LOC110527447 (LOC106575273)


Basic Information

Item Value
gene id LOC110527447
gene name LOC106575273
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19882568 ~ 19915181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608721.2
ATAGGCAGTACTCTGGAGGCAGCAGTACCATGTGCATTAAAGCTATAATAAGCGGTCATTTTCTTCTCAACAAAGCTGACGCATTTCCCACTGAATGAGAGAAAAAGCTAGGTAAACAGAGAGGACCAAAATTGAACATGTAGCTGAATAGGTAAACCGTTTTATTGGGTCCTTGGGATATAgccttgtttttttcttcttctggatGGATCAACCCACTGCCCCTCATTCATTAAATTGATTTCGACTAGACAGTATATTAGCTTGCGGGAGAGGATTACGTTTCAACTAATCACAGCAATGTGCATAGGCTAGAGTAGCCTACAGTGGCAAGTAAGATAACAGGGGAAAGTTAAGTGACGCTTGGAGTTCCTGGAGGATCGTTTTCACTGTCGCACCTATGATAACGCACCGGTTAGCAAATCGTTgcagtgtgtgcatgtgagcGGCAACTGGAGGTGAGTGTGATTTCTGATTTAGATGGGGCGCCGGGCCGCTAGTCCGCTCTGAGTGGACAAATTACTTGAGACCAAGGGTATGTGACACGAAAAACGTTGTTGTCACGACCAAAGATGAGTGCTCGGCATTAAAACCTCTCATCTCCAAAAGGCGGGAAGGAGGTGGCAGCACAAGACGCAAACATCTGCTTGACATGAGTAGGAAGTCAGTCAAGCAAATCAGGAGAGAACAATACACGATCGAGACTGCCTGCGGTGGCAAATATAAACGGAGCATATCTATATCCCTCTGAAGGAGCAGCAGCATACCCTTGACTTTCATTGCTGCGGGTTTTGTATCGTTTTCTAACCTGGATTTAAATCAAGAAGATGGCTCTCTCTACAGACATAGAGGACAAAATGCCCAGCTTTTCTACAATGAAACACGTGTGGATCTCTGTCTTGCTGGTGTGTATTACATGTCACGTGGGTCTTGGCCAGACCACAGCAGAGGCATTGAAAGAGGCAGAGGCTAATGACAACATCACCATCTTCACACGGATACTGGACGGACTGCTGGACGGCTACGACAACAGACTCAGACCAGGACTTGGAGAAAAGGTCACGGAGATCAAAACCAATATATTTGTCACAAGCTTTGGCCCAGTTTCAGATACTGAAATGGAATACACCATCGATGTGTTTTTCCGACAAAGCTGGAAAGATGAGCGCCTGTGTTTCAAAGGACCCATGGAGATGCTGCCTCTGAACAACCTCCTGGCCAGTAACATCTGGACCCCAGACACATTCTTCCTCAACGGGAAAAAGTCTATCGCCCACAACATGACGACACCGAACAAGCTACTGAGACTGAAGGATGACGGGACGCTGCTCTACACTATGAGGTTAACCATATCGGCAGAGTGTCCCATGCAGTTGGAGGACTTCCCAATGGATGCTCATGCTTGCCCTTTGAAGTTTGGAAGCTaTGCCTATCCAGTCTCTGAGGTGGTGTACCTCTGGCAAACCGGTGCTGCCAAGTCTGTAGTGGTGGCAGAAGATGGATCCCGTCTCAACCAGTACCACCTGATTGGCCAGACCGCAGGCTCTGAGGACATCTACACCAGTCGAGGACAGTACACAGTCATGATGTGTCACTTCTACCTGAAGAGGAAGATTGGTTACTTTGTCATTCAGACCTACATGCCATGCTTCATGACCGTGATCCTGTCCCAGGTGTCCTTCTGGCTCAACCGTGAATCTGTACCAGCCAGGACCGTTTTTGGTGTCACTACAGTGCTGACTATGACTACTCTCAGTATCAGCGCTCGCAACTCGCTGCCTAAGGTGGCCTACGCCACAGCCATGGATTGGTTCATCGCTGTGTGCTATGCGTTCGTCTTCTCCGCGCTTATCGAGTTTGCCACCGTCAACTATTTCACCAAGAGGAGCTGGGCGTGGGATGGCAAGAAGGCCATGGAGGCTCAGCACCCAAAGAAAAGGGACCCTATGGTGCTTTCTAAGAAGCCCAACAACGTCTGTACAGCAGGAGTGAACTACACCCCCAACATCACTAAGGATATCTCTATCTCCACCATCTCCAACAGCACCTCCATACAACTAAGATCGTCTGAAACAGAAGTCCTGGACCCCAAGAAAACCTACAACAGCGTGAGCAAAATCGACAAAATGTCCCGGATAGTTTTCCCTGTCCTATTTGGAACCTTTAACCTAGTGTACTGGGCTACCTACCTCAACAGAGAACCGGTCATCAAAGGAGTCAACATATTGGCTCCAACATAGTGTCTTTGTCAAACACACGACCCTACCTTCAACCGTATTGGCCTACAAGCTGCTGAAGAAAATGATACTGTGTCACAAAGGATGGGAGATGGGTTCTGTCTTTCTCATACTGTCATTTGCATGAAGCTTTTTAGAGAGATACTCTACCCATGTTTGCCTTGATATTCCCTCTTTATACCTACTGTACATTGCTTTAATTCAACAATGACATTTTGAAAGTGAAAATCAATGGCATTTTGAAAGTGAAACTCGACAAGGACCTTTTGAAATGCTGCAGTGTGGACATTTGTCCTGGCCTCAAATGAATTGAAAACGGTCATGGcatttatgttgttgtttataacCCTGTCATCTTGAAGAATAGGAGACTGAGAAACACATGCTGTGTTCGTAGTATGAAGTAAGATAGCGGAAGCTAGGATGTTACGGAAAGTGGTGAATAATGATTTTCAGTGTCATTTCCAGTCAATTTGTGAAGTTTGTATAATGCTGCGGACAAATCTCTCTTATCTCTATTGGATACATACGTTGTTATACTTTTGTCATTTTTGCCCATCTCACATGTACTGTTTGTACAATTTAAAATGTTACTATTTCTTACCTCTATCTATATAATGTACAGATTAATAATTTTTGACAAACGTGGGTCTAACTGTGGAGACAGAGCCCAAATAAGCTAGCAAGATACAACGCTGTGATGTAATTGATGATACAGTCTAATCAACCTAGGTGAAAGTGCACAGTCGGAACATTCTAATCATTACCAAGTTATAAAATGGTTGGTTGATTAGGTCTGACTTTTTCAATTGCAATGAAAGTGTTTTCCCTAAGCTAGAGGGAGAGGGTGCCTACTTTGAAGTATTGAGCTGCCCTTTGGTGTGAAAGGTTGAACTCATGTACTGTAACAGGATACGTTTTCCTTAGGCATcaaaacggactgaaacaggaagggactTCCTGGATTTGTCCAGTAAGAAACACTTATTTTCCgtttcaaaacattttgctaccatttgccctactgaacacagccCTCCTACACTGCTGTCCTATCCTCATTGTGTCATGACCAGATTGGCCCCAGTCCCTGAAGTCCGCTAGGATCTAATTAGCCTGGGATAATGAGCTTGTACCTGTTAAACACTATCTGATATGGCCCCTGGAGAGAGAACCAACCACATGGGGACGACCACCCACCCTCACCCCAGGCCCAGAGCGCTTTGTTCAGGGTACGGGAAGGAGAGCATGTGGGTATGGCTCTGGGGCACGGTGCCTCTGTGGTAACACCTACTTTCTTGTTACAGACTcaagagactgagagactgtatcttttttttttaaagagagaaagaagaataaTGTATGAAACAAGAAAGAATAAGTTTGTGCTTCAAGGTCTCCATACTGGGAAGAAAAAATAATCCCTACTTCAGTAAAAGATGGAGATACAGCCTATATGTAACAAGCTGTTGCTTAGAATCATGTAAACTCGTCGACACAGCAtgtacagagagagaatagatggaTAATTATGGATATGATATTGGTGACGGATGGATAATTTAAATGTCACTGACGTTACAGTTCTCATTAAAGTATCATGTTGTAGATAATGCAATAActacatgtattattattattattttatattcaAATCTCCTAGGCAACAAAGACATTCTTCGTGTATATAGAGAGTGACTAAAATACTTCTTTATTTGTATGTCTCTATGTGACATCTTGTGTTAAAGGAATaatccacacaaaaaaaaacgtgtatgtatttttttcattagtccactatTGACACAGTCCCAAaattgttttgcatgtcagcaaacATGTTTTCAAGATAAAGGACTTTCACAAAGTAAATTGCCACTAGCCACACCATTACATGCTGTTATTCCAAAACAAATCAAACCTATTTATTGTAATTTCAGATACAGTATATTAATTAGTTATGTGTACTATTCTCCTTGTACTGGTGTAAATGTGTACATAATTTGAGGTTGcagtcaaatgtttttattttgttaaGCACTTGACAATGAAGCATCCCTCTGAAAGAAAATCCACCAATCAGACTTAGAGTACATCTTAAAGGGGACAAATGGAACATGACCCCATGGAGGTGTCATGTATGAGCTATCCCTTGTCACTAATAGCAACTAGcaaaggatgggagaggaggggactgCACTGATGACTCGATGGATTACAGAAATACTGGCCCAGGAGGTCCTGttgtgtagggagagagaggactgattcCATCCCACCAGTCACTGTGGCAGCCACATCTGCCATACATCTGTTTGTCAAGGATTTAGTTCCGCTTAAGTTGCTTTTCCATTCAGGAGCCCTGTGTGCTTCCCACCAATTTAAGCCCTAACTGATGACAAATGGTGGTGCTCCTATGGAGTGGACAGCTGCGGTGCGTGTTAGCAGGCAGGGAGAAATGTACAATTTCAATGCTACGCTGAGAAAAAGACACATGATAGCTCATCGATATGAGGGTGTAGCTTAGCATAGTGCATACACTACCACCCATGTGTGTGTCTGATGCATCAATGGATTATGTGACTAAAAAGTGTCAATAAATGTATGTACATTATTTGATTAAA
>TU665194
ACAGTCCCAAaattgttttgcatgtcagcaaacATGTTTTCAAGATAAAGGACTTTCACAAAGTAAATTGCCACTAGCCACACCATTACATGCTGTTATTCCAAAACAAATCAAACCTATTTATTGTAATTTCAGATACAGTATATTAATTAGTTATGTGTACTATTCTCCTTGTACTGGTGTAAATGTGTACATAATTTGAGGTTGcagtcaaatgtttttattttgttaaGCACTTGACAATGAAGCATCCCTCTGAAAGAAAATCCACCAATCAGACTTAGAGTACATCTTAAAGGGGACAAATGGAACATGACCCCATGGAGGTGTCATGTATGAGCTATCCCTTGTCACTAATAGCAACTAGcaaaggatgggagaggaggggactgCACTGATGACTCGATGGATTACAGAAATACTGGCCCAGGAGGTCCTGttgtgtagggagagagaggactgattcCATCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608721.2 False 4864 mRNA 0.43 10 19882568 19915181
TU665194 True 473 lncRNA 0.39 1 19914363 19914835

Neighbor

gene id symbol gene type direction distance location
LOC110527444 LOC106575275 coding upstream 94564 19782845 ~ 19788004 (+)
LOC110527443 LOC106575277 coding upstream 451693 19425365 ~ 19430875 (+)
LOC110527442 LOC106575278 coding upstream 689613 19183383 ~ 19192955 (+)
LOC110527438 LOC106575281 coding upstream 1301057 18523603 ~ 18581511 (+)
LOC110527437 LOC106575282 coding upstream 1386879 18404754 ~ 18495689 (+)
LOC110527448 LOC106574424 coding downstream 2264 19917445 ~ 19958310 (+)
LOC110528807 LOC106574429 coding downstream 104301 20017855 ~ 20028775 (+)
LOC110527452 LOC106575339 coding downstream 147795 20062976 ~ 20064980 (+)
LOC110527453 en1 coding downstream 178613 20093794 ~ 20098063 (+)
LOC118965349 NA coding downstream 246899 20162080 ~ 20162895 (+)
G583051 NA non-coding upstream 30982 19849292 ~ 19851586 (+)
G583079 NA non-coding upstream 71817 19810427 ~ 19810751 (+)
G583078 NA non-coding upstream 72850 19809357 ~ 19809718 (+)
G583072 NA non-coding upstream 79305 19802977 ~ 19803263 (+)
G583068 NA non-coding upstream 82731 19799615 ~ 19799837 (+)
G583379 NA non-coding downstream 110656 20025837 ~ 20026115 (+)
G583380 NA non-coding downstream 111184 20026365 ~ 20026866 (+)
G583381 NA non-coding downstream 111706 20026887 ~ 20027228 (+)
G583398 NA non-coding downstream 126320 20041501 ~ 20041702 (+)
G581976 LOC106581475 other upstream 905569 18976678 ~ 18976999 (+)
G580997 NA other upstream 1389659 18492227 ~ 18492909 (+)
G580365 NA other upstream 2065720 17813342 ~ 17816848 (+)
G580315 LOC106575303 other upstream 2201900 17670275 ~ 17680668 (+)
G580179 NA other upstream 2482035 17398793 ~ 17400533 (+)
G583605 NA other downstream 323730 20238911 ~ 20239797 (+)
G584643 NA other downstream 1165647 21080828 ~ 21082615 (+)
G585573 NA other downstream 2037848 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 2441402 22356500 ~ 22360232 (+)

Expression


Co-expression Network