LOC110527463 (LOC106574441)


Basic Information

Item Value
gene id LOC110527463
gene name LOC106574441
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20583202 ~ 20587275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608738.2
CAAGGAAGGTCACAGTTATCGAAGATGGCGAAGTGTTGACAATAAGCCATATATTCTTACCAATATTACTATTTATTGAACAAGCTGggtaaaaacacatttttgtaaAGGTTTTTCATCTTCATAGTAGTTCTACAGTAGTTGTGACCGGTTTCACAAAACCAAGGGCTTAAAATGTCTGAGTCGAGTGTTTTGCATCAACGGATAAGCGCCGTCATGGACATTCTATCCTCCGCTGCGGTGACAGAGATTTGCAAATTAGTAGAGGATTGCTGTGGAGCGTTAAGTGTAGAAGTCTCTCAAAGCAAAGAGCAAATCAAAATGCTAGAGAAGCAACTCAGCCTGACCGAGTCGAGGTACATGTCGGTGAGTGGCGAAGGAGGTCAGACGCCTGTCAGCAGCGGCTCACCAATAAACAACAGTCCTTCGGGCAATTACCCCACGGCCGATGACGCGGACGACACTCACGATGACAAAGATTTCCAGCAGTTCATTGTCTCTGAAGTGGAGTTTCTCCCTGAGCAGCAGCATTGTAAGCAGGAGTTGAGCCCCATCCTGGGGCAAGATGACTGGAACCCCATacagattaaagaggaacaggaggaattcAGGATCATCCAGGAGGAGGAAGACTCTGTATTCACTCCTGCCTGGGTGAAAAGTGACTATGATCAGTACTCAACTCAGTCCTCACAAACCCAAAGTGAAGAATATGAAGACAGAATGGCCTCAACTGAACAGATCAAAACAGAACCTAAGGAAGATAATTCCTCAGAGCCAACAAGTGACTCTCATCCCCAGTGCAAATTGAAGAAGACATGGACAGAAATAGGGCAAAGCTCGAAGGGTAGAAAAACCATGGATCTAAGGTTACCAGTGCAAATGAGTCACACAGAAGAGAAACCATTTTGCTGTAGTGATTGTGGTGAACGTTTCACTCAGATGGGAAAATTGGATGCTCATAGGAAGGCCCACAAAGGAAAGAAACCGCATCGCTGTGATGATTGTGGCAAATGTTTTACTCAAATTGGGTATCTAAACTATCACAGAAAgactcacacaggggagaaacctcaTCGCTGTCATGATTGTGGCAAATGTTTCTATCGAGTTGGTGATCTGACACTTCATATGAGGATTCACACAGGGGAAAAACCACTTTGCTGCCAGGTCTGTGGCAAATGTTTTGCTCGTCCTAGTAATCTGAGGTCTCACATTAGGATTCACACAGAGAAATGTTATTCCTGTCATTATTGTGGCAAATATTTTCGGCGTAAAGATAGTCTGACCGTGCACATGAGGATTCACACAAGGGAAGTCATATAATTGTTGCTATAGTAGCACATCTTTCAGCACTGGCGGTAGTCACATGAGTTCATGTGAGGATAAATCACATGAGCTATAAACTATATCGCTGTCAGGATTGTTGTAAATGTTTCAATAATTGTAAGAATATGAGGAGACCAAGAGCAGGAACCACATGCTACCATGACTTGAAAATATTTCATAACTGCCTTTCTTtaacattagctaggtttccattcaattGGCGACAGATATTAATGTGAATATTCTAAATTCTGCATAAAGAAAATTTGCGAATTTTCCCACCAGTTTCCACCAAgcagacttgttgtggataaaaatCCGTGTGTGACGACGTGGTGCACACAATGTACATtttcgcttaagttttcatgtaccaaataaaaatctaactATGTgaatagttttgtcacaaa

Function

NR:

description
gastrula zinc finger protein XlCGF48.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608738.2 True 1742 mRNA 0.42 2 20583202 20587275

Neighbor

gene id symbol gene type direction distance location
LOC110527461 LOC106574439 coding downstream 23504 20540604 ~ 20578691 (-)
LOC110527462 LOC106575257 coding downstream 54309 20521527 ~ 20528893 (-)
LOC110527459 LOC106575258 coding downstream 65835 20337552 ~ 20517367 (-)
trnaa-ugc-21 NA coding downstream 151680 20431449 ~ 20431522 (-)
LOC110527458 LOC106575259 coding downstream 246188 20326799 ~ 20337014 (-)
LOC110527466 LOC106574444 coding upstream 66915 20654190 ~ 20676948 (-)
LOC110527467 LOC106574445 coding upstream 171729 20759004 ~ 20765110 (-)
otos2 LOC106575250 coding upstream 185879 20772867 ~ 20778065 (-)
LOC110527469 LOC106574449 coding upstream 193249 20780524 ~ 20837355 (-)
LOC110527470 LOC103366558 coding upstream 251140 20838415 ~ 20839399 (-)
G584137 NA non-coding downstream 25703 20542715 ~ 20557499 (-)
G584077 NA non-coding downstream 114598 20468397 ~ 20468604 (-)
G584069 NA non-coding downstream 131062 20451934 ~ 20452140 (-)
G584067 NA non-coding downstream 132689 20450280 ~ 20450513 (-)
G584233 NA non-coding upstream 112337 20699612 ~ 20699889 (-)
G584240 NA non-coding upstream 121703 20708978 ~ 20709240 (-)
G584243 NA non-coding upstream 126373 20713648 ~ 20713971 (-)
G584263 NA non-coding upstream 139878 20727153 ~ 20727414 (-)
G584453 NA non-coding upstream 149896 20737171 ~ 20737421 (-)
G583661 NA other downstream 333217 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2348164 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 2539822 18042927 ~ 18043380 (-)
G580487 NA other downstream 3182666 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3782516 16797680 ~ 16800686 (-)
G585240 LOC106575179 other upstream 834179 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 930120 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 1505537 22089741 ~ 22163995 (-)

Expression


Co-expression Network