LOC110527464 (LOC106575252)


Basic Information

Item Value
gene id LOC110527464
gene name LOC106575252
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20634135 ~ 20658344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982879.1
AAGGACGGTTCTTTTATACCTCAATTGAAAGAACCACAACACCACATTACACATCCTATAGTGTGTTGTCGAGCAGCATTGAGTAGCGTTCGATTGCAACTTGCCTCTTTATTTGAAGATGGCGCGAAAGCATGCATTCCGTTTCGACTTTGCATTTCAGATCTAAGCCTGAAGAAATGTCGATGTTCGCCGGAATGAATAGGGTTTGACTAGCTCAGGCCTCATCCTGAGCACTGCCAGGTCGGCTTCTAGGGGTCGCTGACGGGACCGGATCCCAGCTGCACCCACCATGACTCCCAGGTCCTCCACCATGACCCCAACCATGAAGCAGTGGAGGCAGCTGGTTCTGGTGGTGATGCTGGCCTGGCTCCTCATCTTCCTGGCCCTGCTCTCCCACTTCCTGGACCCCCGGGATGTGGATCTCCGCTCGCCCTCCTCGCTCACCCACACCGAGACCCGCCGTCTGGCCTCCATCCAGGGTAGTCCATCGGGCATCAGGGCTTCTCCTCTTGAGGTGACATCCTCATCTTCACCCGCCAACCAGGATCCCAGCCACAGCCAACAGGTTAAAAAGGAGGCCCTGGAGCTGAGCCAGAATGGTGACTTGGTGGTCTGGAAAAAGGTGAGCGACCAGGAGGAGAGGGTGTATCAGGAAAGGGAAGAgaagataaggagggagagactgagaaggaggaggaggaaagggagcaTGTCCAGGGCTGAGCAGCGGGGCAGAGACGGCTACTATTTATCCCAGTCCAAGGTAGTGGTCCAGCAGCTGCGAAGGGGCATTGCCTCAGCGGGAATGCTCGCTCCACACCTGCAGAAGTCCATGAGGGACTACCTGAATCTCAACAGACATCACGTGGCCTACAGGGGGCGGCGCAGGGGTAGGCAGAGCGGGAGGGAGGTACTCTGTGAACTGAAGGAGCAGGCCAGGTTGAGGACACTGGATGGGACAGAGCAACCCTTCTCTGGGCTGGCCTGGGACAGGCTAGTGCCCCCACGACCTCTGGAGCAGCTTTGGGGCCAGGGGTCAAAGTTCAAGTCGTGTGCGGTGGTCACCTCGGCCGGGGCTATCCTCAACTCTTCCCTAGGGAGAGAAATTGATTCCCATGAGGCTGTGCTTCGCTTCAACGCTGCTCCTACAGAGGGCTATGAGAATGACGTGGGCAACAAGACCACCATCCGCATCATCAACTCTCAGATACTTGCCCGGCCAAGGCATCGCTTCACCACCAGCTCTTTGTATAAGGGTATGACACTGGTGGCCTGGGATCCTGCACCGTACTCTGTGGACCTGCCCAGGtgGTACAGGAACCCAGACTATGACCTGTTCACCCCGTACGAGGAACGCCGGCGGCTCCACCCCACACAACCGTTCTACATCCTCCACCCCAAGTTTATCTGGCAGCTGTGGGACGTGATCCAGGGGAACACCCAGGAGAACATCCAGCCTAACCCCCCGTCCTCTGGGTTCATAGACCCCGTGGCAATTCCTGGAATCCCAGCAGGAGGGCTTGAGGGGGCTGTGTCATCCTGAGCACGTTACTGCgctaccaccacacacacacagaaagagaacaCACACTCACTGCCAGCAGCAGGACTCAGGACCATGACACACAGAATGATTTTATTTGGGTTGCAGTCCATTTTATTTAACTGTTTTTGGGTTACAGTTTATTAGGAAGTGAGAGGCAGTGCTGTTCAGTTTGTCATCTTGATGAAGACAAGCAAGTGCCGTATGATGGCTACAGCCAGCCACTATGTGGCAGCCCAATGGGGGTGCCAGGCTGTTTGACTGCCTGCTGGGAGCTTTAGACTTGTAGACTGAGGAACATGTCAACATGCAAAGCCAGATACTGCATGACTCAACACTACAGACACAGAAAGATGGTAACTTTAACAGGTTGCGGCTTTCGTACAACCCCTGGCTGTCATCCCGACATGCAAATATTGGTTGGATCAACACTGTTTCCACATTGTCATAACTGTAAACAACCTTTCAGTCAACTGACAATTGAACATTGTCATGATCTCTTTTGCCCAATGGGATGATGGCTTCAAGAGTGCAAGACAAGTGTTGCAAACATGAACACTTTCTGTTACACTTCTCCAACTGTTTCTGGTTTATTACCCTCCCCACCCTGCAGTGAAATTGAAAATCCCTTCACATTGTTTCCATACATTTAATACCAGTTTCGGTTGTAATTGCTAGCCAGTTTTACACAGATCACCCAGGTGCATCATTTATAAAAAAATTATTACGCACATATGATAGTTGGAATCCACAGCTATATAGTGATTTCATATATAGTGATATATATTGATTTAGCAACTTAGTGTGATCTAGAAATGATCATGATTGTGTGTGATTTACACCCTTCGACATGTGTATAAACATTGTGATTGTTCTTCCTATTGTTTCAAGAACTAATGGTATGCTGAAATGTAGAATAAAAACTGAGCAAACAAATGAGGCCCGAGGTGATTTGATCTCACAGATGAGGTACAAAGCATTCAGCTTCACCGGCATCATTCACATAGCTGCTTTAGAACAAATGAATAGATGGACTGTCTGTTATTGCTGTTATATGACAGCACACTGTAACAGTtatgacaaaatacttttttgaactGTAACAGTAATGACAACACTAAAGCCACTGCAGTCTTAATACAACTCTGGTGTCTATCGACGTAACACATGTAACAATATGATAACGGAAGTTGAGGAAAAATACACGTTTTGTTTTTAAGTAAACAACACCACACTGTTGCGTTTTCTCACGGCAAGACTTGACAGGAATTTATATCTACACCTTTACTGAGTGACAAAGTAACAGTTGACCATCTCTATGGGTTGGGGCGGTTGACACACCTTCTATAAcatggatcatcaactagattcagctgcgggcCGATGCACGGATGGTcggggggccagaacataattactgCCAACTGACAGCAAGAAGTCCAAACAGATATAACGTTTACTAAAGCATAATCATTTCTAAACAGGTTTCCAAACTTAAAATCCATTTCCGTTGATTTCATGTTCTTACAGTCTCATATCCAACGACAAAAataccacacaaaaaaaaaaatatattattatttatatttgccatgaacttggggggccaaataaatcCACCCGCAGGCCGCCAGCTGGGGTCCCCTGTTCTATAAGATACCGTGTAGTTTCTGGGGTGATGACGTGGAATAGATCACTTTGTTCGTAGAAGATATTGATAGTTCTCTGTCTGGGTAACGTTGTGGATTAGATCACTGACTGTGTGTTTAGAAGAGTTCTCTGGTGACACAACGTCGTGATGGATCATTTATGGATCATTTATGGGTAGTCTGTTGTTGAGGCGTTCTCATGATGACAAATCACTATGGGGAGTTGTTGGGTGATGCCACATGATATACTGTGTAGACTGAGTTTTTGGGCGACACCACATGACAAATGCCAGGGATAACACCATATCCTCTAGAGTTCTCGGTGGTGATCAC
>XM_021608739.2
AAGGACGGTTCTTTTATACCTCAATTGAAAGAACCACAACACCACATTACACATCCTATAGTGTGTTGTCGAGCAGCATTGAGTAGCGTTCGATTGCAACTTGCCTCTTTATTTGAAGATGGCGCGAAAGCATGCATTCCGTTTCGACTTTGCATTTCAGATCTAAGCCTGAAGAAATGTCGATGTTCGCCGGAATGAATAGGGTTTGACTAGCTCAGGCCTCATCCTGAGCACTGCCAGGTCGGCTTCTAGGGGTCGCTGACGGGACCGGATCCCAGCTGCACCCACCATGACTCCCAGGTCCTCCACCATGACCCCAACCATGAAGCAGTGGAGGCAGCTGGTTCTGGTGGTGATGCTGGCCTGGCTCCTCATCTTCCTGGCCCTGCTCTCCCACTTCCTGGACCCCCGGGATGTGGATCTCCGCTCGCCCTCCTCGCTCACCCACACCGAGACCCGCCGTCTGGCCTCCATCCAGGGTAGTCCATCGGGCATCAGGGCTTCTCCTCTTGAGGTGACATCCTCATCTTCACCCGCCAACCAGGATCCCAGCCACAGCCAACAGGTTAAAAAGGAGGCCCTGGAGCTGAGCCAGAATGGTGACTTGGTGGTCTGGAAAAAGGTGAGCGACCAGGAGGAGAGGGTGTATCAGGAAAGGGAAGAgaagataaggagggagagactgagaaggaggaggaggaaagggagcaTGTCCAGGGCTGAGCAGCGGGGCAGAGACGGCTACTATTTATCCCAGTCCAAGGTAGTGGTCCAGCAGCTGCGAAGGGGCATTGCCTCAGCGGGAATGCTCGCTCCACACCTGCAGAAGTCCATGAGGGACTACCTGAATCTCAACAGACATCACGTGGCCTACAGGGGGCGGCGCAGGGGTAGGCAGAGCGGGAGGGAGGTACTCTGTGAACTGAAGGAGCAGGCCAGGTTGAGGACACTGGATGGGACAGAGCAACCCTTCTCTGGGCTGGCCTGGGACAGGCTAGTGCCCCCACGACCTCTGGAGCAGCTTTGGGGCCAGGGGTCAAAGTTCAAGTCGTGTGCGGTGGTCACCTCGGCCGGGGCTATCCTCAACTCTTCCCTAGGGAGAGAAATTGATTCCCATGAGGCTGTGCTTCGCTTCAACGCTGCTCCTACAGAGGGCTATGAGAATGACGTGGGCAACAAGACCACCATCCGCATCATCAACTCTCAGATACTTGCCCGGCCAAGGCATCGCTTCACCACCAGCTCTTTGTATAAGGGTATGACACTGGTGGCCTGGGATCCTGCACCGTACTCTGTGGACCTGCCCAGGtgGTACAGGAACCCAGACTATGACCTGTTCACCCCGTACGAGGAACGCCGGCGGCTCCACCCCACACAACCGTTCTACATCCTCCACCCCAAGTTTATCTGGCAGCTGTGGGACGTGATCCAGGGGAACACCCAGGAGAACATCCAGCCTAACCCCCCGTCCTCTGGGTTCATAGGCATTGTCCTGATGATGTCGCTGTGCGAGGAGGTCCATGTCTATGAGTACATCCCTTCTCTGCGTCAGACAGACCTGTGCCACTACCACGAGCACCACTACGACCCAGCCTGCACCCTTGGGGCGTACCACCCCCTGCTCTTTGAGAAGCTACTGGTCCAGAGGATGAACAGCGCCTCCCAGCACGACCTCAAAACCAAGGGCAAGGTCACGCTGTCGGGGTTCAGCGCGATCAACTGTGGGCCATGACCCCTGACCTTTGACGACCTATGGCCATCAAGAGACAGAGAGTGCCGATACTAATCAAGCGACTGAAGAGGCTAAGTTGAGTCAGCACAGTCGTCCGTGGGCCATGATCTGGcttttgacctttgacctgggCTGCTGTCTGGAAAATCAGGATGaaagtgaagaggaggagagcgtTGCCACTACTAATCAATCTTAGGCTGTAGCGGCTAAGCGAGCATGCTTGAGAACTGCCTTTGTCACAATGGATAGTGTCAATTGTtgaaaggaggaggggagggggggggggggggggggggcgtttagGGAATGTGGAtatcatgttgttgtattgtgtcATGAAGTAGTCCTCCAGGGATGTATTCCTACTGGAGAGATGGGTCATCTTTTTAAGGTAATTGTCCTTGTGACACAATGTTGTACATGGGCGAGGTCTGGGTATGAACGTGGAAAAGTGATCTATAGATTCAAATATTGAACATCGGTCAAAGGCATGTTTTTCTGATTCAACGAATGAGGTGCATTGTCATGTTTAGAAACATTTGAAATAGAGAATTGAAAACATGCAGTGTAAAGGGTTTTACTTGCGAGGGTAGGTTTGAATTTAAGCAGTTCAAAAAGCATGTTGTGTTTCTttttgggaaaaaaaaaaaatattgcagaCCTCATTTGAGAAATTCAGGGATAGTAGTGTATGTAGGTCTATGAGGGAAAACAACCACTTTTCACTTTCTTTTGTTGTTGCATGAACCAGTCAACCTAACCACTgatctgtgtgtatgtgagtaAGGAACTGAAACTTTCTTATCAGTGTTCTCCTGTCCTCTGTACGTACGCTATTTAAAGTTACTGTACCTCAACGACCAGATGGTAAAACTGACAACAGTTACTTTTCCTGGCCTTGATATGATTCTACAGCCACACTGTAAATATACTGTGAATGTGGTTTGTTTGCCTGTAGAAGTCTGGTCAAGTGTAATGCAATGAATGTAGCTATGAATAGTTTGaggcacatttataaaaaaataaaaaataaaaacctttatttaactaggcaagtcggttaagaacagattcttatttacaatgatggcctaccctggccaagcctggtgtgcgccgctctatgggactgtagtgacgcctcttgcactgagatgcagtgccttagaccgctgcgccactcgggaacgcagcggtctaaggctttTGGCAATGGTGATATAGACTTGATAACGTGCCAAATGTTCCCTGTGTGAAGTTTACTGTTAGTTAACACTACGTCCTCTAGGAGTGAACCACTACAAAAGCAAAGCAGAGGCCTCAGCTTGGAATAATATAAATGGACAGAATGTCCTTACGATGATTCAGGAAGGGAATGCACCAAACACAGCAATAGAAATGTCATTTTTCTTTGGAATGATTTTTTTTGAGAAGTGTTTGCTAATCTACTGTTGAGGGTAAACACTATAATATTCACACCTTTTGGGATCTTTAAACAAAAATCATGTTGTTTTTACAGATCATTTTCTATAGCCAGAATCAGTTTGTACTGAACATAATTTGTTAGTTTGTATAAAATGTGTATTTCTTTTCCATTGTTTTCTACTTAAACTGTTGTGAATAAAGACATTGTACTTGCCTTGTGA

Function

NR:

description
beta-galactoside alpha-2,6-sialyltransferase 2-like

GO: NA

KEGG:

id description
K00778 SIAT1, ST6GAL1; beta-galactoside alpha-2,6-sialyltransferase (sialyltransferase 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982879.1 False 3525 mRNA 0.48 6 20634135 20655294
XM_021608739.2 True 3381 mRNA 0.49 6 20634135 20658344

Neighbor

gene id symbol gene type direction distance location
LOC110527460 LOC106575256 coding upstream 94472 20527428 ~ 20539663 (+)
LOC110527457 NA coding upstream 318248 20301287 ~ 20315887 (+)
LOC118965349 NA coding upstream 471240 20162080 ~ 20162895 (+)
LOC110527453 en1 coding upstream 536072 20093794 ~ 20098063 (+)
LOC110527452 LOC106575339 coding upstream 569155 20062976 ~ 20064980 (+)
LOC110527471 LOC106574225 coding downstream 202460 20860804 ~ 20868580 (+)
LOC110527474 LOC106575156 coding downstream 211119 20869463 ~ 20873915 (+)
LOC110528809 LOC106575158 coding downstream 215908 20874252 ~ 20893679 (+)
LOC110527473 LOC106575157 coding downstream 235464 20893808 ~ 20941725 (+)
LOC110527479 LOC106575163 coding downstream 375526 21033870 ~ 21044932 (+)
G583871 NA non-coding upstream 55740 20549161 ~ 20578395 (+)
G583878 NA non-coding upstream 74475 20559261 ~ 20559660 (+)
G583831 NA non-coding upstream 167495 20466405 ~ 20466640 (+)
G583830 NA non-coding upstream 168318 20465599 ~ 20465817 (+)
G583826 NA non-coding upstream 175785 20458053 ~ 20458350 (+)
G583964 NA non-coding downstream 23855 20682199 ~ 20682407 (+)
G583966 NA non-coding downstream 26836 20685180 ~ 20685438 (+)
G583970 NA non-coding downstream 33948 20692292 ~ 20692527 (+)
G583983 NA non-coding downstream 55369 20713713 ~ 20713978 (+)
G584253 NA non-coding downstream 62269 20720613 ~ 20720966 (+)
G583605 NA other upstream 394338 20238911 ~ 20239797 (+)
LOC110528807 LOC106574429 other upstream 612408 20017855 ~ 20028775 (+)
G581976 LOC106581475 other upstream 1657136 18976678 ~ 18976999 (+)
G580997 NA other upstream 2141226 18492227 ~ 18492909 (+)
G580365 NA other upstream 2817287 17813342 ~ 17816848 (+)
G584643 NA other downstream 422484 21080828 ~ 21082615 (+)
G585573 NA other downstream 1294685 21953029 ~ 21953269 (+)
c7h10orf53 cssa17h10orf53 other downstream 1698239 22356500 ~ 22360232 (+)
LOC110527523 stat1-2 other downstream 2028145 22684527 ~ 22722539 (+)
G586685 NA other downstream 2351717 23010061 ~ 23015120 (+)

Expression


Co-expression Network