGTGAAAGAGACGGTGGACAAACTACTAAAGGGATATGATATTCGTCTTCGACCAGACTTTGGAGGGGCCCCTGTTGCAGTTGGCATGAGTATAGATGTGGCGAGCATAGACATGGTATCCGAAGTCAACATGGACTACACTTTAACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACTTAGGGATCCCACTGAACCTCACCCTGGATAACCGGGTAGCAGATTCACTCTGGGTCCCTGACACCTACTTCCTGAATGACAAGAAGTCCTTCGTCCACGGTGTGACGGTCAAGAACCGCATGATCCGCCTCCACCCGGATGGAACAGTGCTCTACGGCCTGAGGATCACAACGACGGCAGCCTGTATGATGGACCTGAGGAGGTACCCTCTGGACGAGCAGAACTGCACTCTGGAGATCGAGAGCTATGGATACACGACAGATGACATTGAGTTCTACTGGAAGGGAGGAGACAATGCGGTGACGGGGGTGACACGCATTGAGCTGCCACAGTTCTCCATAGTGGACTACAAGCTGGTGTCCAGAAATGTTGTCTTTTCCACAGGTGCCTACCCACGACTGTCTTTGAGCTTCAAGCTAAAGAGGAACATCGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATCTTGTCCTGGGTCTCCTTCTGGATCAATTACGATGCCTCGGCTGCAAGAGTGGCATTAGggatcaccactgtgcTCACCATGACCACCATCAACACCCATCTGAGAGAGACGCTCCCCAAGATCCCCTACGTCAAGGCCATCGACATGTACCTGATGGGCTGCTTCGTCATGGTCTTCCTGGCCCTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGACCACAAATGCAGAAGAAGCTGGCAGAGAAAGCCGAGAGGGCCAACAATGAGAGGGCGGCCAAATATGACACCAATCGGTCTCCTCAGGAAGGAGGTAAAACGTCATCTCTTAAGCTGACTAAGCAGCCTAATAGAGCAAAAACGCTCCGTGTCTCACAGTCGGCGGAGTCCCACGGTAATATCCTGCTGACCACCCTGGAGATCCATAACGAGGTGGCAGGAAATGAGGTCACCACCAGCCTGGCGGACAGCAGGAACTCCTCCGTCATGGGATTTGACAACACCAGCACAGGTACCGGCGTCCAGTGCAGGAAGGCGAGCCGGTCCTCGGGTCCTCGCCACAGCCTCGACAGGCACGCCCAGCTCAAGAGGCACAAATTGCGGCGGCGCTCGTCGCAGCTCAAAATCAAAATCCCTGACCTGACGGACGTAAACGCCATCGACAGGTGGTCGCGGATTATCTTCCCCTCCGTTTTCTCCCTCTTTAATCTAATCTACTGGATGTATTATGTCAACTGATTGACTGATTTTAGGGTTAGGTGGTGTTAAgagtattttaattttttttcccTTCGTCATTGTTTTGTCTTTTTTACGCGACAGGAAATGTTTTGCTATCGAGAAACAAAGGACTGCCTCTATATGGCACAGACAAAATTATTTGACTTCTTTGTTAAAGTTTTTATATTTGCAGTCATACTCAAATTATGGATTGCGGTGGATTGCTAATTCTTAAAATGGTGTACAGAACTATGTGCATAAATACCCATACCGtaggactggtactgtatatttcccaGTAGTCTTGCCCCTCTGTAGTTTGATAATGGAGATCTTTATACCCAATTCAATATTTGCAAGAAAGAAAAGGTCATTCttacattgttttttttgtttttttaacaaacccaaataaaataaaaatgttatgtAATGTATTACACTTGAAAATTATATTATCTGACcaagacaaaaaatatatatac
>XM_021608717.2
TGTTGTACTGAGTCATATTTCCTCTTGTCGTTCCTCTTGCCCCAGGAATGCAGTCGATGGAAACAAGAAGTTGTTTGCAATCTATGATACCAGcgTGAATGAACCAGGGAACATGTCTTTTGTGAAAGAGACGGTGGACAAACTACTAAAGGGATATGATATTCGTCTTCGACCAGACTTTGGAGGGGCCCCTGTTGCAGTTGGCATGAGTATAGATGTGGCGAGCATAGACATGGTATCCGAAGTCAACATGGACTACACTTTAACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACTTAGGGATCCCACTGAACCTCACCCTGGATAACCGGGTAGCAGATTCACTCTGGGTCCCTGACACCTACTTCCTGAATGACAAGAAGTCCTTCGTCCACGGTGTGACGGTCAAGAACCGCATGATCCGCCTCCACCCGGATGGAACAGTGCTCTACGGCCTGAGGATCACAACGACGGCAGCCTGTATGATGGACCTGAGGAGGTACCCTCTGGACGAGCAGAACTGCACTCTGGAGATCGAGAGCTATGGATACACGACAGATGACATTGAGTTCTACTGGAAGGGAGGAGACAATGCGGTGACGGGGGTGACACGCATTGAGCTGCCACAGTTCTCCATAGTGGACTACAAGCTGGTGTCCAGAAATGTTGTCTTTTCCACAGGTGCCTACCCACGACTGTCTTTGAGCTTCAAGCTAAAGAGGAACATCGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATCTTGTCCTGGGTCTCCTTCTGGATCAATTACGATGCCTCGGCTGCAAGAGTGGCATTAGggatcaccactgtgcTCACCATGACCACCATCAACACCCATCTGAGAGAGACGCTCCCCAAGATCCCCTACGTCAAGGCCATCGACATGTACCTGATGGGCTGCTTCGTCATGGTCTTCCTGGCCCTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGACCACAAATGCAGAAGAAGCTGGCAGAGAAAGCCGAGAGGGCCAACAATGAGAGGGCGGCCAAATATGACACCAATCGGTCTCCTCAGGAAGGAGGTAAAACGTCATCTCTTAAGCTGACTAAGCAGCCTAATAGAGCAAAAACGCTCCGTGTCTCACAGTCGGCGGAGTCCCACGGTAATATCCTGCTGACCACCCTGGAGATCCATAACGAGGTGGCAGGAAATGAGGTCACCACCAGCCTGGCGGACAGCAGGAACTCCTCCGTCATGGGATTTGACAACACCAGCACAGGTACCGGCGTCCAGTGCAGGAAGGCGAGCCGGTCCTCGGGTCCTCGCCACAGCCTCGACAGGCACGCCCAGCTCAAGAGGCACAAATTGCGGCGGCGCTCGTCGCAGCTCAAAATCAAAATCCCTGACCTGACGGACGTAAACGCCATCGACAGGTGGTCGCGGATTATCTTCCCCTCCGTTTTCTCCCTCTTTAATCTAATCTACTGGATGTATTATGTCAACTGATTGACTGATTTTAGGGTTAGGTGGTGTTAAgagtattttaattttttttcccTTCGTCATTGTTTTGTCTTTTTTACGCGACAGGAAATGTTTTGCTATCGAGAAACAAAGGACTGCCTCTATATGGCACAGACAAAATTATTTGACTTCTTTGTTAAAGTTTTTATATTTGCAGTCATACTCAAATTATGGATTGCGGTGGATTGCTAATTCTTAAAATGGTGTACAGAACTATGTGCATAAATACCCATACCGtaggactggtactgtatatttcccaGTAGTCTTGCCCCTCTGTAGTTTGATAATGGAGATCTTTATACCCAATTCAATATTTGCAAGAAAGAAAAGGTCATTCttacattgttttttttgtttttttaacaaacccaaataaaataaaaatgttatgtAATGTATTACACTTGAAAATTATATTATCTGACcaagacaaaaaatatatatac
>XM_021608720.2
ATGTGGGCTTTTCTGAGTGGAAAATTATTTAGTGTTCTTTCAGCACCAGTGATTGTAGCTGTCGTTTGTTGCGCACAAAGcgTGAATGAACCAGGGAACATGTCTTTTGTGAAAGAGACGGTGGACAAACTACTAAAGGGATATGATATTCGTCTTCGACCAGACTTTGGAGGGGCCCCTGTTGCAGTTGGCATGAGTATAGATGTGGCGAGCATAGACATGGTATCCGAAGTCAACATGGACTACACTTTAACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACTTAGGGATCCCACTGAACCTCACCCTGGATAACCGGGTAGCAGATTCACTCTGGGTCCCTGACACCTACTTCCTGAATGACAAGAAGTCCTTCGTCCACGGTGTGACGGTCAAGAACCGCATGATCCGCCTCCACCCGGATGGAACAGTGCTCTACGGCCTGAGGATCACAACGACGGCAGCCTGTATGATGGACCTGAGGAGGTACCCTCTGGACGAGCAGAACTGCACTCTGGAGATCGAGAGCTATGGATACACGACAGATGACATTGAGTTCTACTGGAAGGGAGGAGACAATGCGGTGACGGGGGTGACACGCATTGAGCTGCCACAGTTCTCCATAGTGGACTACAAGCTGGTGTCCAGAAATGTTGTCTTTTCCACAGGTGCCTACCCACGACTGTCTTTGAGCTTCAAGCTAAAGAGGAACATCGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATCTTGTCCTGGGTCTCCTTCTGGATCAATTACGATGCCTCGGCTGCAAGAGTGGCATTAGggatcaccactgtgcTCACCATGACCACCATCAACACCCATCTGAGAGAGACGCTCCCCAAGATCCCCTACGTCAAGGCCATCGACATGTACCTGATGGGCTGCTTCGTCATGGTCTTCCTGGCCCTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGACCACAAATGCAGAAGAAGCTGGCAGAGAAAGCCGAGAGGGCCAACAATGAGAGGGCGGCCAAATATGACACCAATCGGGCGGAGTCCCACGGTAATATCCTGCTGACCACCCTGGAGATCCATAACGAGGTGGCAGGAAATGAGGTCACCACCAGCCTGGCGGACAGCAGGAACTCCTCCGTCATGGGATTTGACAACACCAGCACAGGTACCGGCGTCCAGTGCAGGAAGGCGAGCCGGTCCTCGGGTCCTCGCCACAGCCTCGACAGGCACGCCCAGCTCAAGAGGCACAAATTGCGGCGGCGCTCGTCGCAGCTCAAAATCAAAATCCCTGACCTGACGGACGTAAACGCCATCGACAGGTGGTCGCGGATTATCTTCCCCTCCGTTTTCTCCCTCTTTAATCTAATCTACTGGATGTATTATGTCAACTGA

Function

NR:

description
gamma-aminobutyric acid receptor subunit beta-3-like isoform X4

GO: NA

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982864.1 False 2399 mRNA 0.47 9 19851804 19881463
XM_021608719.2 False 2288 mRNA 0.47 10 19851805 19881452
XM_021608717.2 False 2004 mRNA 0.48 10 19851805 19881758
XM_021608720.2 True 1440 mRNA 0.53 9 19852272 19881155

Neighbor

gene id symbol gene type direction distance location
LOC110527445 nfip2 coding downstream 19233 19823631 ~ 19832571 (-)
LOC110527441 NA coding downstream 670714 19176035 ~ 19181090 (-)
LOC110527100 NA coding downstream 697205 19145757 ~ 19154599 (-)
LOC118965376 NA coding downstream 706230 19142146 ~ 19145574 (-)
LOC110527440 LOC106575280 coding downstream 782966 19062829 ~ 19068838 (-)
cfap221 cfap221 coding upstream 115598 19997356 ~ 20017679 (-)
LOC110527451 LOC106575269 coding upstream 146876 20028634 ~ 20038269 (-)
LOC110528808 steap3 coding upstream 156722 20038480 ~ 20046983 (-)
LOC110527101 LOC106575264 coding upstream 168245 20050003 ~ 20055651 (-)
LOC110527454 NA coding upstream 283517 20165275 ~ 20173637 (-)
G583186 NA non-coding downstream 195 19847720 ~ 19851609 (-)
G583223 NA non-coding downstream 7975 19843434 ~ 19843829 (-)
G583188 NA non-coding downstream 28308 19819710 ~ 19823496 (-)
G583190 NA non-coding downstream 37306 19812037 ~ 19814498 (-)
G583206 NA non-coding downstream 60987 19790579 ~ 19790817 (-)
G583255 LOC108249475 non-coding upstream 7631 19889389 ~ 19892589 (-)
G583260 NA non-coding upstream 12539 19894297 ~ 19894565 (-)
G583277 LOC106563719 non-coding upstream 30501 19912259 ~ 19914265 (-)
G583337 NA non-coding upstream 114570 19996328 ~ 19996532 (-)
G583388 NA non-coding upstream 143999 20025757 ~ 20026150 (-)
G581174 LOC101077481 other downstream 1616766 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 1808424 18042927 ~ 18043380 (-)
G580487 NA other downstream 2451268 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3051118 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 3290659 16559930 ~ 16635251 (-)
G583661 NA other upstream 333891 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 891109 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 956730 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 1539696 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 1635637 21513832 ~ 21583054 (-)

Expression


Co-expression Network