XLOC_024872 (dus2)


Basic Information

Item Value
gene id XLOC_024872
gene name dus2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36249279 ~ 36263125 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048946
CGGATGATGAAGGTGATGATGGCGAACACTGTGGGAAGGCTGTGTTTCCGCCAGAAGAATATTCTGGCTCCTATGGTGCGGGTTGGAACTCTTCCCATGAGGCTTCTGGCTCTGGATTATGGAGCAGATATTGTTTACTGTGAGGAGCTGATTGATATTAAGATGGCCCAGTGTGAGCGAGTGGAAAACGATGTGCTGCAGACGATTGATTTTGTGGCTCCAGATGAGCGCGTGATGTTTCGCACCTGCAGTAAAGAGAGCGGTCGTGTGGTCTTTCAGATGGGAACGGCGGATCCAGAAAGAGCGCTGGCTGTGGCCAAACTTGTGGAGAATGATGTGGCGGCTGTGGATGTGAATATGGGCTGTCCAAAGGAATACTCCACAAAGGGAGGAATGGGTTCAGCGCTTCTCTCTGACCCTGAGAAAATTGAAGCTATTCTCACCACTCTTGTGAAAGGAATCTCAAAGCCTGTTACCTGTAAAATCAGGATCCTGTCAACAATTGAGGATACAGTGAATTTAGTGAAGAGAATTGAAAAGACGGGAGTGGCGGCCATTGCGGTTCATGGCAGGATGAAAGACGAGCGACCGCGACACCCGGTGCACTGTGACTACATCCAGGCTGTGGCCCAGAGCGTCTCCGTACCCGTCATTGCCAATGGCGGCTCTTCAGACATCGTGAAGGAGTTTGAGGACATCGAGACATTTCGGGAGTCGACTGGAGCTTCATCCGTCATGTTAGCTCGAGCCGCCATGTGGAATCCTTCAGTCTTCcggcagcagggggcgctgtctGTGGACCAGGTCATGCAGGAGTACATCACATACGCTGTTCGCTATGACAATAATCCATTTAACACCAAATACTGCTTATGTCAGATGCTCAGAGACAGAGTCGAGTCTCCATTTGGGAAGCGTTTGCATGCAGCTCAGACCAACCAGGAGATATGCGAGGTGTTTGGAATGACTGAGTTATTCAACAAAACCACAGCTGAACTGGAGTCCAGAAGAGCTTCTCTGCAGGCCAGTGAAGATCTGTCAGAAACTCCTGAACTAGAAGACGACGTGGTCATTATGCCGGTCCGCTTCGAACGgcGAGATTATCCTCCTCAGATCACACCCAAGATGTTCCTGCTGGAGTGGAGCCGCAAAGAGAAGCTTGAGCAGCCAGTTTATGAGACAGAGCAGCGCAGTCAGGATCGAGGCTTTCAGTCCACTGTTATTGTGGCCGATAAGAAATATCGCTCTACACTGTGGGAGAAGTCTAAGAAGTTTGCGGAGCAGGCCGCGGCTCTGGTGTGTTTGCGCACGCTTGGTCTCCCAGAGGGTCGAATCGGAGAGGAGCACAGCGGACTCGTAAACAAACGAAAGAGAGACGACAGAAAGACCACAGCGGCGGACAACGACGACGACGAGTCCCACGCGccaaagagacacacacacacactcccccaggaAGAGGAAGTGACATGCAGGACGAAAGTTGTGAATGGTGTTTGTGGTCAAACCGCACGCTAGCcagatgctcaacacacacacacacacacacacacacacgcattgcTGTTCACTTTTATCTGATCACACACTCACAGCTCTGAGTTTGCTTGTAAATTTGTCAAATCCGGTTGTCAAGTGCCACCTCAGTGTCTTCCTGTTGAGATGCTGGGTTATGCTTCAGTTCTTCTGCATAGAGGAttgatttcttatttttatttttttaattattattattattattattattattattattttgcgtTTCCGTCTTCCACCAGAAGGGGGCAGTAATTCACCATACAGTAAACAGCTCAAATTACACCATCAGCAGACTTCAGAGGTTTCTTTTTATTGTGTTTGTTGGCAATGTTTTTGAGAAATAAACCGTTTTAATTTTGCTTCTGAGTTGTTTCCTGCTTGTTTATGAGTTTAGTTGTTAAAATATAGTAAGCATCACAACATTTCTGATATTTTGTTATGGATATGAGGCTCAGAAGTGATGTGTTGCTAAAATAATATGACTATACCACACCATACATTGTTAGTAAGATGGAAAATGTATAAGTTTATTCATTATTGCTCTGGTTAGTCGCTATTAATcaatggtcgccacagcagaatgaactaccaacttatccagttttacACAGCTCCCATACACACAGGACCTGCGATTAAAGTCACACCcgaaagacagcgcccactgagcagtatagagtccccttgactgtactggggcgttaggacccacacagacagcaggttgagcgccccctgctggcctcactaatatc
>TCONS_00048947
CTCACTACAGCTGCGATGTAGTGCGACTTCAGCGCTGGATTCATCGGATGATGAAGGTGATGATGGCGAACACTGTGGGAAGGCTGTGTTTCCGCCAGAAGAATATTCTGGCTCCTATGGTGCGGGTTGGAACTCTTCCCATGAGGCTTCTGGCTCTGGATTATGGAGCAGATATTGTTTACTGTGAGGAGCTGATTGATATTAAGATGGCCCAGTGTGAGCGAGTGGAAAACGATGTGCTGCAGACGATTGATTTTGTGGCTCCAGATGAGCGCGTGATGTTTCGCACCTGCAGTAAAGAGAGCGGTCGTGTGGTCTTTCAGATGGGAACGGCGGATCCAGAAAGAGCGCTGGCTGTGGCCAAACTTGTGGAGAATGATGTGGCGGCTGTGGATGTGAATATGGGCTGTCCAAAGGAATACTCCACAAAGGGAGGAATGGGTTCAGCGCTTCTCTCTGACCCTGAGAAAATTGAAGCTATTCTCACCACTCTTGTGAAAGGAATCTCAAAGCCTGTTACCTGTAAAATCAGGATCCTGTCAACAATTGAGGATACAGTGAATTTAGTGAAGAGAATTGAAAAGACGGGAGTGGCGGCCATTGCGGTTCATGGCAGGATGAAAGACGAGCGACCGCGACACCCGGTGCACTGTGACTACATCCAGGCTGTGGCCCAGAGCGTCTCCGTACCCGTCATTGCCAATGGCGGCTCTTCAGACATCGTGAAGGAGTTTGAGGACATCGAGACATTTCGGGAGTCGACTGGAGCTTCATCCGTCATGTTAGCTCGAGCCGCCATGTGGAATCCTTCAGTCTTCcggcagcagggggcgctgtctGTGGACCAGGTCATGCAGGAGTACATCACATACGCTGTTCGCTATGACAATAATCCATTTAACACCAAATACTGCTTATGTCAGATGCTCAGAGACAGAGTCGAGTCTCCATTTGGGAAGCGTTTGCATGCAGCTCAGACCAACCAGGAGATATGCGAGGTGTTTGGAATGACTGAGTTATTCAACAAAACCACAGCTGAACTGGAGTCCAGAAGAGCTTCTCTGCAGGCCAGTGAAGATCTGTCAGAAACTCCTGAACTAGAAGACGACGTGGTCATTATGCCGGTCCGCTTCGAACGgcGAGATTATCCTCCTCAGATCACACCCAAGATGTTCCTGCTGGAGTGGAGCCGCAAAGAGAAGCTTGAGCAGCCAGTTTATGAGACAGAGCAGCGCAGTCAGGATCGAGGCTTTCAGTCCACTGTTATTGTGGCCGATAAGAAATATCGCTCTACACTGTGGGAGAAGTCTAAGAAGTTTGCGGAGCAGGCCGCGGCTCTGGTGTGTTTGCGCACGCTTGGTCTCCCAGAGGGTCGAATCGGAGAGGAGCACAGCGGACTCGTAAACAAACGAAAGAGAGACGACAGAAAGACCACAGCGGCGGACAACGACGACGACGAGTCCCACGCGccaaagagacacacacacacactcccccaggaAGAGGAAGTGACATGCAGGACGAAAGTTGTGAATGGTGTTTGTGGTCAAACCGCACGCTAGCcagatgctcaacacacacacacacacacacacacacacgcattgcTGTTCACTTTTATCTGATCACACACTCACAGCTCTGAGTTTGCTTGTAAATTTGTCAAATCCGGTTGTCAAGTGCCACCTCAGTGTCTTCCTGTTGAGATGCTGGGTTATGCTTCAGTTCTTCTGCATAGAGGAttgatttcttatttttatttttttaattattattattattattattattattattattttgcgtTTCCGTCTTCCACCAGAAGGGGGCAGTAATTCACCATACAGTAAACAGCTCAAATTACACCATCAGCAGACTTCAGAGGTTTCTTTTTATTGTGTTTGTTGGCAATGTTTTTGAGAAATAAACCGTTTTAATTTTG
>TCONS_00048948
gtggaggaaaccgaagcacccggaggaaacccctgccaacatggggagaacatgcaaactgcttCAATAAAGCTTAATAGGGCCACTTTAATGCATGTGCTGTTTACAAGTGCAAAATACCAGGCTTTTTTCTGTCTGCGTGTCTTCAGTGGCGGCTCTTCAGACATCGTGAAGGAGTTTGAGGACATCGAGACATTTCGGGAGTCGACTGGAGCTTCATCCGTCATGTTAGCTCGAGCCGCCATGTGGAATCCTTCAGTCTTCcggcagcagggggcgctgtctGTGGACCAGGTCATGCAGGAGTACATCACATACGCTGTTCGCTATGACAATAATCCATTTAACACCAAATACTGCTTATGTCAGATGCTCAGAGACAGAGTCGAGTCTCCATTTGGGAAGCGTTTGCATGCAGCTCAGACCAACCAGGAGATATGCGAGGTGTTTGGAATGACTGAGTTATTCAACAAAACCACAGCTGAACTGGAGTCCAGAAGAGCTTCTCTGCAGGCCAGTGAAGATCTGTCAGAAACTCCTGAACTAGAAGACGACGTGGTCATTATGCCGGTCCGCTTCGAACGgcGAGATTATCCTCCTCAGATCACACCCAAGATGTTCCTGCTGGA
>TCONS_00049449
TGCGACTTCAGCGCTGGATTCATCGGATGATGAAGGTGATGATGGCGAACACTGTGGGAAGGCTGTGTTTCCGCCAGAAGAATATTCTGGCTCCTATGGTGCGGGTTGGAACTCTTCCCATGAGGCTTCTGGCTCTGGATTATGGAGCAGATATTGTTTACTGTGAGGAGCTGATTGATATTAAGATGGCCCAGTGTGAGCGAGTGGAAAACGATGTGCTGCAGACGATTGATTTTGTGGCTCCAGATGAGCGCGTGATGTTTCGCACCTGCAGTAAAGAGAGCGGTCGTGTGGTCTTTCAGATGGGAACGGCGGATCCAGAAAGAGCGCTGGCTGTGGCCAAACTTGTGTGAGCCTAATTAGTGAATTTTATTGTTACTCTcatatacagttgcagtcagaattattcgccctcctgtatatttttccccaatttctgtttaatgaaaataagattttaataagcacatataatattgaccttaaaatgggttaaaacaaataaaagctgcttttattctagctgaaataaaacaaataagactttctccagaagaaaaaaataatattagaaaTACTTTGTTTGTAGCAGACCAAGTAAAGCATGTAGTGTTGCTGTAAATGCTGAATGTGTGTTTACTGTAGCTGTGTTTGATGAACAGGGAGAATGATGTGGCGGCTGTGGATGTGAATATGGGCTGTCCAAAGGAATACTCCACAAAGGGAGGAATGGGTTCAGCGCTTCTCTCTGACCCTGAGAAAATTGAAGCTATTCTCACCACTCTTGTGAAAGGAATCTCAAAGCCTGTTACCTGTAAAATCAGGATCCTGTCAACAATTGAGGATACAGTGAATTTAGTGAAGAGAATTGAAAAGACGGGAGTGGCGGCCATTGCGGTTCATGGCAGGATGAAAGACGAGCGACCGCGACACCCGGTGCACTGTGACTACATCCAGGCTGTGGCCCAGAGCGTCTCCGTACCCGTCATTGCCAATGGCGGCTCTTCAGACATCGTGAAGGAGTTTGAGGACATCGAGACATTTCGGGAGTCGACTGGAGCTTCATCCGTCATGTTAGCTCGAGCCGCCATGTGGAATCCTTCAGTCTTCcggcagcagggggcgctgtctGTGGACCAGGTCATGCAGGAGTACATCACATACGCTGTTCGCTATGACAATAATCCATTTAACACCAAATACTGCTTATGTCAGATGCTCAGAGACAGAGTCGAGTCTCCATTTGGGAAGCGTTTGCATGCAGCTCAGACCAACCAGGAGATATGCGAGGTGTTTGGAATGACTGAGTTATTCAACAAAACCACAGCTGAACTGGAGTCCAGAAGAGCTTCTCTGCAGGCCAGTGAAGATCTGTCAGAAACTCCTGAACTAGAAGACGACGTGGTCATTATGCCGGTCCGCTTCGAACGgcGAGATTATCCTCCTCAGATCACACCCAAGATGTTCCTGCTGGA
>TCONS_00048949
CGATGTAGTGCGACTTCAGCGCTGGATTCATCGGATGATGAAGGTGATGATGGCGAACACTGTGGGAAGGCTGTGTTTCCGCCAGAAGAATATTCTGGCTCCTATGGTGCGGGTTGGAACTCTTCCCATGAGGCTTCTGGCTCTGGATTATGGAGCAGATATTGTTTACTGTGAGGAGCTGATTGATATTAAGATGGCCCAGTGTGAGCGAGTGGAAAACGGGAGAATGATGTGGCGGCTGTGGATGTGAATATGGGCTGTCCAAAGGAATACTCCACAAAGGGAGGAATGGGTTCAGCGCTTCTCTCTGACCCTGAGAAAATTGAAGCTATTCTCACCACTCTTGTGAAAGGAATCTCAAAGCCTGTTACCTGTAAAATCAGGATCCTGTCAACAATTGAGGATACAGTGAATTTAGTGAAGAGAATTGAAAAGACGGGAGTGGCGGCCATTGCGGTTCATGGCAGGATGAAAGACGAGCGACCGCGACACCCGGTGCACTGTGACTACATCCAGGCTGTGGCCCAGAGCGTCTCCGTACCCGTCATTGCCAATGGCGGCTCTTCAGACATCGTGAAGGAGTTTGAGGACATCGAGACATTTCGGGAGTCGACTGGAGCTTCATCCGTCATGTTAGCTCGAGCCGCCATGTGGAATCCTTCAGTCTTCcggcagcagggggcgctgtctGTGGACCAGGTCATGCAGGAGTACATCACATACGCTGTTCGCTATGACAATAATCCATTTAACACCAAATACTGCTTATGTCAGATGCTCAGAGACAGAGTCGAGTCTCCATTTGGGAAGCGTTTGCATGCAGCTC
>TCONS_00048950
tccccaatttctgtttaatgaaaataagattttaataagcacatataatattgaccttaaaatgggttaaaacaaataaaagctgcttttattctagctgaaataaaacaaataagactttctccagaagaaaaaaataatattagaaaTACTTTGTTTGTAGCAGACCAAGTAAAGCATGTAGTGTTGCTGTAAATGCTGAATGTGTGTTTACTGTAGCTGTGTTTGATGAACAGGGAGAATGATGTGGCGGCTGTGGATGTGAATATGGGCTGTCCAAAGGAATACTCCACAAAGGGAGGAATGGGTTCAGCGCTTCTCTCTGACCCTGAGAAAATTGAAGCTATTCTCACCACTCTTGTGAAAGGAATCTCAAAGCCTGTTACCTGTAAAATCAGGATCCTGTCAACAATTGAGGATACAGTGAATTTAGTGAAGAGAATTGAAAAGACGGGAGTGGCGGCCATTGCGGTTCATGGCAGGATGAAAGACGAGCGACCGCGACACCCGGTGCACTGTGACTACATCCAGGCTGTGGCCCAGAGCGTCTCCGTACCCGTCATTGCCAATGGCGGCTCTTCAGACATCGTGAAGGAGTTTGAGGACATCGAGACATTTCGGGAGTCGACTGGAGCTTCATCCGTCATGTTAGCTCGAGCCGCCATGTGGAATCCTTCAGTCTTCcggcagcagggggcgctgtctGTGGACCAGGTCATGC
>TCONS_00048951
CTGCGATGTAGTGCGACTTCAGCGCTGGATTCATGTAAATATCTtcaatttcactCGGATGATGAAGGTGATGATGGCGAACACTGTGGGAAGGCTGTGTTTCCGCCAGAAGAATATTCTGGCTCCTATGGTGCGGGTTGGAACTCTTCCCATGAGGCTTCTGGCTCTGGATTATGGAGCAGATATTGTTTACTGTGAGGAGCTGATTGATATTAAGATGGCCCAGTGTGAGCGAGTGGAAAACGATGTGCTGCAGACGATTGATTTTGTGGCTCCAGATGAGCGCGTGATGTTTCGCACCTGCAGTAAAGAGAGCGGTCGTGTGGTCTTTCAGATGGGAACGGCGGATCCAGAAAGAGCGCTGGCTGTGGCCAAACTTGTGGAGAATGATGTGGCGGCTGTGGATGTGAATATGGGCTGTCCAAAGGAATACTCCACAAAGGGAGGAATGGGTTCAGCGCTTCTCTCTGACCCTGAGAAAATTGAAGCT
>TCONS_00048952
TGCGACTTCAGCGCTGGATTCATCGGATGATGAAGGTGATGATGGCGAACACTGTGGGAAGGCTGTGTTTCCGCCAGAAGAATATTCTGGCTCCTATGGTGCGGGTTGGAACTCTTCCCATGAGGCTTCTGGCTCTGGATTATGGAGCAGATATTGTTTACTGTGAGGAGCTGATTGATATTAAGATGGCCCAGTGTGAGCGAGTGGAAAACGATGTGCTGCAGACGATTGATTTTGTGGCTCCAGATGAGCGCGTGATGTTTCGCACCTGCAGTAAAGAGAGCGGTCGTGTGGTCTTTCAGATGGGAACGGCGGATCCAGAAAGAGCGCTGGCTGTGGCCAAACTTGTGTGAGCCTAATTAGTGAATTTTATTGTTACTCTcatatacagttgcagtcagaattattcgccctcctgtatatttttccccaatttctgtttaatgaaaataagattttaataagcacatataatattgaccttaaaatgggttaaaacaaataaaagctgcttttattc

Function

symbol description
dus2 Predicted to enable tRNA dihydrouridine synthase activity. Predicted to be involved in tRNA dihydrouridine synthesis. Predicted to act upstream of or within tRNA processing. Predicted to be active in cytoplasm. Orthologous to human DUS2 (dihydrouridine synthase 2).

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-100922-233 Predicted to enable tRNA dihydrouridine synthase activity. Predicted to be involved in tRNA dihydrouridine synthesis. Predicted to act upstream of or within tRNA processing. Predicted to be active in cytoplasm. Orthologous to human DUS2 (dihydrouridine synthase 2).

Ensembl:

ensembl_id ENSDARG00000077607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048946 False 2294 mRNA 0.47 15 36249279 36261836
TCONS_00048947 False 1942 mRNA 0.49 16 36249675 36263125
TCONS_00048948 False 629 lncRNA 0.50 4 36252084 36256144
TCONS_00049449 False 1475 lncRNA 0.46 13 36252084 36263104
TCONS_00048949 False 826 nonsense_mediated_decay 0.50 10 36254329 36263112
TCONS_00048950 False 721 lncRNA 0.45 6 36255844 36258733
TCONS_00048951 False 490 mRNA 0.50 7 36258300 36263115
TCONS_00048952 True 520 lncRNA 0.44 5 36258640 36263104

Neighbor

gene id symbol gene type direction distance location
XLOC_024871 nfatc3b coding downstream 1226 36219436 ~ 36248053 (-)
XLOC_024870 amfra coding downstream 31716 36197733 ~ 36217563 (-)
XLOC_024869 NA coding downstream 89800 36155630 ~ 36159479 (-)
XLOC_024868 NA coding downstream 96894 36139843 ~ 36152385 (-)
XLOC_024867 CU302251.1 coding downstream 190624 36058520 ~ 36058655 (-)
XLOC_024873 slc7a10b coding upstream 3657 36266782 ~ 36286186 (-)
XLOC_024874 faap24 coding upstream 24620 36287745 ~ 36292346 (-)
XLOC_024875 hist1h4l coding upstream 47125 36310250 ~ 36310561 (-)
XLOC_024876 si:ch211-113a14.22 coding upstream 98125 36361250 ~ 36361697 (-)
XLOC_024877 hist1h4l coding upstream 99522 36362647 ~ 36362958 (-)
XLOC_024862 NA non-coding downstream 337082 35905691 ~ 35912197 (-)
XLOC_024861 NA non-coding downstream 363796 35883577 ~ 35885483 (-)
XLOC_024883 NA non-coding upstream 462932 36726057 ~ 36790229 (-)
XLOC_024884 CU914144.1 non-coding upstream 471122 36734247 ~ 36734883 (-)
XLOC_024889 NA non-coding upstream 871661 37134786 ~ 37140107 (-)
XLOC_024891 FP312612.1 non-coding upstream 881843 37144968 ~ 37145083 (-)
XLOC_024895 NA non-coding upstream 949440 37212565 ~ 37215662 (-)

Expression


Co-expression Network