LOC110527467 (LOC106574445)



Basic Information


Item Value
gene id LOC110527467
gene name LOC106574445
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20759004 ~ 20765110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021608741.2
tcctctaggaagGAATGTTTGTTCTCTGGGCCTGTGGGGAGACTCCTGCTTCCACTGCTCCTGATTCTCCTCCTGCTTCCTCTACCCACTGCTTCCTGAGACTCAGAGAGACGCCTGGGACAGAGACGAAGACCATGGCTTTCCACAACCTCTGTCTGCAGGTTCTACTGCTAACGGCCTTCCTCTCCTACTGCGCTCACTCAGATGGCGCAGGGGAGAACAAGCTCCACAGACTACTGAAGAAAAGAGATGTGGGCGGAGGTACGAAGCCTGCGGGGGTGGCGGTGGCCCCCTCCAAGGCCAAAGAGTTCCTGACCTCCCTACGGAGGCCCAAGAGGAACATCTGGGACCGCAGCAGGCCAGATGTGCAGCAATGGATCATGCAGTTCATGCACATGGGGTATGACGAGGCGAGGCTTGAGACTGACCTGTCCTACTGGATGGACCTGGCCCGGTCGTCAGACCAAGGTCGCCAGCACCATTATGACGAGAACGCCCCCATCGGGCCCCAGGACCCCGGTTCCTACAGACACGGCGCCAATGTCAATTATGACTACTATTAAttggccagctgtgatttactcAGTTTCTCTGTCTCAACATAACAATCACACGAGCTTAAAGAGAGAGTTCTGAGATTTTACATAGCAAGATATGTGTTCCCTTAGACGACTTcaaagtaaggaaacaaatatGTTGTTTTGTAAAATCGCTGAACTGTCCCAATCACATGAATGCTTCCCTCTTCTGCGACTTATCCCTCTGATGCTATTCTGCACACATACAGTAATGTAGCCTTCTCTGTAATGCAATAAATGGAGCTAAGACATGCCTGTCCCAGACTATGGATTGGGTTTCACTGTCTCTACATTTTATCCTTTGCTGTCTGGGAGATTGAGACCTTCTGATGTACACGCTGTGATGGGACCACAATGCATTGGGTTGATCTGtctgaataactaaataaaagACAGTCAAAACCTTTAATAA

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021608741.2 True 990 mRNA 0.50 4 20759004 20765110

Neighbor


gene id symbol gene type direction distance location
LOC110527466 LOC106574444 coding downstream 82056 20654190 ~ 20676948 (-)
LOC110527463 LOC106574441 coding downstream 171729 20583202 ~ 20587275 (-)
LOC110527461 LOC106574439 coding downstream 199306 20540604 ~ 20578691 (-)
LOC110527462 LOC106575257 coding downstream 230111 20521527 ~ 20528893 (-)
LOC110527459 LOC106575258 coding downstream 241637 20337552 ~ 20517367 (-)
otos2 LOC106575250 coding upstream 8044 20772867 ~ 20778065 (-)
LOC110527469 LOC106574449 coding upstream 15414 20780524 ~ 20837355 (-)
LOC110527470 LOC103366558 coding upstream 73305 20838415 ~ 20839399 (-)
trnat-ugu-34 NA coding upstream 165998 20931108 ~ 20931180 (-)
LOC110527476 NA coding upstream 177827 20942923 ~ 20949096 (-)
G584453 NA non-coding downstream 21583 20737171 ~ 20737421 (-)
G584263 NA non-coding downstream 31590 20727153 ~ 20727414 (-)
G584243 NA non-coding downstream 45033 20713648 ~ 20713971 (-)
G584240 NA non-coding downstream 49764 20708978 ~ 20709240 (-)
G584233 NA non-coding downstream 59115 20699612 ~ 20699889 (-)
G584481 NA non-coding upstream 13103 20778213 ~ 20778419 (-)
G584483 NA non-coding upstream 18096 20783206 ~ 20783463 (-)
G584487 NA non-coding upstream 22305 20787415 ~ 20787710 (-)
G584490 NA non-coding upstream 27762 20792872 ~ 20793105 (-)
G584500 NA non-coding upstream 40623 20805733 ~ 20805942 (-)
G583661 NA other downstream 509019 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2523966 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 2715624 18042927 ~ 18043380 (-)
G580487 NA other downstream 3358468 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3958318 16797680 ~ 16800686 (-)
G585240 LOC106575179 other upstream 656344 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 752285 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 1327702 22089741 ~ 22163995 (-)

Expression



Co-expression Network