LOC110527457


Basic Information

Item Value
gene id LOC110527457
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20301287 ~ 20315887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474135.2
GAAGTTACTTCCGCAATCACATGATGCGGAAGTTTAAAGTGGCTGACGAGACGCTGATCATAACGTTTGTTAAAGCATTTCTAATATCGCACATTATCAGAGGGGCATGTTGGTCCACGCTGATGTGATGACATCGTGCAGTTTCTGCAGTTCGGATGGCGGGACActaccgccaccagcctgtaccgttgacaccaggttGGATGGGTCcctggactcatgctgcttatgccaaatcttgactctgccatcagcatgacgcaacaggaacggGGATTCcttggaccaggcaatgttttcccACTCCTCAATTGTGCAGTAATAGTGAACGTGTGCCTTTCTCTtctttttagctgataggagtttaacccggtgtggtcgtctgctataatagcccatccgtgacaagtaTCAACAAGTTGTCTGTTCCGAGATCTCATTCTGCACACCGCTGTTGTATTGCGTTGTTATCTGTCTGGTTGTGGCCCACCTGTTAGCTTGCGTGATTCtggccattctccttcgacctctctcatcaacgagctgttttcgcccacaggactgccactgactggatgtttttttgtttgtcgcaccattctggggaaaccctagacactgtcgtgagTGAAAAGCCCAGGAGTTCGGCCATTTCGGAGATACTGGAATCgccgatcataccacgctcaaagtcgcttaggtcattAGTTTTGCCcaacgttcaatcgaacagtaactgaatgcctcaatgtctgtctgcctgctttatatagcaagctatagccacgtgactcactgtatagtaggagcgatccattttgtgaacagggtggtgtacctaataaactaacCAGTGAGTGTATATATTCATGAAAATAATGTCAGGTCACAACTCGCTGCTCTTAAAGCTGGaatctgcagttgaaacaataacaaagtggacACCCCACCTCTGTTTAGGTAAAAGCTTAGGGATGGGCCAAGAGAAAATGTCTCTATGGCCATCCCtaagctttttaccaaaacattttgttattgtggggtgtaaccactctcaaactcatagacagagctatggatgcaaagactgaccatacatgatatcaaaatgatagctttaaccatgttgaggcttgTTTATATTGTTTACAAAGTTTGGAGTAAAACAggcttatatttggggttctaATGGgctacaacagttgaactaagctcatgagagccttcagaaagtattcacacccctattagtttttccacattttgcctgaatttaaaatggattaaatttagattttgtgtcactgatctacacaaaataatgtCAACATGTTGTTCGAAATGCTTTTttgaaatgaataaaaaatgaatag
>TU665779
TTTAAAAATTATTTTCAAAACCAAAATCCTTAATTATGTTTTAATAATCAAACCAAAAAGCACTAcaatcgctcagcactagatacattacataatacaagCACAACAATATATATTGAAAGTCAATGGGATCATACCTCTGGGTGGAAGAAGATCTCAGGGCCGAGGAAGCGCTCGTAGCCCACGTCGATGGTGAACTCTTTCTTGCTGATGGAGTTGATGCCCGTGTACTGCTTGATCCACTTAGAGCCGTCCGTATCGTACTTGTTGAACTCTTTCACCAGGTCAGGGCAGACATAACTGAACCTTTCCTTGACGGCTTTGGCTGTTTCCAATGACTGCTCTGGTGGGATGCCCACCTCCCGCTCTCTCAGCAGCTGCTGGGTGAAGTAGGTGATGTCTCGACCAGCGATGGGGATATGCTTTATACAGCTACCGATTACGTAGCCTTCCGCCACTGGGATGACGTGGGTGACCCCATCACCGCTATCAATCACCGTCCCTGTCAGTGTCCTCTCGCCCACTTGTCTGGAGGTCCATGAGGCTGCCAGCGCCAGGACCGCCTGTACAGCGATGTAAAGACCTGGAACATTGAAGGACTCAAACATAATCtctgctgtgtactctctgttttcaGGGGTATTCAGAGGGGGCTCTGTCAAGAGGAAGTAGTGGTCTTCGGGCTCTGCCCTCAGATACTTGAAGATGACCTGTTCCATGAACCTCTCCATGAGATCCCAGTCTTCCACGATCCCATGACGAATGGGCCACTTTGTTGCATAATTTGGTTTGTCTATTGCCTCGTCACCGATGTAAAAGTCCAGATCGTCCACCCCCTTCGTCATCCTGCGCTGGGCTTGGTCTCCAACCTTGGCCGACTCTTTGATGGCAATACATGAAGGAACAATAAACTGTGGCTCTGTGTTTCCAGCATATCCAATCTTTGTGTACCCTGTGCCACAGTCAACTACACAAGCCGGTAGACGTCCAGCCATGTTTCCTTAAATATCTACTGCAGAATGCAATGGTGAATTGCAGCTATATTCCAAATGGGTCTTATAAAAAGGAAAGTCGTTTGTTTTGGGTAGAGGGATAACcatttatttagctagctagtttagagGCGGAACCCTGAACCCGCAGAGTGAAGTTAC

Function

NR:

description
actin-related protein 3

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474135.2 False 1373 mRNA 0.43 2 20310063 20315887
TU665779 True 1154 lncRNA 0.48 8 20301287 20310070

Neighbor

gene id symbol gene type direction distance location
LOC118965349 NA coding upstream 147168 20162080 ~ 20162895 (+)
LOC110527453 en1 coding upstream 212000 20093794 ~ 20098063 (+)
LOC110527452 LOC106575339 coding upstream 245083 20062976 ~ 20064980 (+)
LOC110528807 LOC106574429 coding upstream 281288 20017855 ~ 20028775 (+)
LOC110527448 LOC106574424 coding upstream 351753 19917445 ~ 19958310 (+)
LOC110527460 LOC106575256 coding downstream 211541 20527428 ~ 20539663 (+)
LOC110527464 LOC106575252 coding downstream 318248 20634135 ~ 20658344 (+)
LOC110527471 LOC106574225 coding downstream 544917 20860804 ~ 20868580 (+)
LOC110527474 LOC106575156 coding downstream 553576 20869463 ~ 20873915 (+)
LOC110528809 LOC106575158 coding downstream 558365 20874252 ~ 20893679 (+)
G583634 NA non-coding upstream 31474 20278343 ~ 20278589 (+)
G583626 NA non-coding upstream 42924 20266895 ~ 20267139 (+)
G583591 NA non-coding upstream 60083 20215660 ~ 20249980 (+)
G583603 NA non-coding upstream 73481 20235661 ~ 20236582 (+)
G583600 LOC106575263 non-coding upstream 76649 20231581 ~ 20233414 (+)
G583818 NA non-coding downstream 127552 20443439 ~ 20443982 (+)
G583826 NA non-coding downstream 142166 20458053 ~ 20458350 (+)
G583830 NA non-coding downstream 149712 20465599 ~ 20465817 (+)
G583831 NA non-coding downstream 150518 20466405 ~ 20466640 (+)
G583871 NA non-coding downstream 233274 20549161 ~ 20578395 (+)
G583605 NA other upstream 70266 20238911 ~ 20239797 (+)
G581976 LOC106581475 other upstream 1333064 18976678 ~ 18976999 (+)
G580997 NA other upstream 1817154 18492227 ~ 18492909 (+)
G580365 NA other upstream 2493215 17813342 ~ 17816848 (+)
G584643 NA other downstream 764941 21080828 ~ 21082615 (+)
G585573 NA other downstream 1637142 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 2040696 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 2370602 22684527 ~ 22722539 (+)
G586685 NA other downstream 2694174 23010061 ~ 23015120 (+)
G583654 NA non-coding downstream 1803 20311873 ~ 20312177 (+)

Expression


Co-expression Network