LOC110527466 (LOC106574444)


Basic Information

Item Value
gene id LOC110527466
gene name LOC106574444
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20654190 ~ 20676948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982880.1
TAAAGGAAGGCCAACCAAAATAAGCGCGCTCAGTCTATGCGTTCTAATCTGAACGTGGTGGAGCTATGAGAAGATAAGTGCCATTGGATTGTATTCGTCTGTGCCATAGCTTTTGGAGAGAGACAAGCCAACTAAAGTAACCTTCTAATAATAATCTTATTATAATACTTCGACTAGTTTTATTTTACGCAAGTATAGTGTATTTTACGCAAGTGTTATATGGTGATGACCTGATTCCTGTTTGGATTCATCTGGATTGATCGGATATTAGTGGCTATTATTATTGATTTATCATTATTATTGATTTATCATTACTATTTCTATTTCCATTAAACATAATTTTTAACTCCAATTTGCAACACCATAATTGTCTACTACGGTTTCCAAGCGGAATGAGCCTGTTTTGCACCTCTTGAGGATACAAGGAGTCTggattcatgttcagaaaatgaAGTTTAAGTTTTTTACCGTGGGCTCTATACTACCACCTCTAGCCTATAACTCTGTCGGCAGTTGATATTGCCAATTGAAAACGTGATGCTGTTGCCTATTGTTGTTCACTGACGGTTGAAATATTATAATTGTATCTCCATGTGAAACATTCTCGAATGTGGATCACTGCAAACGATGTATACCGAGGTGGCTAATTTAAACTTCAGCTCTAATGGAAGCATCGAGGATCCACTGAGCTCTCTGGATCAAGAATGGAACGAGCCCCCGGCGAAAAGACTGTCTCGGACCGGACACCATGTGATGTCCGTCTTCCTTGGATCTATTATGGTTTTTGGTTTCATCAATAACCTGGTGGTATTGATCCTGTTTATTAAGTTCAAAACTCTGCGGACTCCTGTGAACATGCTTTTGCTGAACATCAGCGTGAGTGACATGCTGGTGTGCCTCTGTGGCACCACGCTCAGCTTTGCATCCAGTCTACAGGCACGCTGGCTGTACGGGAAGCACGGGTGCATGTGGTACGGCTTCGCCAACTCTTGTTTCGGAATTGTGTCGCTAATCTCGCTGGCCTTCCTCTCCTATGACCGCTACAGCACCTTAACCGTGTACAACAAGCAAGCCCCCGACTACCGTAAGCCTCTGCTGGCCGTGGCGGGCTCCTGGCTCTACTCCCTGTTCTGGACAGTGCCCCCCCTGCTGGGCTGGAGTAGTTACGGCCTAGAGGGGGCCGGTACCAGCTGCTCGGTCACCTGGACATCCCAGACGCCCCAGTCTCACTCCTACATCATCTGCCTGTTCATCTTCTGTCTGGGTCTGCCTGTGCTGGTCATGGTCTACTGCTACGGGAGGCTGCTCTACGCTGTCAAACAGGTGGGGAGGATCCGTAAGTCGGCGGCGCGGCGGAGAGAGTTCCACATCCTGTTCATGGTGATCACCACAGTGGTGTGTTACCTGCTGTGCTGGATGCCCTACGGCGTGATCGCCATGATGGCCACCTTTGGACACCCGGGCCTTATCACCCCCATCGTGACTGTGGTGCCCTCCATCATGGCTAAGAGTAGCACCGTCATCAACCCCCTCATCTATATACTCATGAACAAACAGTTCTACAGGTGTTTCCTGATCCTGTTCCACTGCAAGCGGCCCAGTTCTGAGAACGGCGTCTCTTCCATGCCCTCCAAGACCACCGTCATCCAGCTCAACCGCCGGGGCCACAGTAACAACGTAGCCCTCACACCCCAGCTCTCCACCGGCGCCAACCaccataaccacaaccacacGGTGGAGTGCAGCACTAACAACCGTGAAGTCACCACCCCCGTCTCCGAACAGACCAGCCCAGACCCCAACCAAGAGATCACCTCCTGTGGACAGCCGCGTACCCCCCGAAGCCCCTCTCAACCCACCCCCCCTTTCCCCCATGTGACAAACGCTATCCAGTGATCACCACCGAGAACTCTAGAGGATATGGTGTTATCCCTGGCATTTGTCATGTGGTGTCGCCCAAAAACTCAGTCTACACAGTATATCATGTGGCATCACCCAACAACTCCCCATAGTGATTTGTCATCATGAGAACGCCTCAACAACAGACTACCCATAAATGATCCATAAATGATCCATCACGACGTTGTGTCACCAGAGAACTCTTCTAAACACACAGTCAGTGATCTAATCCACAACGTTACCCAGACAGAGAACTATCAATATCTTCTACGAACAAAGTGATCTATTCCACGTCATCACCCCAGAAACTACACGGTATCTTATAGAACAGGGGACCCCAGCTGGCGGCCTGCGGGTGgatttatttggccccccaagttcatggcaaatataaataataatatatttttttttttgtgtggtatTTTTGTCGTTGGATATGAGACTGTAAGAACATGAAATCAACGGAAATGGATTTTAAGTTTGGAAACCTGTTTAGAAATGATTATGCTTTAGTAAACGTTATATCTGTTTGGACTTCTTGCTGTCAGTTGGcagtaattatgttctggccccccgACCATCCGTGCATCGgcccgcagctgaatctagttgatgatccatgTTATAGAAGGTGTGTCAACCGCCCCAACCCATAGAGATGGTCAACTGTTACTTTGTCACTCAGTAAAGGTGTAGATATAAATTCCTGTCAAGTCTTGCCGTGAGAAAACGCAACAGTGTGGTGTTGTTTACTTAAAAACAAAACGTGTATTTTTCCTCAACTTCCGTTATCATATTGTTACATGTGTTACGTCGATAGACACCAGAGTTGTATTAAGACTGCAGTGGCTTTAGTGTTGTCATTACTGTTACagttcaaaaaagtattttgtcataACTGTTACAGTGTGCTGTCATATAACAGCAATAACAGACAGTCCATCTATTCATTTGTTCTAAAGCAGCTATGTGAATGATGCCGGTGAAGCTGAATGCTTTGTACCTCATCTGTGAGATCAAATCACCTCGGGCCTCATTTGTTTGCTCAGTTTTTATTCTACATTTCAGCATACCATTAGTTCTTGAAACAATAGG

Function

NR:

description
pinopsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982880.1 True 2997 mRNA 0.46 4 20654190 20676948

Neighbor

gene id symbol gene type direction distance location
LOC110527463 LOC106574441 coding downstream 66915 20583202 ~ 20587275 (-)
LOC110527461 LOC106574439 coding downstream 94492 20540604 ~ 20578691 (-)
LOC110527462 LOC106575257 coding downstream 125297 20521527 ~ 20528893 (-)
LOC110527459 LOC106575258 coding downstream 136823 20337552 ~ 20517367 (-)
trnaa-ugc-21 NA coding downstream 222668 20431449 ~ 20431522 (-)
LOC110527467 LOC106574445 coding upstream 82056 20759004 ~ 20765110 (-)
otos2 LOC106575250 coding upstream 96206 20772867 ~ 20778065 (-)
LOC110527469 LOC106574449 coding upstream 103576 20780524 ~ 20837355 (-)
LOC110527470 LOC103366558 coding upstream 161467 20838415 ~ 20839399 (-)
trnat-ugu-34 NA coding upstream 254160 20931108 ~ 20931180 (-)
G584137 NA non-coding downstream 96691 20542715 ~ 20557499 (-)
G584077 NA non-coding downstream 185586 20468397 ~ 20468604 (-)
G584069 NA non-coding downstream 202050 20451934 ~ 20452140 (-)
G584067 NA non-coding downstream 203677 20450280 ~ 20450513 (-)
G584233 NA non-coding upstream 22664 20699612 ~ 20699889 (-)
G584240 NA non-coding upstream 32030 20708978 ~ 20709240 (-)
G584243 NA non-coding upstream 36700 20713648 ~ 20713971 (-)
G584263 NA non-coding upstream 50205 20727153 ~ 20727414 (-)
G584453 NA non-coding upstream 60223 20737171 ~ 20737421 (-)
G583661 NA other downstream 404205 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2419152 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 2610810 18042927 ~ 18043380 (-)
G580487 NA other downstream 3253654 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3853504 16797680 ~ 16800686 (-)
G585240 LOC106575179 other upstream 744506 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 840447 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 1415864 22089741 ~ 22163995 (-)

Expression


Co-expression Network