otos2 (LOC106575250)


Basic Information

Item Value
gene id otos2
gene name LOC106575250
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20772867 ~ 20778065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608746.2
GGACCAACATATCCTGGACAGCTCTGTTAACTGTATCTGTCCTCCCATCCAGGTTCTGGGTATATCTGGACAtacacacgctacacacacacacacacactcgcccaGAGCAAGAGGACCAAGAGCCCGGATCCAGCACCAGGTACCTGTATCAGTTGCAAAACCATGCCTCGTCTTTGTGTCTCAATGCTGCTCTGGGTCGTCCTGCTGGGTCTCCTCTCTCTAATAGGGGCTGAGGAAACAGCAGGAGAAGAAGGCAAAGCAGATTTGGGGCGTGAGAAGCGCAGCATGCCCAACTGGGCTCTGACCTCCTCTGACTTCTTCGGCTGGGTGGAGGCTCTGCGCGAGTACGCTGGTTATGAGAAGATTGAAGACCTGTCCAGAACCTTCTGGGCACACTTCCCATCCGCCAGCCGCCTGGGCTATGAGCTGTCCGACCCTGACGAGGAGTGACCACAACCACAAATATAAAAACTGGTgaaggatcagtttagccttttttaGATCTAAAATAATAAGTGTATATGGACAGGGGGacagagtaggaatgctgatctaagatcaggccccactgtccatgtaatctgatgaattgtgatctaaaataaagaaactgatcctagatcagcactccttctctgagacgctttatgattACAGGACCAGAACTAGAACCAACATCTCTCTACTGCATGCAAGTAGTGTAGAATATAGAGGCCTACTCTATGTCCTCAGAGGACCCTGGAAAAGACATGCATTGACACTCACCAAAGAGGAGAAAAGGATGGATGGAATGTCTGCATGGAGGTCATGTGATGCTCAGTACTGTACGTGGGATAGACAGAGAACACACGCTGACACCAGATCAGGCCTCTCATACACTTGACTTGTTTTGTGTCCAAGAACAATAAATCTGCCTGCGTTCTGTGTGTGAAACTGCTTTTCCACGACCCAATTAAACTCCCAGGGCCCTGGAGATTTAATTCTT
>XM_021608745.2
TCAGTCCGTTGACATGTCTGCCTCAGGTGTGAGAAGTGGAGACTGGGTAGGAAAGAGAGGGCGGTGGGTTCGGATGTAAGGTATGGCATGTGGATCTGAAGTGTGAAGGACCAACATATCCTGGACAGCTCTGTTAACTGTATCTGTCCTCCCATCCAGGTTCTGGGTATATCTGGACAtacacacgctacacacacacacacacactcgcccaGAGCAAGAGGACCAAGAGCCCGGATCCAGCACCAGTGCAAAACCATGCCTCGTCTTTGTGTCTCAATGCTGCTCTGGGTCGTCCTGCTGGGTCTCCTCTCTCTAATAGGGGCTGAGGAAACAGCAGGAGAAGAAGGCAAAGCAGATTTGGGGCGTGAGAAGCGCAGCATGCCCAACTGGGCTCTGACCTCCTCTGACTTCTTCGGCTGGGTGGAGGCTCTGCGCGAGTACGCTGGTTATGAGAAGATTGAAGACCTGTCCAGAACCTTCTGGGCACACTTCCCATCCGCCAGCCGCCTGGGCTATGAGCTGTCCGACCCTGACGAGGAGTGACCACAACCACAAATATAAAAACTGGTgaaggatcagtttagccttttttaGATCTAAAATAATAAGTGTATATGGACAGGGGGacagagtaggaatgctgatctaagatcaggccccactgtccatgtaatctgatgaattgtgatctaaaataaagaaactgatcctagatcagcactccttctctgagacgctttatgattACAGGACCAGAACTAGAACCAACATCTCTCTACTGCATGCAAGTAGTGTAGAATATAGAGGCCTACTCTATGTCCTCAGAGGACCCTGGAAAAGACATGCATTGACACTCACCAAAGAGGAGAAAAGGATGGATGGAATGTCTGCATGGAGGTCATGTGATGCTCAGTACTGTACGTGGGATAGACAGAGAACACACGCTGACACCAGATCAGGCCTCTCATACACTTGACTTGTTTTGTGTCCAAGAACAATAAATCTGCCTGCGTTCTGTGTGTGAAACTGCTTTTCCACGACCCAATTAAACTCCCAGGGCCCTGGAGATTTAATTCTT
>XM_021608743.2
ACATATCCTGGACAGCTCTGTTAACTGTATCTGTCCTCCCATCCAGGTTCTGGGTATATCTGGACAtacacacgctacacacacacacacacactcgcccaGAGCAAGAGGACCAAGAGCCCGGATCCAGCACCAGGTACCTGTATCAGTTGCAAAACCATGCCTCGTCTTTGTGTCTCAATGCTGCTCTGGGTCGTCCTGCTGGGTCTCCTCTCTCTAATAGGGGCTGAGGAAACAGCAGGAGAAGAAGGCAAAGCAGCAGATTTGGGGCGTGAGAAGCGCAGCATGCCCAACTGGGCTCTGACCTCCTCTGACTTCTTCGGCTGGGTGGAGGCTCTGCGCGAGTACGCTGGTTATGAGAAGATTGAAGACCTGTCCAGAACCTTCTGGGCACACTTCCCATCCGCCAGCCGCCTGGGCTATGAGCTGTCCGACCCTGACGAGGAGTGACCACAACCACAAATATAAAAACTGGTgaaggatcagtttagccttttttaGATCTAAAATAATAAGTGTATATGGACAGGGGGacagagtaggaatgctgatctaagatcaggccccactgtccatgtaatctgatgaattgtgatctaaaataaagaaactgatcctagatcagcactccttctctgagacgctttatgattACAGGACCAGAACTAGAACCAACATCTCTCTACTGCATGCAAGTAGTGTAGAATATAGAGGCCTACTCTATGTCCTCAGAGGACCCTGGAAAAGACATGCATTGACACTCACCAAAGAGGAGAAAAGGATGGATGGAATGTCTGCATGGAGGTCATGTGATGCTCAGTACTGTACGTGGGATAGACAGAGAACACACGCTGACACCAGATCAGGCCTCTCATACACTTGACTTGTTTTGTGTCCAAGAACAATAAATCTGCCTGCGTTCTGTGTGTGAAACTGCTTTTCCACGACCCAATTAAACTCCCAGGGCCCTGGAGATTTAATT
>XM_021608742.2
GCGGTGGGTTCGGATGTAAGGTATGGCATGTGGATCTGAAGTGTGAAGGACCAACATATCCTGGACAGCTCTGTTAACTGTATCTGTCCTCCCATCCAGGTTCTGGGTATATCTGGACAtacacacgctacacacacacacacacactcgcccaGAGCAAGAGGACCAAGAGCCCGGATCCAGCACCAGTGCAAAACCATGCCTCGTCTTTGTGTCTCAATGCTGCTCTGGGTCGTCCTGCTGGGTCTCCTCTCTCTAATAGGGGCTGAGGAAACAGCAGGAGAAGAAGGCAAAGCAGCAGATTTGGGGCGTGAGAAGCGCAGCATGCCCAACTGGGCTCTGACCTCCTCTGACTTCTTCGGCTGGGTGGAGGCTCTGCGCGAGTACGCTGGTTATGAGAAGATTGAAGACCTGTCCAGAACCTTCTGGGCACACTTCCCATCCGCCAGCCGCCTGGGCTATGAGCTGTCCGACCCTGACGAGGAGTGACCACAACCACAAATATAAAAACTGGTgaaggatcagtttagccttttttaGATCTAAAATAATAAGTGTATATGGACAGGGGGacagagtaggaatgctgatctaagatcaggccccactgtccatgtaatctgatgaattgtgatctaaaataaagaaactgatcctagatcagcactccttctctgagacgctttatgattACAGGACCAGAACTAGAACCAACATCTCTCTACTGCATGCAAGTAGTGTAGAATATAGAGGCCTACTCTATGTCCTCAGAGGACCCTGGAAAAGACATGCATTGACACTCACCAAAGAGGAGAAAAGGATGGATGGAATGTCTGCATGGAGGTCATGTGATGCTCAGTACTGTACGTGGGATAGACAGAGAACACACGCTGACACCAGATCAGGCCTCTCATACACTTGACTTGTTTTGTGTCCAAGAACAATAAATCTGCCTGCGTTCTGTGTGTGAAACTGCTTTTCCACGACCCAATTAAACTCCCAGGGCCCTGGAGATTTAATT
>TU666686
AAAGGAAGCCTTTCAGTCCGTTGACATGTCTGCCTCAGGTGTGAGAAGTGGAGACTGGGTAGGAAAGAGAGGGCGGTGGGTTCGGATGTAAGGTTCTGGGTATATCTGGACAtacacacgctacacacacacacacacactcgcccaGAGCAAGAGGACCAAGAGCCCGGATCCAGCACCAGTGCAAAACCATGCCTCGTCTTTGTGTCTCAATGCTGCTCTGGGTCGTCCTGCTGGGTCTCCTCTCTCTAATAGGGGCTGAGGAAACAGCAGGAGAAGAAGGCAAAGCAGATTTGGGGCGTGAGAAGCGCAGCATGCCCAACTGGGCTCTGACCTCCTCTGACTTCTTCGGCTGGGTGGAGGCTCTGCGCGAGTACGCTGGTTATGAGAAGATTGAAGACCTGTCCAGAACCTTCTGGGCACACTTCCCATCCGCCAGCCGCCTGGGCTATGAGCTGTCCGACCCTGACGAGGAGTGACCACAACCACAAATATAAAAACTGGTgaaggatcagtttagccttttttaGATCTAAAATAATAAGTGTATATGGACAGGGGGacagagtaggaatgctgatctaagatcaggccccactgtccatgtaatctgatgaattgtgatctaaaataaagaaactgatcctagatcagcactccttctctgagacgctttatgattACAGGACCAGAACTAGAACCAACATCTCTCTACTGCATGCAAGTAGTGTAGAATATAGAGGCCTACTCTATGTCCTCAGAGGACCCTGGAAAAGACATGCATTGACACTCACCAAAGAGGAGAAAAGGATGGATGGAATGTCTGCATGGAGGTCATGTGATGCTCAGTACTGTACGTGGGATAGACAGAGAACACACGCTGACACCAGATCAGGCCTCTCATACACTTGACTTGTTTTGTGTCCAAGAACAATAAATCTGCCTGCGTTCTGTGTGTGAAACTGCTTTTCCACGACCCAATTAAACTCCCAGGGCCCTGGAGATTTAATTCTTGTGAATAGTCTGTTTCTTTAAACTTGTCTTGAACAGCCGCTGCATGCTAAGCTCTCCTCCCAAAAGATGTGCGTGGCGCAGAAGTTAAAGTTGTTAAACAATTGATTCATGGAAAAGTACAATCGTGCAGCAGCTATCAACATGTTTGTCAGAATCCTGGCTCGCTTGAAACTACTACTCGGGTCTAGTTTCCCGAACACAGATTTGGTTTATTTTTGGACTAAAAATAACTTGCTTACTAGGCTTAATCCATGTAATCAACCCTATGCAAATCCACATACCAGAGA

Function

NR:

description
otospiralin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608746.2 False 988 mRNA 0.49 4 20773154 20777946
XM_021608745.2 False 1081 mRNA 0.49 4 20773154 20778053
XM_021608743.2 False 982 mRNA 0.49 4 20773157 20777940
XM_021608742.2 False 1021 mRNA 0.49 4 20773157 20777993
TU666686 True 1301 TUCP 0.47 5 20772867 20778065

Neighbor

gene id symbol gene type direction distance location
LOC110527467 LOC106574445 coding downstream 8044 20759004 ~ 20765110 (-)
LOC110527466 LOC106574444 coding downstream 96206 20654190 ~ 20676948 (-)
LOC110527463 LOC106574441 coding downstream 185879 20583202 ~ 20587275 (-)
LOC110527461 LOC106574439 coding downstream 213456 20540604 ~ 20578691 (-)
LOC110527462 LOC106575257 coding downstream 244261 20521527 ~ 20528893 (-)
LOC110527469 LOC106574449 coding upstream 2471 20780524 ~ 20837355 (-)
LOC110527470 LOC103366558 coding upstream 60362 20838415 ~ 20839399 (-)
trnat-ugu-34 NA coding upstream 153055 20931108 ~ 20931180 (-)
LOC110527476 NA coding upstream 164884 20942923 ~ 20949096 (-)
LOC110527478 LOC106574231 coding upstream 173924 20951977 ~ 21021196 (-)
G584453 NA non-coding downstream 35733 20737171 ~ 20737421 (-)
G584263 NA non-coding downstream 45740 20727153 ~ 20727414 (-)
G584243 NA non-coding downstream 59183 20713648 ~ 20713971 (-)
G584240 NA non-coding downstream 63914 20708978 ~ 20709240 (-)
G584233 NA non-coding downstream 73265 20699612 ~ 20699889 (-)
G584481 NA non-coding upstream 160 20778213 ~ 20778419 (-)
G584483 NA non-coding upstream 5153 20783206 ~ 20783463 (-)
G584487 NA non-coding upstream 9362 20787415 ~ 20787710 (-)
G584490 NA non-coding upstream 14819 20792872 ~ 20793105 (-)
G584500 NA non-coding upstream 27680 20805733 ~ 20805942 (-)
G583661 NA other downstream 523169 20215649 ~ 20249985 (-)
G581174 LOC101077481 other downstream 2538116 18217158 ~ 18235038 (-)
G581089 LOC106575297 other downstream 2729774 18042927 ~ 18043380 (-)
G580487 NA other downstream 3372618 17397857 ~ 17400536 (-)
LOC110527396 LOC106574529 other downstream 3972468 16797680 ~ 16800686 (-)
G585240 LOC106575179 other upstream 643401 21421454 ~ 21424585 (-)
LOC110527499 LOC106575189 other upstream 739342 21513832 ~ 21583054 (-)
LOC110527506 LOC106575199 other upstream 1314759 22089741 ~ 22163995 (-)
G586414 LOC106574278 other upstream 1685155 22463208 ~ 22470518 (-)

Expression


Co-expression Network