LOC110527101 (LOC106575264)


Basic Information

Item Value
gene id LOC110527101
gene name LOC106575264
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20050003 ~ 20055651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984478.1
CATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGGATCCCATCGTGGTTGAGGAGCCCATCTCTCCACCAGCGAATCCCATCGTGGATGAGCTGCCCATCTTTCCACCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATaaaaaaagaaagacagacaTGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTTGCCAAATGGCCCAACATGGAGTTAACCCATATTCAATGAGAGCAGTAACAGGTGCTCCAATGAGCAAATATCCAGGTTATCCATGTACAACGACCAAAGCTGGGCCTGGAATATCAGACGCTTCCCTGGTTCACATGCTCAGACCTCTCTCACCGATGTTGGTGCCGGAAGATGATGGAGGATGGGACTCTGCTGGGGATCACATGTCCACCCCTGGGACTCCCTTCTACATGGGTTGACTCTTTCACTGGACCTTTGAAGCCCTTTAAGCTATTTTGCCCGAAGAAAAGGACGCAGTGGAGCATAGCATTTTTCTTTTTAAAATAAACTCAAGCATACCCCACTTGGTCTTAAAATAAACTTATAATAAAATCCAA
>XM_036984476.1
CATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGGATCCCATCGTGGTTGAGGAGCCCATCTCTCCACCAGCGAATCCCATCGTGGATGAGCTGCCCATCTTTCCACCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGGATCCCATCGTGGTTGAGGAGCCCATCTCTCCACCAGCGAATCCCATCGTGGATGAGCTGCCCATCTTTCCACCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATaaaaaaagaaagacagacaTGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTTGCCAAATGGCCCAACATGGAGTTAACCCATATTCAATGAGAGCAGTAACAGGTGCTCCAATGAGCAAATATCCAGGTTATCCATGTACAACGACCAAAGCTGGGCCTGGAATATCAGACGCTTCCCTGGTTCACATGCTCAGACCTCTCTCACCGATGTTGGTGCCGGAAGATGATGGAGGATGGGACTCTGCTGGGGATCACATGTCCACCCCTGGGACTCCCTTCTACATGGGTTGACTCTTTCACTGGACCTTTGAAGCCCTTTAAGCTATTTTGCCCGAAGAAAAGGACGCAGTGGAGCATAGCATTTTTCTTTTTAAAATAAACTCAAGCATACCCCACTTGGTCTTAAAATAAACTTATAATAAAATCCAA
>XM_036984477.1
CATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGGATCCCATCGTGGTTGAGGAGCCCATCTCTCCACCAGCGAATCCCATCGTGGATGAGCTGCCCATCTTTCCACCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGGATCCCATCGTGGTTGAGGAGCCCATCTCTCCACCAGCGAATCCCATCGTGGATGAGCTGCCCATCTTTCCACCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATaaaaaaagaaagacagacaTGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTTGCCAAATGGCCCAACATGGAGTTAACCCATATTCAATGAGAGCAGGTGCTCCAATGAGCAAATATCCAGGTTATCCATGTACAACGACCAAAGCTGGGCCTGGAATATCAGACGCTTCCCTGGTTCACATGCTCAGACCTCTCTCACCGATGTTGGTGCCGGAAGATGATGGAGGATGGGACTCTGCTGGGGATCACATGTCCACCCCTGGGACTCCCTTCTACATGGGTTGACTCTTTCACTGGACCTTTGAAGCCCTTTAAGCTATTTTGCCCGAAGAAAAGGACGCAGTGGAGCATAGCATTTTTCTTTTTAAAATAAACTCAAGCATACCCCACTTGGTCTTAAAATAAACTTATAATAAAATCCAA

Function

NR:

description
PREDICTED: proline-rich extensin-like protein EPR1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984478.1 False 2320 mRNA 0.49 11 20050003 20054501
XM_036984476.1 False 2698 mRNA 0.49 12 20050003 20055651
XM_036984477.1 True 2692 mRNA 0.49 12 20050003 20055651
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110528808 steap3 coding downstream 3020 20038480 ~ 20046983 (-)
LOC110527451 LOC106575269 coding downstream 11734 20028634 ~ 20038269 (-)
cfap221 cfap221 coding downstream 32324 19997356 ~ 20017679 (-)
LOC110527446 LOC106574421 coding downstream 168245 19851804 ~ 19881758 (-)
LOC110527445 nfip2 coding downstream 217432 19823631 ~ 19832571 (-)
LOC110527454 NA coding upstream 109624 20165275 ~ 20173637 (-)
LOC118965267 NA coding upstream 145949 20201600 ~ 20206635 (-)
LOC110527455 LOC106575263 coding upstream 162244 20217895 ~ 20265255 (-)
LOC110527456 LOC106575261 coding upstream 242022 20297673 ~ 20310091 (-)
LOC110527458 LOC106575259 coding upstream 271148 20326799 ~ 20337014 (-)
G583389 NA non-coding downstream 23137 20026650 ~ 20026866 (-)
G583388 NA non-coding downstream 23853 20025757 ~ 20026150 (-)
G583337 NA non-coding downstream 53471 19996328 ~ 19996532 (-)
G583277 LOC106563719 non-coding downstream 135738 19912259 ~ 19914265 (-)
G583412 NA non-coding upstream 557 20056208 ~ 20056415 (-)
G583427 NA non-coding upstream 10259 20065910 ~ 20066495 (-)
G583449 NA non-coding upstream 29664 20085315 ~ 20085516 (-)
G583461 NA non-coding upstream 35366 20091017 ~ 20091243 (-)
G583481 en1 non-coding upstream 38205 20093856 ~ 20098023 (-)
G581174 LOC101077481 other downstream 1814965 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 2006623 18042927 ~ 18043380 (-)
G580487 NA other downstream 2649467 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3249317 16797680 ~ 16800686 (-)
LOC110528867 LOC106575374 other downstream 3488858 16559930 ~ 16635251 (-)
G583661 NA other upstream 159998 20215649 ~ 20249985 (-)
otos2 LOC106575250 other upstream 717216 20772867 ~ 20778065 (-)
LOC110527470 LOC103366558 other upstream 782837 20838415 ~ 20839399 (-)
G585240 LOC106575179 other upstream 1365803 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 1461744 21513832 ~ 21583054 (-)

Expression

LOC110527101(LOC106575264) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110527101(LOC106575264) Expression in each Bioproject

Bar chart with 7 bars.
LOC110527101(LOC106575264) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network